-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2213

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 112, 244
Couldn't classify 1140, 1307
Sorry, prediction GeneMark_model.110135_t fails validation.
(AGT)	 AG	112-244	GT	GAG
(GGA)	 AG	278-301	GT	AGG
(GGG)	 AG	322-333	GT	GTG
(GCT)	 AG	676-798	GT	AGG
(GAG)	 AG	865-921	GT	GAG
(GCC)	 AG	947-970	GT	GGG
(AGG)	 AG	1033-1110	GT	GAG
(AGA)	 AG	1140-1307	GT	AGG
-recovered GeneMark_model.110135_t, internal, 112, 244
-recovered GeneMark_model.110135_t, internal, 278, 301
-recovered GeneMark_model.110135_t, internal, 322, 333
-recovered GeneMark_model.110135_t, internal, 676, 798
-recovered GeneMark_model.110135_t, internal, 865, 921
-recovered GeneMark_model.110135_t, internal, 947, 970
-recovered GeneMark_model.110135_t, internal, 1033, 1110
-recovered GeneMark_model.110135_t, internal, 1140, 1307

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1468
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support