-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_220

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106977_t
Couldn't classify 210, 408
Sorry, prediction Augustus_model.g40920.t1 fails validation.
(TCA)	 AG	210-408	GT	AGG
(CGG)	 AG	622-703	GT	AGG
(CAA)	 AG	1069-1219	GT	AGG
(TAT)	 AG	1480-1672	GT	AGG
(CTT)	 AG	1889-1970	GT	AGG
(TTG)	 AG	2329-2451	GT	GAG
(CAA)	 AG	2630-2733	GT	AGG
(ACT)	 AG	3469-3641	GT	AGG
(AAG)	 AG	3765-3908	GT	AGG
(TTG)	 AG	4431-4634	GT	AGG
(TTT)	 AG	5013-5182	GT	AGG
(TTT)	 AG	5903-6024	GT	AGG
(GAA)	 AG	6715-6815	GT	AGG
(TTC)	 AG	6982-7152	GT	TTG
(GTC)	 AG	7253-7432	GC	AGG
-recovered Augustus_model.g40920.t1, terminal, 7253, 7432
-recovered Augustus_model.g40920.t1, internal, 210, 408
-recovered Augustus_model.g40920.t1, internal, 622, 703
-recovered Augustus_model.g40920.t1, internal, 1069, 1219
-recovered Augustus_model.g40920.t1, internal, 1480, 1672
-recovered Augustus_model.g40920.t1, internal, 1889, 1970
-recovered Augustus_model.g40920.t1, internal, 2329, 2451
-recovered Augustus_model.g40920.t1, internal, 2630, 2733
-recovered Augustus_model.g40920.t1, internal, 3469, 3641
-recovered Augustus_model.g40920.t1, internal, 3765, 3908
-recovered Augustus_model.g40920.t1, internal, 4431, 4634
-recovered Augustus_model.g40920.t1, internal, 5013, 5182
-recovered Augustus_model.g40920.t1, internal, 5903, 6024
-recovered Augustus_model.g40920.t1, internal, 6715, 6815
-recovered Augustus_model.g40920.t1, internal, 6982, 7152
-recovered Augustus_model.g40920.t1, internal, 7253, 7432
Valid prediction for GlimmerHMM_glimmerT_61529-T1
Couldn't classify 210, 408
Sorry, prediction snap_scaffold_220-snap.1-T1 fails validation.
(TCA)	 AG	210-408	GT	AGG
(CGG)	 AG	622-703	GT	AGG
(CAA)	 AG	1069-1153	GT	TGG
(TAT)	 AG	1480-1672	GT	AGG
(CTT)	 AG	1889-1970	GT	AGG
(TTG)	 AG	2329-2451	GT	GAG
(CAA)	 AG	2630-2733	GT	AGG
(ACT)	 AG	3469-3593	GT	TGG
(AAG)	 AG	3765-3908	GT	AGG
(TTG)	 AG	4431-4634	GT	AGG
(TTT)	 AG	5013-5182	GT	AGG
(TTT)	 AG	5903-6024	GT	AGG
(GAA)	 AG	6715-6815	GT	AGG
(TTC)	 AG	6982-7152	GT	TTG
(GTC)	 AG	7253-7432	GC	AGG
-recovered snap_scaffold_220-snap.1-T1, terminal, 7253, 7432
-recovered snap_scaffold_220-snap.1-T1, internal, 210, 408
-recovered snap_scaffold_220-snap.1-T1, internal, 622, 703
-recovered snap_scaffold_220-snap.1-T1, internal, 1069, 1153
-recovered snap_scaffold_220-snap.1-T1, internal, 1480, 1672
-recovered snap_scaffold_220-snap.1-T1, internal, 1889, 1970
-recovered snap_scaffold_220-snap.1-T1, internal, 2329, 2451
-recovered snap_scaffold_220-snap.1-T1, internal, 2630, 2733
-recovered snap_scaffold_220-snap.1-T1, internal, 3469, 3593
-recovered snap_scaffold_220-snap.1-T1, internal, 3765, 3908
-recovered snap_scaffold_220-snap.1-T1, internal, 4431, 4634
-recovered snap_scaffold_220-snap.1-T1, internal, 5013, 5182
-recovered snap_scaffold_220-snap.1-T1, internal, 5903, 6024
-recovered snap_scaffold_220-snap.1-T1, internal, 6715, 6815
-recovered snap_scaffold_220-snap.1-T1, internal, 6982, 7152
-recovered snap_scaffold_220-snap.1-T1, internal, 7253, 7432
Valid prediction for GeneMark_model.106978_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 9274, 9358
Sorry, prediction GeneMark_model.106976_t fails validation.
(ATG)	 AA	9126-9142	GT	CAG
(GGA)	 AG	9230-9250	GT	CAG
(GAA)	 AG	9274-9358	GT	GAG
-recovered GeneMark_model.106976_t, initial, 9126, 9142
-recovered GeneMark_model.106976_t, internal, 9230, 9250
-recovered GeneMark_model.106976_t, internal, 9274, 9358

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9409
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support