-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2215

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2215-snap.1-T1
Couldn't classify 11, 234
Couldn't classify 1109, 1208
Sorry, prediction GeneMark_model.110136_t fails validation.
(CCT)	 AG	11-234	GT	CAG
(CAG)	 AG	526-688	GT	GAG
(AGG)	 AG	720-788	GT	GAG
(AGG)	 AG	810-866	GT	AAG
(GGA)	 AG	887-895	GT	GGG
(GGG)	 AG	920-1007	GT	AAG
(GCC)	 AG	1109-1208	GT	CAG
-recovered GeneMark_model.110136_t, internal, 11, 234
-recovered GeneMark_model.110136_t, internal, 526, 688
-recovered GeneMark_model.110136_t, internal, 720, 788
-recovered GeneMark_model.110136_t, internal, 810, 866
-recovered GeneMark_model.110136_t, internal, 887, 895
-recovered GeneMark_model.110136_t, internal, 920, 1007
-recovered GeneMark_model.110136_t, internal, 1109, 1208

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1465
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support