-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2208

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1389, 1434
Sorry, prediction GeneMark_model.110132_t fails validation.
(ATG)	 AG	336-388	GT	GAG
(GAA)	 AG	478-664	GT	AGG
(CCA)	 AG	973-1022	GT	CTG
(AGG)	 AG	1353-1361	GT	AGG
(GAG)	 AG	1389-1434	GT	AGG
-recovered GeneMark_model.110132_t, initial, 336, 388
-recovered GeneMark_model.110132_t, internal, 336, 388
-recovered GeneMark_model.110132_t, internal, 478, 664
-recovered GeneMark_model.110132_t, internal, 973, 1022
-recovered GeneMark_model.110132_t, internal, 1353, 1361
-recovered GeneMark_model.110132_t, internal, 1389, 1434
Valid prediction for GlimmerHMM_glimmerT_63022-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63022-T1 336-737-initial-1 is invalid.
Valid prediction for HiQ_model.g41996.t1
Couldn't classify 290, 832
Sorry, prediction pasa_asmbl_30559.p1 fails validation.
(ATG)	 AT	290-832	GA	GGG
Valid prediction for snap_scaffold_2208-snap.1-T1
add_exon() Sorry, snap_scaffold_2208-snap.1-T1 336-664-initial-1 is invalid.
add_exon() Sorry, snap_scaffold_2208-snap.1-T1 973-1113-terminal-3 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1472
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support