-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_9398418-9607896

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.89002_t
Valid prediction for snap_scaffold_22-snap.1956-T1
Valid prediction for snap_scaffold_22-snap.1963-T1
Valid prediction for GeneMark_model.88980_t
Valid prediction for Augustus_model.g34361.t1
Valid prediction for GeneMark_model.89027_t
Valid prediction for HiQ_model.g34358.t1
Valid prediction for GlimmerHMM_glimmerT_51246-T1
Valid prediction for GlimmerHMM_glimmerT_51238-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_51239-T1
Valid prediction for GeneMark_model.89025_t
Valid prediction for GeneMark_model.89010_t
Valid prediction for GlimmerHMM_glimmerT_51241-T1
Valid prediction for GeneMark_model.89007_t
Valid prediction for GlimmerHMM_glimmerT_51252-T1
Valid prediction for GeneMark_model.88998_t
Valid prediction for GeneMark_model.88992_t
Valid prediction for snap_scaffold_22-snap.1992-T1
Valid prediction for GeneMark_model.89018_t
Valid prediction for GeneMark_model.89019_t
Valid prediction for GlimmerHMM_glimmerT_51243-T1
Valid prediction for GeneMark_model.88983_t
Valid prediction for GeneMark_model.89033_t
Valid prediction for GlimmerHMM_glimmerT_51251-T1
Valid prediction for GeneMark_model.89016_t
Valid prediction for CodingQuarry_transcript_34199-T1
Valid prediction for snap_scaffold_22-snap.1968-T1
Valid prediction for snap_scaffold_22-snap.1996-T1
Valid prediction for snap_scaffold_22-snap.1962-T1
Valid prediction for GeneMark_model.89023_t
Valid prediction for snap_scaffold_22-snap.1997-T1
Valid prediction for GlimmerHMM_glimmerT_51256-T1
Valid prediction for GeneMark_model.88986_t
Valid prediction for snap_scaffold_22-snap.1999-T1
Valid prediction for GeneMark_model.89031_t
Valid prediction for GlimmerHMM_glimmerT_51260-T1
Valid prediction for Augustus_model.g34366.t1
Valid prediction for GeneMark_model.89009_t
Valid prediction for snap_scaffold_22-snap.1960-T1
Valid prediction for snap_scaffold_22-snap.1957-T1
Valid prediction for GeneMark_model.89029_t
Valid prediction for GeneMark_model.88996_t
Valid prediction for GlimmerHMM_glimmerT_51258-T1
Valid prediction for GeneMark_model.88994_t
Valid prediction for pasa_asmbl_29595.p1
Valid prediction for snap_scaffold_22-snap.1975-T1
Valid prediction for Augustus_model.g34360.t1
Valid prediction for GeneMark_model.89012_t
Valid prediction for snap_scaffold_22-snap.1951-T1
Valid prediction for snap_scaffold_22-snap.1972-T1
Valid prediction for snap_scaffold_22-snap.1970-T1
Valid prediction for GeneMark_model.88974_t
Valid prediction for snap_scaffold_22-snap.1991-T1
Valid prediction for GeneMark_model.89005_t
Valid prediction for GlimmerHMM_glimmerT_51248-T1
Valid prediction for GeneMark_model.88990_t
Valid prediction for GeneMark_model.88978_t
Valid prediction for GlimmerHMM_glimmerT_51250-T1
Valid prediction for snap_scaffold_22-snap.1982-T1
Valid prediction for Augustus_model.g34373.t1
Valid prediction for Augustus_model.g34364.t1
Valid prediction for Augustus_model.g34359.t1
Valid prediction for GeneMark_model.89004_t
Valid prediction for snap_scaffold_22-snap.1979-T1
Valid prediction for GeneMark_model.88985_t
Valid prediction for snap_scaffold_22-snap.1994-T1
Valid prediction for GlimmerHMM_glimmerT_51237-T1
Valid prediction for snap_scaffold_22-snap.1981-T1
Valid prediction for Augustus_model.g34365.t1
Valid prediction for snap_scaffold_22-snap.1983-T1
Valid prediction for snap_scaffold_22-snap.1978-T1
Valid prediction for snap_scaffold_22-snap.1961-T1
Valid prediction for GeneMark_model.89000_t
Valid prediction for GlimmerHMM_glimmerT_51249-T1
Valid prediction for GlimmerHMM_glimmerT_51247-T1
Valid prediction for snap_scaffold_22-snap.1965-T1
Valid prediction for snap_scaffold_22-snap.1976-T1
Valid prediction for snap_scaffold_22-snap.1974-T1
Valid prediction for GlimmerHMM_glimmerT_51240-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for HiQ_model.g34369.t1
Valid prediction for GeneMark_model.88991_t
Valid prediction for GlimmerHMM_glimmerT_51242-T1
Valid prediction for GeneMark_model.89015_t
Valid prediction for Augustus_model.g34370.t1
Valid prediction for Augustus_model.g34363.t1
Valid prediction for snap_scaffold_22-snap.1985-T1
Valid prediction for GeneMark_model.88995_t
Valid prediction for GeneMark_model.88993_t
Valid prediction for GeneMark_model.89032_t
Valid prediction for snap_scaffold_22-snap.1998-T1
Valid prediction for CodingQuarry_transcript_34202-T1
Valid prediction for snap_scaffold_22-snap.1966-T1
Valid prediction for snap_scaffold_22-snap.1964-T1
Valid prediction for snap_scaffold_22-snap.1954-T1
Valid prediction for GeneMark_model.89006_t
Valid prediction for GeneMark_model.89030_t
Valid prediction for pasa_asmbl_30316.p1
Valid prediction for GlimmerHMM_glimmerT_51245-T1
Valid prediction for snap_scaffold_22-snap.1989-T1
Valid prediction for GeneMark_model.88975_t
Valid prediction for Augustus_model.g34374.t1
Valid prediction for Augustus_model.g34367.t1
Valid prediction for snap_scaffold_22-snap.2001-T1
Valid prediction for GeneMark_model.89017_t
Valid prediction for GeneMark_model.88999_t
Valid prediction for GeneMark_model.88984_t
Valid prediction for snap_scaffold_22-snap.1971-T1
Valid prediction for GeneMark_model.89003_t
Valid prediction for snap_scaffold_22-snap.1980-T1
Valid prediction for snap_scaffold_22-snap.1953-T1
Valid prediction for GeneMark_model.88982_t
Valid prediction for Augustus_model.g34368.t1
Valid prediction for GeneMark_model.89011_t
Valid prediction for GlimmerHMM_glimmerT_51259-T1
Valid prediction for snap_scaffold_22-snap.1984-T1
Valid prediction for snap_scaffold_22-snap.1986-T1
Valid prediction for GeneMark_model.89026_t
Valid prediction for GeneMark_model.88997_t
Valid prediction for GlimmerHMM_glimmerT_51262-T1
Couldn't classify 65781, 66770
Sorry, prediction pasa_asmbl_30310.p1 fails validation.
(GTA)	 CT	65781-66770	TT	AGT
Valid prediction for GeneMark_model.89021_t
Valid prediction for CodingQuarry_transcript_34200-T1
Valid prediction for HiQ_model.g34372.t1
Valid prediction for GeneMark_model.88977_t
Valid prediction for GeneMark_model.88979_t
Valid prediction for snap_scaffold_22-snap.1973-T1
Valid prediction for GeneMark_model.88976_t
Valid prediction for GlimmerHMM_glimmerT_51261-T1
Valid prediction for snap_scaffold_22-snap.1995-T1
Valid prediction for snap_scaffold_22-snap.2000-T1
Valid prediction for GeneMark_model.89008_t
Valid prediction for snap_scaffold_22-snap.1967-T1
Valid prediction for GeneMark_model.89020_t
Valid prediction for snap_scaffold_22-snap.1959-T1
Valid prediction for GlimmerHMM_glimmerT_51255-T1
Valid prediction for GlimmerHMM_glimmerT_51244-T1
Valid prediction for GeneMark_model.89028_t
Valid prediction for snap_scaffold_22-snap.1977-T1
Valid prediction for snap_scaffold_22-snap.1993-T1
Valid prediction for snap_scaffold_22-snap.1952-T1
Valid prediction for snap_scaffold_22-snap.1955-T1
Valid prediction for snap_scaffold_22-snap.1987-T1
Valid prediction for GeneMark_model.88981_t
Valid prediction for GlimmerHMM_glimmerT_51253-T1
Valid prediction for snap_scaffold_22-snap.1988-T1
Valid prediction for GlimmerHMM_glimmerT_51257-T1
Valid prediction for GeneMark_model.89024_t
Valid prediction for GeneMark_model.88989_t
Valid prediction for GeneMark_model.89014_t
Valid prediction for snap_scaffold_22-snap.1990-T1
Valid prediction for snap_scaffold_22-snap.1958-T1
Valid prediction for GeneMark_model.89013_t
Valid prediction for GlimmerHMM_glimmerT_51254-T1
Valid prediction for snap_scaffold_22-snap.1969-T1
Valid prediction for GeneMark_model.88987_t
Valid prediction for GeneMark_model.89001_t
Valid prediction for Augustus_model.g34371.t1
Valid prediction for Augustus_model.g34362.t1
Valid prediction for GeneMark_model.88988_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16015, rend_intergenic: 1742  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20920, rend_intergenic: 17265  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32727, rend_intergenic: 30176  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39546, rend_intergenic: 34641  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54712, rend_intergenic: 51564  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61376, rend_intergenic: 56358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65999, rend_intergenic: 61728  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70953, rend_intergenic: 69337  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76206, rend_intergenic: 71453  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83466, rend_intergenic: 78884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94929, rend_intergenic: 88336  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114569, rend_intergenic: 113164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124553, rend_intergenic: 115087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133186, rend_intergenic: 128740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169914, rend_intergenic: 167069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178055, rend_intergenic: 174697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180816, rend_intergenic: 178891  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189459, rend_intergenic: 183170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191910, rend_intergenic: 190278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 209479
-exon list size: 935


building trellis

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74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 45 predictions from path traversal
Error with prediction: snap lend_intergenic: 16015, rend_intergenic: 1742  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20920, rend_intergenic: 17265  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32727, rend_intergenic: 30176  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39546, rend_intergenic: 34641  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54712, rend_intergenic: 51564  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61376, rend_intergenic: 56358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65999, rend_intergenic: 61728  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70953, rend_intergenic: 69337  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76206, rend_intergenic: 71453  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83466, rend_intergenic: 78884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94929, rend_intergenic: 88336  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114569, rend_intergenic: 113164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124553, rend_intergenic: 115087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133186, rend_intergenic: 128740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169914, rend_intergenic: 167069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178055, rend_intergenic: 174697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180816, rend_intergenic: 178891  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189459, rend_intergenic: 183170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191910, rend_intergenic: 190278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support