-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_9805721-10022659

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_51306-T1
Valid prediction for Augustus_model.g34399.t1
Valid prediction for GeneMark_model.89139_t
Valid prediction for snap_scaffold_22-snap.2051-T1
Valid prediction for snap_scaffold_22-snap.2085-T1
Valid prediction for GeneMark_model.89088_t
Valid prediction for GeneMark_model.89128_t
Valid prediction for Augustus_model.g34418.t1
Couldn't classify 150854, 151015
Sorry, prediction GeneMark_model.89131_t fails validation.
(ATG)	 CC	147171-147193	GT	GAG
(CCT)	 AG	147242-147301	GT	GAG
(AGA)	 AG	147347-147409	GT	ATG
(GAG)	 AG	147530-147610	GT	GAG
(GGA)	 AG	147691-147717	GT	GAG
(GGG)	 AG	147802-147846	GT	GAG
(GGC)	 AG	147867-147980	GT	AAG
(AAA)	 AG	148126-148161	GT	GAG
(GGG)	 AG	148202-148226	GT	TTG
(AGG)	 AG	148252-148268	GT	ATG
(GCG)	 AG	148654-148806	GT	GGG
(AAA)	 AG	149553-149654	GT	GGG
(TAT)	 AG	149686-149727	GT	CGG
(AGA)	 AG	149771-149812	GT	AGG
(GGA)	 AG	149994-150044	GT	GAG
(GAT)	 AG	150354-150362	GT	AGG
(AGG)	 AG	150393-150431	GT	GGG
(AAG)	 AG	150457-150483	GT	GGG
(GCC)	 AG	150503-150511	GT	CGG
(AAG)	 AG	150552-150557	GT	AGG
(AGG)	 AG	150610-150639	GT	GGG
(AGG)	 AG	150663-150728	GT	AGG
(GGG)	 AG	150854-151015	GT	AAG
-recovered GeneMark_model.89131_t, initial, 147171, 147193
add_exon() Sorry, GeneMark_model.89131_t 147867-147980-terminal-1 is invalid.
-recovered GeneMark_model.89131_t, terminal, 147867, 147980
-recovered GeneMark_model.89131_t, internal, 147242, 147301
-recovered GeneMark_model.89131_t, internal, 147347, 147409
-recovered GeneMark_model.89131_t, internal, 147530, 147610
-recovered GeneMark_model.89131_t, internal, 147691, 147717
-recovered GeneMark_model.89131_t, internal, 147802, 147846
-recovered GeneMark_model.89131_t, internal, 147867, 147980
-recovered GeneMark_model.89131_t, internal, 148126, 148161
-recovered GeneMark_model.89131_t, internal, 148202, 148226
-recovered GeneMark_model.89131_t, internal, 148252, 148268
-recovered GeneMark_model.89131_t, internal, 148654, 148806
-recovered GeneMark_model.89131_t, internal, 149553, 149654
-recovered GeneMark_model.89131_t, internal, 149686, 149727
-recovered GeneMark_model.89131_t, internal, 149771, 149812
-recovered GeneMark_model.89131_t, internal, 149994, 150044
-recovered GeneMark_model.89131_t, internal, 150354, 150362
-recovered GeneMark_model.89131_t, internal, 150393, 150431
-recovered GeneMark_model.89131_t, internal, 150457, 150483
-recovered GeneMark_model.89131_t, internal, 150503, 150511
-recovered GeneMark_model.89131_t, internal, 150552, 150557
-recovered GeneMark_model.89131_t, internal, 150610, 150639
-recovered GeneMark_model.89131_t, internal, 150663, 150728
-recovered GeneMark_model.89131_t, internal, 150854, 151015
Valid prediction for snap_scaffold_22-snap.2091-T1
Valid prediction for GeneMark_model.89103_t
Valid prediction for GeneMark_model.89122_t
Valid prediction for GeneMark_model.89105_t
Valid prediction for snap_scaffold_22-snap.2082-T1
Valid prediction for GeneMark_model.89115_t
Valid prediction for Augustus_model.g34408.t1
Valid prediction for GlimmerHMM_glimmerT_51302-T1
Valid prediction for snap_scaffold_22-snap.2055-T1
Valid prediction for Augustus_model.g34413.t1
Valid prediction for GlimmerHMM_glimmerT_51288-T1
Couldn't classify 211658, 211744
Sorry, prediction pasa_asmbl_29629.p1 fails validation.
(ATG)	 AC	208533-208619	GT	GGG
(GAA)	 AG	210282-210410	GT	AGG
(GAG)	 AG	211658-211744	CT	CCC
-recovered pasa_asmbl_29629.p1, initial, 208533, 208619
-recovered pasa_asmbl_29629.p1, internal, 210282, 210410
Valid prediction for GeneMark_model.89135_t
Valid prediction for GlimmerHMM_glimmerT_51300-T1
Valid prediction for GlimmerHMM_glimmerT_51303-T1
Valid prediction for Augustus_model.g34412.t1
Valid prediction for snap_scaffold_22-snap.2061-T1
Valid prediction for snap_scaffold_22-snap.2072-T1
Valid prediction for snap_scaffold_22-snap.2057-T1
Valid prediction for GeneMark_model.89118_t
Valid prediction for GeneMark_model.89130_t
Valid prediction for GeneMark_model.89093_t
Couldn't classify 136759, 137241
Sorry, prediction pasa_asmbl_29615.p1 fails validation.
(AGA)	 TT	136759-137241	GG	GAG
Valid prediction for GeneMark_model.89120_t
Valid prediction for HiQ_model.g34404.t1
Valid prediction for snap_scaffold_22-snap.2075-T1
Valid prediction for snap_scaffold_22-snap.2080-T1
Valid prediction for GeneMark_model.89101_t
Valid prediction for Augustus_model.g34414.t1
Valid prediction for GeneMark_model.89152_t
Valid prediction for GeneMark_model.89147_t
Valid prediction for GlimmerHMM_glimmerT_51297-T1
Valid prediction for GeneMark_model.89110_t
Valid prediction for Augustus_model.g34410.t1
Valid prediction for Augustus_model.g34403.t1
Valid prediction for snap_scaffold_22-snap.2092-T1
Valid prediction for GeneMark_model.89108_t
Valid prediction for GlimmerHMM_glimmerT_51301-T1
Valid prediction for GlimmerHMM_glimmerT_51292-T1
Valid prediction for Augustus_model.g34398.t1
Valid prediction for snap_scaffold_22-snap.2090-T1
Valid prediction for GeneMark_model.89106_t
Valid prediction for GeneMark_model.89099_t
Valid prediction for snap_scaffold_22-snap.2089-T1
Valid prediction for GeneMark_model.89150_t
Valid prediction for snap_scaffold_22-snap.2063-T1
Valid prediction for GeneMark_model.89097_t
Valid prediction for pasa_asmbl_29622.p1
Valid prediction for GeneMark_model.89117_t
Valid prediction for GeneMark_model.89132_t
Valid prediction for GeneMark_model.89148_t
Valid prediction for GeneMark_model.89124_t
Valid prediction for GeneMark_model.89084_t
Valid prediction for GeneMark_model.89112_t
Valid prediction for GeneMark_model.89142_t
Valid prediction for GeneMark_model.89137_t
Valid prediction for Augustus_model.g34415.t1
Valid prediction for Augustus_model.g34416.t1
Valid prediction for Augustus_model.g34395.t1
Valid prediction for GeneMark_model.89086_t
Valid prediction for GeneMark_model.89091_t
Valid prediction for GeneMark_model.89145_t
Valid prediction for snap_scaffold_22-snap.2049-T1
Valid prediction for GlimmerHMM_glimmerT_51296-T1
Valid prediction for pasa_asmbl_29769.p1
Valid prediction for Augustus_model.g34409.t1
Valid prediction for GeneMark_model.89095_t
Valid prediction for snap_scaffold_22-snap.2084-T1
Couldn't classify 119443, 119593
Sorry, prediction pasa_asmbl_29613.p1 fails validation.
(CTG)	 GT	119443-119593	GT	AGG
(AGA)	 AG	119734-119945	GA	GAG
-recovered pasa_asmbl_29613.p1, terminal, 119734, 119945
Valid prediction for snap_scaffold_22-snap.2079-T1
Valid prediction for snap_scaffold_22-snap.2054-T1
Valid prediction for snap_scaffold_22-snap.2052-T1
Couldn't classify 41913, 41999
Sorry, prediction pasa_asmbl_29609.p1 fails validation.
(CCA)	 GC	41913-41999	GT	TGG
(TGG)	 AG	42561-42613	GT	GTG
(CTC)	 AG	42699-42789	GT	TAG
(GTG)	 AG	43239-43382	AA	AGA
-recovered pasa_asmbl_29609.p1, terminal, 43239, 43382
-recovered pasa_asmbl_29609.p1, internal, 42561, 42613
-recovered pasa_asmbl_29609.p1, internal, 42699, 42789
Valid prediction for GeneMark_model.89126_t
Valid prediction for snap_scaffold_22-snap.2066-T1
Valid prediction for GlimmerHMM_glimmerT_51298-T1
Valid prediction for GlimmerHMM_glimmerT_51293-T1
Valid prediction for snap_scaffold_22-snap.2070-T1
Valid prediction for GeneMark_model.89151_t
Valid prediction for GlimmerHMM_glimmerT_51286-T1
Valid prediction for GlimmerHMM_glimmerT_51304-T1
Valid prediction for snap_scaffold_22-snap.2095-T1
Valid prediction for snap_scaffold_22-snap.2059-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_22-snap.2064-T1
Valid prediction for GeneMark_model.89085_t
Valid prediction for GlimmerHMM_glimmerT_51291-T1
Valid prediction for GeneMark_model.89133_t
Valid prediction for snap_scaffold_22-snap.2076-T1
Valid prediction for GlimmerHMM_glimmerT_51285-T1
Valid prediction for GeneMark_model.89104_t
Valid prediction for GeneMark_model.89129_t
Valid prediction for GeneMark_model.89125_t
Valid prediction for snap_scaffold_22-snap.2081-T1
Valid prediction for GeneMark_model.89136_t
Valid prediction for GeneMark_model.89090_t
Valid prediction for snap_scaffold_22-snap.2048-T1
Valid prediction for snap_scaffold_22-snap.2093-T1
Valid prediction for GeneMark_model.89107_t
Valid prediction for GlimmerHMM_glimmerT_51287-T1
Valid prediction for GeneMark_model.89116_t
Valid prediction for GeneMark_model.89089_t
Valid prediction for Augustus_model.g34394.t1
Valid prediction for GeneMark_model.89087_t
Valid prediction for snap_scaffold_22-snap.2067-T1
Valid prediction for GlimmerHMM_glimmerT_51305-T1
Valid prediction for GeneMark_model.89100_t
Valid prediction for Augustus_model.g34402.t1
Valid prediction for GeneMark_model.89111_t
Valid prediction for GeneMark_model.89094_t
Valid prediction for GeneMark_model.89121_t
Couldn't classify 110636, 110724
Couldn't classify 111455, 111521
Sorry, prediction pasa_asmbl_30341.p1 fails validation.
(ACC)	 CC	110636-110724	GT	AGG
(AAT)	 AG	110942-111205	GT	AGG
(GTT)	 AG	111455-111521	GG	AGG
-recovered pasa_asmbl_30341.p1, internal, 110942, 111205
Valid prediction for snap_scaffold_22-snap.2078-T1
Valid prediction for snap_scaffold_22-snap.2083-T1
Valid prediction for snap_scaffold_22-snap.2094-T1
Valid prediction for GeneMark_model.89119_t
Valid prediction for snap_scaffold_22-snap.2058-T1
Valid prediction for GeneMark_model.89083_t
Valid prediction for GeneMark_model.89146_t
Valid prediction for GeneMark_model.89096_t
Valid prediction for Augustus_model.g34411.t1
Valid prediction for GeneMark_model.89138_t
Valid prediction for GeneMark_model.89141_t
Valid prediction for Augustus_model.g34405.t1
Valid prediction for snap_scaffold_22-snap.2053-T1
Valid prediction for snap_scaffold_22-snap.2071-T1
Valid prediction for GeneMark_model.89153_t
Valid prediction for pasa_asmbl_30338.p1
Valid prediction for snap_scaffold_22-snap.2074-T1
Valid prediction for GeneMark_model.89143_t
Valid prediction for snap_scaffold_22-snap.2086-T1
Valid prediction for Augustus_model.g34397.t1
Valid prediction for snap_scaffold_22-snap.2069-T1
Couldn't classify 11579, 11741
Sorry, prediction pasa_asmbl_30343.p1 fails validation.
(ATG)	 AG	9845-9909	GT	TTG
(AGG)	 AG	10321-10431	GT	GGG
(GTT)	 AG	11579-11741	GG	AGG
-recovered pasa_asmbl_30343.p1, initial, 9845, 9909
-recovered pasa_asmbl_30343.p1, internal, 9845, 9909
-recovered pasa_asmbl_30343.p1, internal, 10321, 10431
Valid prediction for GeneMark_model.89127_t
Valid prediction for Augustus_model.g34400.t1
Valid prediction for CodingQuarry_transcript_34206-T1
Valid prediction for GlimmerHMM_glimmerT_51295-T1
Valid prediction for snap_scaffold_22-snap.2068-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_51289-T1
Valid prediction for GeneMark_model.89134_t
Valid prediction for snap_scaffold_22-snap.2065-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_51284-T1
Valid prediction for GeneMark_model.89102_t
Valid prediction for snap_scaffold_22-snap.2060-T1
Valid prediction for Augustus_model.g34396.t1
Valid prediction for GeneMark_model.89140_t
Valid prediction for GlimmerHMM_glimmerT_51294-T1
Valid prediction for GeneMark_model.89109_t
Valid prediction for GeneMark_model.89113_t
Valid prediction for Augustus_model.g34401.t1
Valid prediction for snap_scaffold_22-snap.2073-T1
Valid prediction for Augustus_model.g34417.t1
Valid prediction for GeneMark_model.89098_t
Valid prediction for GeneMark_model.89144_t
Valid prediction for GeneMark_model.89092_t
Valid prediction for snap_scaffold_22-snap.2050-T1
Valid prediction for snap_scaffold_22-snap.2062-T1
Valid prediction for GeneMark_model.89114_t
Valid prediction for Augustus_model.g34406.t1
Valid prediction for GeneMark_model.89123_t
Valid prediction for snap_scaffold_22-snap.2088-T1
Couldn't classify 113797, 113834
Sorry, prediction pasa_asmbl_30340.p1 fails validation.
(CAG)	 CC	113797-113834	GT	AGG
(GTA)	 AG	114054-114265	GT	CGG
(TGT)	 AG	114474-114730	GT	AGG
(GTG)	 AG	115025-115144	GT	AGG
(AAA)	 AG	116198-116357	GT	TGG
(AAA)	 AG	116878-117179	AC	AAA
-recovered pasa_asmbl_30340.p1, terminal, 116878, 117179
-recovered pasa_asmbl_30340.p1, internal, 114054, 114265
-recovered pasa_asmbl_30340.p1, internal, 114474, 114730
-recovered pasa_asmbl_30340.p1, internal, 115025, 115144
-recovered pasa_asmbl_30340.p1, internal, 116198, 116357
Valid prediction for GlimmerHMM_glimmerT_51299-T1
Valid prediction for Augustus_model.g34407.t1
Valid prediction for snap_scaffold_22-snap.2077-T1
Valid prediction for snap_scaffold_22-snap.2087-T1
Valid prediction for snap_scaffold_22-snap.2056-T1
Valid prediction for GlimmerHMM_glimmerT_51290-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 26650, rend_intergenic: 9683  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35565, rend_intergenic: 27669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38637, rend_intergenic: 36733  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46952, rend_intergenic: 45400  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55557, rend_intergenic: 51597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67014, rend_intergenic: 58315  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79954, rend_intergenic: 70533  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89421, rend_intergenic: 80145  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98382, rend_intergenic: 91307  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106430, rend_intergenic: 102444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119945, rend_intergenic: 114984  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129582, rend_intergenic: 123197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137241, rend_intergenic: 129710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161321, rend_intergenic: 150355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170662, rend_intergenic: 163255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174781, rend_intergenic: 174016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178962, rend_intergenic: 175358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190320, rend_intergenic: 181813  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193256, rend_intergenic: 190507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206004, rend_intergenic: 201428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 212770, rend_intergenic: 210191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 216939
-exon list size: 1007


building trellis

0.1    
0.2    
0.3    
0.4    
0.5    
0.6    
0.7    
0.8    
0.9    
1.0    
1.1    
1.2    
1.3    
1.4    
1.5    
1.6    
1.7    
1.8    
1.9    
2.0    
2.1    
2.2    
2.3    
2.4    
2.5    
2.6    
2.7    
2.8    
2.9    
3.0    
3.1    
3.2    
3.3    
3.4    
3.5    
3.6    
3.7    
3.8    
3.9    
4.0    
4.1    
4.2    
4.3    
4.4    
4.5    
4.6    
4.7    
4.8    
4.9    
5.0    
5.1    
5.2    
5.3    
5.4    
5.5    
5.6    
5.6    
5.7    
5.8    
5.9    
6.0    
6.1    
6.2    
6.3    
6.4    
6.5    
6.6    
6.7    
6.8    
6.9    
7.0    
7.1    
7.2    
7.3    
7.4    
7.5    
7.6    
7.7    
7.8    
7.9    
8.0    
8.1    
8.2    
8.3    
8.4    
8.5    
8.6    
8.7    
8.8    
8.9    
9.0    
9.1    
9.2    
9.3    
9.4    
9.5    
9.6    
9.7    
9.8    
9.9    
10.0    
10.1    
10.2    
10.3    
10.4    
10.5    
10.6    
10.7    
10.8    
10.9    
11.0    
11.1    
11.2    
11.3    
11.4    
11.5    
11.6    
11.7    
11.8    
11.9    
12.0    
12.1    
12.2    
12.3    
12.4    
12.5    
12.6    
12.7    
12.8    
12.9    
13.0    
13.1    
13.2    
13.3    
13.4    
13.5    
13.6    
13.7    
13.8    
13.9    
14.0    
14.1    
14.2    
14.3    
14.4    
14.5    
14.6    
14.7    
14.8    
14.9    
15.0    
15.1    
15.2    
15.3    
15.4    
15.5    
15.6    
15.7    
15.8    
15.9    
16.0    
16.1    
16.2    
16.3    
16.4    
16.5    
16.6    
16.7    
16.7    
16.8    
16.9    
17.0    
17.1    
17.2    
17.3    
17.4    
17.5    
17.6    
17.7    
17.8    
17.9    
18.0    
18.1    
18.2    
18.3    
18.4    
18.5    
18.6    
18.7    
18.8    
18.9    
19.0    
19.1    
19.2    
19.3    
19.4    
19.5    
19.6    
19.7    
19.8    
19.9    
20.0    
20.1    
20.2    
20.3    
20.4    
20.5    
20.6    
20.7    
20.8    
20.9    
21.0    
21.1    
21.2    
21.3    
21.4    
21.5    
21.6    
21.7    
21.8    
21.9    
22.0    
22.1    
22.2    
22.3    
22.4    
22.5    
22.6    
22.7    
22.8    
22.9    
23.0    
23.1    
23.2    
23.3    
23.4    
23.5    
23.6    
23.7    
23.8    
23.9    
24.0    
24.1    
24.2    
24.3    
24.4    
24.5    
24.6    
24.7    
24.8    
24.9    
25.0    
25.1    
25.2    
25.3    
25.4    
25.5    
25.6    
25.7    
25.8    
25.9    
26.0    
26.1    
26.2    
26.3    
26.4    
26.5    
26.6    
26.7    
26.8    
26.9    
27.0    
27.1    
27.2    
27.3    
27.4    
27.5    
27.6    
27.7    
27.8    
27.8    
27.9    
28.0    
28.1    
28.2    
28.3    
28.4    
28.5    
28.6    
28.7    
28.8    
28.9    
29.0    
29.1    
29.2    
29.3    
29.4    
29.5    
29.6    
29.7    
29.8    
29.9    
30.0    
30.1    
30.2    
30.3    
30.4    
30.5    
30.6    
30.7    
30.8    
30.9    
31.0    
31.1    
31.2    
31.3    
31.4    
31.5    
31.6    
31.7    
31.8    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
32.5    
32.6    
32.7    
32.8    
32.9    
33.0    
33.1    
33.2    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.1    
34.2    
34.3    
34.4    
34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.2    
35.3    
35.4    
35.5    
35.6    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.3    
36.4    
36.5    
36.6    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.3    
37.4    
37.5    
37.6    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.5    
38.6    
38.7    
38.8    
38.9    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.0    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 45 predictions from path traversal
Error with prediction: snap lend_intergenic: 26650, rend_intergenic: 9683  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35565, rend_intergenic: 27669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38637, rend_intergenic: 36733  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46952, rend_intergenic: 45400  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55557, rend_intergenic: 51597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67014, rend_intergenic: 58315  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79954, rend_intergenic: 70533  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89421, rend_intergenic: 80145  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98382, rend_intergenic: 91307  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106430, rend_intergenic: 102444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119945, rend_intergenic: 114984  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129582, rend_intergenic: 123197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137241, rend_intergenic: 129710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161321, rend_intergenic: 150355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170662, rend_intergenic: 163255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174781, rend_intergenic: 174016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178962, rend_intergenic: 175358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190320, rend_intergenic: 181813  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193256, rend_intergenic: 190507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206004, rend_intergenic: 201428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 212770, rend_intergenic: 210191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11734
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11456
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support