-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2205

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 82, 176
Sorry, prediction Augustus_model.g41995.t1 fails validation.
(GTT)	 AG	82-176	GT	ATG
(GTG)	 AG	509-604	AG	AGA
-recovered Augustus_model.g41995.t1, terminal, 509, 604
-recovered Augustus_model.g41995.t1, internal, 82, 176
Couldn't classify 82, 176
Sorry, prediction snap_scaffold_2205-snap.1-T1 fails validation.
(GTT)	 AG	82-176	GT	ATG
(GTG)	 AG	509-604	AG	AGA
-recovered snap_scaffold_2205-snap.1-T1, terminal, 509, 604
-recovered snap_scaffold_2205-snap.1-T1, internal, 82, 176
Couldn't classify 82, 176
Sorry, prediction GeneMark_model.110129_t fails validation.
(GTT)	 AG	82-176	GT	ATG
(GTG)	 AG	509-604	AG	AGA
-recovered GeneMark_model.110129_t, terminal, 509, 604
-recovered GeneMark_model.110129_t, internal, 82, 176

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.110130_t
add_exon() Sorry, GeneMark_model.110130_t 228-421-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1474
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support