-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2204

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 135, 145
Sorry, prediction GeneMark_model.110128_t fails validation.
(GTC)	 AG	135-145	GT	ATG
(GTT)	 AG	452-518	GT	AGG
(ATC)	 AG	596-648	GT	CCG
(ACA)	 AG	789-861	TC	AAT
-recovered GeneMark_model.110128_t, terminal, 789, 861
-recovered GeneMark_model.110128_t, internal, 135, 145
-recovered GeneMark_model.110128_t, internal, 452, 518
-recovered GeneMark_model.110128_t, internal, 596, 648
Couldn't classify 418, 518
Sorry, prediction GlimmerHMM_glimmerT_63021-T1 fails validation.
(GAA)	 AG	418-518	GT	AGG
(ATC)	 AG	596-652	GA	GAG
-recovered GlimmerHMM_glimmerT_63021-T1, terminal, 596, 652
-recovered GlimmerHMM_glimmerT_63021-T1, internal, 418, 518
Couldn't classify 418, 518
Sorry, prediction Augustus_model.g41994.t1 fails validation.
(GAA)	 AG	418-518	GT	AGG
(ATC)	 AG	596-652	GA	GAG
-recovered Augustus_model.g41994.t1, terminal, 596, 652
-recovered Augustus_model.g41994.t1, internal, 418, 518

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1474
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support