-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2211

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 164, 553
Sorry, prediction GeneMark_model.110133_t fails validation.
(AGA)	 AG	164-553	GT	GGG
(GGT)	 AG	586-594	GT	GGG
(AAA)	 AG	620-631	GT	AGG
(AGG)	 AG	656-664	GT	GGG
(GGT)	 AG	686-694	GT	AGG
(ATA)	 AG	1092-1095	AC	AGA
-recovered GeneMark_model.110133_t, terminal, 1092, 1095
-recovered GeneMark_model.110133_t, internal, 164, 553
-recovered GeneMark_model.110133_t, internal, 586, 594
-recovered GeneMark_model.110133_t, internal, 620, 631
-recovered GeneMark_model.110133_t, internal, 656, 664
-recovered GeneMark_model.110133_t, internal, 686, 694

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1341, 1402
Sorry, prediction snap_scaffold_2211-snap.1-T1 fails validation.
(ATG)	 GG	8-135	GT	AGG
(GGC)	 AG	301-340	GT	AAG
(GCT)	 AG	1341-1402	GT	AGG
-recovered snap_scaffold_2211-snap.1-T1, initial, 8, 135
-recovered snap_scaffold_2211-snap.1-T1, internal, 301, 340
-recovered snap_scaffold_2211-snap.1-T1, internal, 1341, 1402

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1470
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support