-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2212

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 235, 431
Sorry, prediction GeneMark_model.110134_t fails validation.
(ACC)	 AG	235-431	GT	AGG
(ACA)	 AG	593-640	TC	GAT
-recovered GeneMark_model.110134_t, terminal, 593, 640
-recovered GeneMark_model.110134_t, internal, 235, 431
Couldn't classify 235, 431
Sorry, prediction Augustus_model.g41997.t1 fails validation.
(ACC)	 AG	235-431	GT	AGG
(CGG)	 AG	739-789	GT	AGG
(GCT)	 AG	899-967	TC	GAT
-recovered Augustus_model.g41997.t1, terminal, 899, 967
-recovered Augustus_model.g41997.t1, internal, 235, 431
-recovered Augustus_model.g41997.t1, internal, 739, 789
Couldn't classify 235, 431
Couldn't classify 739, 789
Sorry, prediction snap_scaffold_2212-snap.1-T1 fails validation.
(ACC)	 AG	235-431	GT	AGG
(CGG)	 AG	739-789	GT	AGG
-recovered snap_scaffold_2212-snap.1-T1, internal, 235, 431
-recovered snap_scaffold_2212-snap.1-T1, internal, 739, 789
Couldn't classify 235, 462
Sorry, prediction GlimmerHMM_glimmerT_63024-T1 fails validation.
(ACC)	 AG	235-462	GT	AAG
(CGG)	 AG	739-789	GT	AGG
(ATT)	 AG	1064-1218	TC	GAT
-recovered GlimmerHMM_glimmerT_63024-T1, terminal, 1064, 1218
-recovered GlimmerHMM_glimmerT_63024-T1, internal, 235, 462
-recovered GlimmerHMM_glimmerT_63024-T1, internal, 739, 789

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1468
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support