-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2203

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.110127_t
Couldn't classify 295, 494
Couldn't classify 1042, 1139
Sorry, prediction snap_scaffold_2203-snap.1-T1 fails validation.
(GGG)	 AG	295-494	GT	AGG
(ACT)	 AG	693-818	GT	CGG
(ATG)	 AG	1042-1139	GT	AGG
add_exon() Sorry, snap_scaffold_2203-snap.1-T1 1042-1139-initial-1 is invalid.
-recovered snap_scaffold_2203-snap.1-T1, initial, 1042, 1139
-recovered snap_scaffold_2203-snap.1-T1, internal, 295, 494
-recovered snap_scaffold_2203-snap.1-T1, internal, 693, 818
-recovered snap_scaffold_2203-snap.1-T1, internal, 1042, 1139
Couldn't classify 295, 494
Sorry, prediction GlimmerHMM_glimmerT_63020-T1 fails validation.
(GGG)	 AG	295-494	GT	AGG
(ACT)	 AG	693-919	CC	AAC
-recovered GlimmerHMM_glimmerT_63020-T1, terminal, 693, 919
-recovered GlimmerHMM_glimmerT_63020-T1, internal, 295, 494
Couldn't classify 295, 494
Couldn't classify 1042, 1139
Sorry, prediction Augustus_model.g41993.t1 fails validation.
(GGG)	 AG	295-494	GT	AGG
(ACT)	 AG	693-818	GT	CGG
(ATG)	 AG	1042-1139	GT	AGG
add_exon() Sorry, Augustus_model.g41993.t1 1042-1139-initial-1 is invalid.
-recovered Augustus_model.g41993.t1, initial, 1042, 1139
-recovered Augustus_model.g41993.t1, internal, 295, 494
-recovered Augustus_model.g41993.t1, internal, 693, 818
-recovered Augustus_model.g41993.t1, internal, 1042, 1139
Couldn't classify 398, 494
Couldn't classify 1042, 1139
Sorry, prediction pasa_asmbl_30557.p1 fails validation.
(CGC)	 CC	398-494	GT	AGG
(ACT)	 AG	693-818	GT	CGG
(ATG)	 AG	1042-1139	GT	AGG
add_exon() Sorry, pasa_asmbl_30557.p1 1042-1139-initial-1 is invalid.
-recovered pasa_asmbl_30557.p1, initial, 1042, 1139
-recovered pasa_asmbl_30557.p1, internal, 693, 818
-recovered pasa_asmbl_30557.p1, internal, 1042, 1139

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1474
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support