-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_8286245-8559173 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g34280.t1 Valid prediction for snap_scaffold_22-snap.1736-T1 Valid prediction for GeneMark_model.88618_t Valid prediction for GlimmerHMM_glimmerT_51143-T1 Valid prediction for GeneMark_model.88653_t Valid prediction for GlimmerHMM_glimmerT_51139-T1 Valid prediction for GeneMark_model.88682_t Valid prediction for snap_scaffold_22-snap.1764-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for Augustus_model.g34282.t1 Valid prediction for snap_scaffold_22-snap.1732-T1 Valid prediction for GeneMark_model.88614_t Valid prediction for snap_scaffold_22-snap.1726-T1 Valid prediction for GeneMark_model.88616_t Valid prediction for GeneMark_model.88646_t Valid prediction for GeneMark_model.88647_t Valid prediction for GlimmerHMM_glimmerT_51138-T1 Valid prediction for GeneMark_model.88679_t Valid prediction for Augustus_model.g34296.t1 Valid prediction for GeneMark_model.88663_t Valid prediction for GlimmerHMM_glimmerT_51115-T1 Valid prediction for GeneMark_model.88612_t Valid prediction for GeneMark_model.88669_t Valid prediction for snap_scaffold_22-snap.1743-T1 Valid prediction for Augustus_model.g34291.t1 Valid prediction for GeneMark_model.88613_t Valid prediction for GeneMark_model.88607_t Couldn't classify 242946, 242972 Couldn't classify 248789, 248928 Sorry, prediction pasa_asmbl_29565.p1 fails validation. (GGT) AG 242946-242972 GT AGG (GGC) AG 243354-243434 GT CCG (GGC) AG 243600-243662 GT ATG (GGT) AG 243764-243799 GT AGG (GGA) AG 245101-245142 GT AGG (GGG) AG 245245-245337 GT AGG (GGT) AG 245657-245710 GT CTG (GGT) AG 245850-245906 GT GAG (GGC) AG 246351-246395 GT CTG (GGT) AG 246667-246720 GT GGG (GGT) AG 247067-247108 GT TGG (GTT) AG 247274-247367 GT TGG (GTC) AG 248611-248646 GT AGG (GTA) AG 248789-248928 CC GGC -recovered pasa_asmbl_29565.p1, internal, 242946, 242972 -recovered pasa_asmbl_29565.p1, internal, 243354, 243434 -recovered pasa_asmbl_29565.p1, internal, 243600, 243662 -recovered pasa_asmbl_29565.p1, internal, 243764, 243799 -recovered pasa_asmbl_29565.p1, internal, 245101, 245142 -recovered pasa_asmbl_29565.p1, internal, 245245, 245337 -recovered pasa_asmbl_29565.p1, internal, 245657, 245710 -recovered pasa_asmbl_29565.p1, internal, 245850, 245906 -recovered pasa_asmbl_29565.p1, internal, 246351, 246395 -recovered pasa_asmbl_29565.p1, internal, 246667, 246720 -recovered pasa_asmbl_29565.p1, internal, 247067, 247108 -recovered pasa_asmbl_29565.p1, internal, 247274, 247367 -recovered pasa_asmbl_29565.p1, internal, 248611, 248646 Valid prediction for GlimmerHMM_glimmerT_51132-T1 Valid prediction for GeneMark_model.88677_t Valid prediction for snap_scaffold_22-snap.1729-T1 Couldn't classify 251050, 251146 Couldn't classify 252040, 252192 Sorry, prediction pasa_asmbl_29810.p1 fails validation. (CCA) CC 251050-251146 GT AGG (GTA) AG 251448-251552 GT AGG (GTA) AG 251682-251779 GT AGG (GGA) AG 252040-252192 AC GTA -recovered pasa_asmbl_29810.p1, internal, 251448, 251552 -recovered pasa_asmbl_29810.p1, internal, 251682, 251779 Valid prediction for snap_scaffold_22-snap.1750-T1 Valid prediction for snap_scaffold_22-snap.1720-T1 Couldn't classify 260736, 260811 Couldn't classify 261783, 261997 Sorry, prediction pasa_asmbl_29792.p1 fails validation. (CCA) TT 260736-260811 GT TGG (GTT) AG 260971-261099 GT TGG (GCC) AG 261346-261444 GT AGG (GTC) AG 261783-261997 AA GTA -recovered pasa_asmbl_29792.p1, internal, 260971, 261099 -recovered pasa_asmbl_29792.p1, internal, 261346, 261444 Valid prediction for snap_scaffold_22-snap.1731-T1 Valid prediction for snap_scaffold_22-snap.1756-T1 Valid prediction for GlimmerHMM_glimmerT_51111-T1 Valid prediction for GlimmerHMM_glimmerT_51126-T1 Valid prediction for GeneMark_model.88674_t Valid prediction for GeneMark_model.88661_t Valid prediction for snap_scaffold_22-snap.1745-T1 Valid prediction for snap_scaffold_22-snap.1762-T1 Valid prediction for GlimmerHMM_glimmerT_51109-T1 Valid prediction for snap_scaffold_22-snap.1713-T1 Valid prediction for GlimmerHMM_glimmerT_51129-T1 Valid prediction for GeneMark_model.88633_t Valid prediction for snap_scaffold_22-snap.1723-T1 Valid prediction for GeneMark_model.88640_t Valid prediction for GeneMark_model.88664_t Valid prediction for Augustus_model.g34297.t1 Valid prediction for GeneMark_model.88692_t Valid prediction for snap_scaffold_22-snap.1727-T1 Valid prediction for snap_scaffold_22-snap.1752-T1 Valid prediction for snap_scaffold_22-snap.1751-T1 Valid prediction for GlimmerHMM_glimmerT_51110-T1 Valid prediction for snap_scaffold_22-snap.1755-T1 Valid prediction for snap_scaffold_22-snap.1737-T1 Valid prediction for snap_scaffold_22-snap.1758-T1 Valid prediction for snap_scaffold_22-snap.1746-T1 Valid prediction for GlimmerHMM_glimmerT_51144-T1 Valid prediction for GlimmerHMM_glimmerT_51116-T1 Valid prediction for snap_scaffold_22-snap.1749-T1 Valid prediction for GeneMark_model.88657_t Valid prediction for Augustus_model.g34284.t1 Valid prediction for snap_scaffold_22-snap.1724-T1 Valid prediction for GeneMark_model.88630_t Valid prediction for snap_scaffold_22-snap.1774-T1 Valid prediction for GlimmerHMM_glimmerT_51142-T1 Valid prediction for GeneMark_model.88642_t Valid prediction for Augustus_model.g34295.t1 Couldn't classify 108765, 108801 Sorry, prediction pasa_asmbl_29564.p1 fails validation. (GGA) AA 108765-108801 GT GAG (GTA) AG 110638-111533 CA GAC -recovered pasa_asmbl_29564.p1, terminal, 110638, 111533 Valid prediction for GlimmerHMM_glimmerT_51117-T1 Valid prediction for GeneMark_model.88611_t Valid prediction for GlimmerHMM_glimmerT_51118-T1 Couldn't classify 110949, 111299 Couldn't classify 111456, 111533 Sorry, prediction CodingQuarry_transcript_34185-T1 fails validation. (ATG) CC 110949-111299 CT GCC (CTC) AC 111456-111533 CA GAC Valid prediction for snap_scaffold_22-snap.1721-T1 Valid prediction for snap_scaffold_22-snap.1769-T1 Valid prediction for GeneMark_model.88605_t Valid prediction for snap_scaffold_22-snap.1734-T1 Valid prediction for GeneMark_model.88649_t Valid prediction for snap_scaffold_22-snap.1722-T1 Valid prediction for Augustus_model.g34293.t1 Couldn't classify 255136, 255188 Sorry, prediction pasa_asmbl_29568.p2 fails validation. (AGG) CA 255136-255188 GT AGG (GGT) AG 256052-256178 GT AGG (GTG) AG 256292-256471 GT AGG (GTC) AG 256625-256639 GC AGG -recovered pasa_asmbl_29568.p2, terminal, 256625, 256639 -recovered pasa_asmbl_29568.p2, internal, 256052, 256178 -recovered pasa_asmbl_29568.p2, internal, 256292, 256471 -recovered pasa_asmbl_29568.p2, internal, 256625, 256639 Valid prediction for GeneMark_model.88676_t Valid prediction for GeneMark_model.88651_t Valid prediction for GlimmerHMM_glimmerT_51136-T1 Valid prediction for GeneMark_model.88627_t Valid prediction for GeneMark_model.88638_t Valid prediction for snap_scaffold_22-snap.1719-T1 Valid prediction for CodingQuarry_transcript_34192-T1 Valid prediction for GeneMark_model.88626_t Valid prediction for GeneMark_model.88659_t Valid prediction for GeneMark_model.88696_t Valid prediction for Augustus_model.g34278.t1 Valid prediction for GeneMark_model.88691_t Valid prediction for GeneMark_model.88690_t Couldn't classify 249244, 249316 Couldn't classify 251054, 251064 Sorry, prediction pasa_asmbl_29566.p1 fails validation. (TGT) CC 249244-249316 GT AGG (GAT) AG 249511-249581 GT CTG (GGT) AG 250135-250326 GT CCG (GGT) AG 250727-250895 GT AGG (GAG) AG 251054-251064 GA GGG -recovered pasa_asmbl_29566.p1, internal, 249511, 249581 -recovered pasa_asmbl_29566.p1, internal, 250135, 250326 -recovered pasa_asmbl_29566.p1, internal, 250727, 250895 Valid prediction for GlimmerHMM_glimmerT_51120-T1 Couldn't classify 252881, 252941 Couldn't classify 253950, 254005 Sorry, prediction pasa_asmbl_29567.p1 fails validation. (TCA) GA 252881-252941 GT TGG (GGT) AG 253127-253294 GT TGG (GTG) AG 253522-253611 GT AGG (GTG) AG 253950-254005 AG GAA -recovered pasa_asmbl_29567.p1, internal, 253127, 253294 -recovered pasa_asmbl_29567.p1, internal, 253522, 253611 Valid prediction for GeneMark_model.88684_t Valid prediction for GlimmerHMM_glimmerT_51135-T1 Valid prediction for GeneMark_model.88671_t Valid prediction for GeneMark_model.88621_t Valid prediction for GeneMark_model.88688_t Valid prediction for GeneMark_model.88667_t Valid prediction for Augustus_model.g34281.t1 Valid prediction for GeneMark_model.88666_t Valid prediction for GeneMark_model.88655_t Valid prediction for GlimmerHMM_glimmerT_51140-T1 Valid prediction for Augustus_model.g34279.t1 Valid prediction for GlimmerHMM_glimmerT_51134-T1 Valid prediction for snap_scaffold_22-snap.1771-T1 Valid prediction for snap_scaffold_22-snap.1740-T1 Valid prediction for GeneMark_model.88619_t Valid prediction for GeneMark_model.88608_t Valid prediction for Augustus_model.g34287.t1 Valid prediction for GeneMark_model.88656_t Valid prediction for snap_scaffold_22-snap.1739-T1 Valid prediction for GeneMark_model.88635_t Valid prediction for snap_scaffold_22-snap.1760-T1 Valid prediction for GeneMark_model.88672_t Valid prediction for GeneMark_model.88694_t Valid prediction for snap_scaffold_22-snap.1714-T1 Valid prediction for GeneMark_model.88644_t Valid prediction for Augustus_model.g34274.t1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_22-snap.1716-T1 Valid prediction for CodingQuarry_transcript_34186-T1 Valid prediction for Augustus_model.g34275.t1 Couldn't classify 47433, 47505 Sorry, prediction GeneMark_model.88685_t fails validation. (AAA) AG 47433-47505 GT AGG (ACA) AG 47621-47727 GT ACG (ACA) AG 47758-47769 GT CGG (GTG) AG 47805-48122 GT TGG (GCT) AG 48147-48188 GT ACG (AGG) AG 48229-48310 AC AAA -recovered GeneMark_model.88685_t, terminal, 48229, 48310 -recovered GeneMark_model.88685_t, internal, 47433, 47505 -recovered GeneMark_model.88685_t, internal, 47621, 47727 -recovered GeneMark_model.88685_t, internal, 47758, 47769 -recovered GeneMark_model.88685_t, internal, 47805, 48122 -recovered GeneMark_model.88685_t, internal, 48147, 48188 Valid prediction for Augustus_model.g34288.t1 Valid prediction for GeneMark_model.88686_t Valid prediction for snap_scaffold_22-snap.1757-T1 Valid prediction for GeneMark_model.88602_t Valid prediction for GlimmerHMM_glimmerT_51119-T1 Valid prediction for snap_scaffold_22-snap.1742-T1 Valid prediction for GeneMark_model.88658_t Valid prediction for snap_scaffold_22-snap.1765-T1 Valid prediction for GeneMark_model.88665_t Valid prediction for snap_scaffold_22-snap.1718-T1 Valid prediction for GeneMark_model.88670_t Valid prediction for snap_scaffold_22-snap.1735-T1 Valid prediction for GeneMark_model.88624_t Valid prediction for GlimmerHMM_glimmerT_51121-T1 Valid prediction for GlimmerHMM_glimmerT_51141-T1 Valid prediction for snap_scaffold_22-snap.1748-T1 Valid prediction for GeneMark_model.88606_t Valid prediction for GeneMark_model.88695_t Valid prediction for GeneMark_model.88637_t Valid prediction for snap_scaffold_22-snap.1761-T1 Valid prediction for Augustus_model.g34283.t1 Valid prediction for GeneMark_model.88629_t Valid prediction for snap_scaffold_22-snap.1744-T1 Valid prediction for GlimmerHMM_glimmerT_51128-T1 Valid prediction for GlimmerHMM_glimmerT_51113-T1 Valid prediction for snap_scaffold_22-snap.1717-T1 Valid prediction for Augustus_model.g34285.t1 Valid prediction for Augustus_model.g34286.t1 Valid prediction for GlimmerHMM_glimmerT_51130-T1 Valid prediction for GeneMark_model.88680_t Valid prediction for Augustus_model.g34294.t1 Valid prediction for GeneMark_model.88631_t Valid prediction for CodingQuarry_transcript_34190-T1 Couldn't classify 131593, 131622 Couldn't classify 136426, 136608 Sorry, prediction pasa_asmbl_30250.p1 fails validation. (CGT) NN 131593-131622 GT CCG (GGG) AG 131773-131835 GT GGG (GGG) AG 131944-131988 GT AGG (GGG) AG 132109-132162 GT AGG (GGC) AG 132533-132602 GT AGG (GTC) AG 132760-132870 GT TGG (GTC) AG 133215-133364 GT TGG (ACG) AG 134768-134863 GT AGG (GGG) AG 135586-135743 GT CTG (GGG) AG 136007-136189 GT CTG (GGA) AG 136426-136608 GG CAG -recovered pasa_asmbl_30250.p1, internal, 131773, 131835 -recovered pasa_asmbl_30250.p1, internal, 131944, 131988 -recovered pasa_asmbl_30250.p1, internal, 132109, 132162 -recovered pasa_asmbl_30250.p1, internal, 132533, 132602 -recovered pasa_asmbl_30250.p1, internal, 132760, 132870 -recovered pasa_asmbl_30250.p1, internal, 133215, 133364 -recovered pasa_asmbl_30250.p1, internal, 134768, 134863 -recovered pasa_asmbl_30250.p1, internal, 135586, 135743 -recovered pasa_asmbl_30250.p1, internal, 136007, 136189 Valid prediction for GeneMark_model.88683_t Couldn't classify 269832, 271388 Sorry, prediction pasa_asmbl_30242.p1 fails validation. (ATG) TG 269055-269318 GT AGG (CTG) AG 269603-269737 GT TCG (GTG) AG 269832-271388 CC CCC -recovered pasa_asmbl_30242.p1, initial, 269055, 269318 -recovered pasa_asmbl_30242.p1, internal, 269603, 269737 Valid prediction for GeneMark_model.88645_t Valid prediction for snap_scaffold_22-snap.1733-T1 Valid prediction for snap_scaffold_22-snap.1725-T1 Valid prediction for GeneMark_model.88632_t Valid prediction for snap_scaffold_22-snap.1715-T1 Valid prediction for snap_scaffold_22-snap.1730-T1 Valid prediction for Augustus_model.g34276.t1 Valid prediction for snap_scaffold_22-snap.1747-T1 Valid prediction for snap_scaffold_22-snap.1759-T1 Valid prediction for snap_scaffold_22-snap.1767-T1 Valid prediction for GeneMark_model.88678_t Valid prediction for GeneMark_model.88654_t Valid prediction for GeneMark_model.88617_t Valid prediction for pasa_asmbl_30245.p1 Valid prediction for GeneMark_model.88662_t Valid prediction for GeneMark_model.88622_t Valid prediction for snap_scaffold_22-snap.1753-T1 Valid prediction for Augustus_model.g34292.t1 Valid prediction for GeneMark_model.88675_t Valid prediction for CodingQuarry_transcript_34191-T1 Valid prediction for GeneMark_model.88689_t Valid prediction for GeneMark_model.88652_t Valid prediction for GlimmerHMM_glimmerT_51107-T1 Valid prediction for GeneMark_model.88634_t Valid prediction for GlimmerHMM_glimmerT_51123-T1 Valid prediction for GeneMark_model.88625_t Valid prediction for CodingQuarry_transcript_34189-T1 Valid prediction for snap_scaffold_22-snap.1763-T1 Valid prediction for snap_scaffold_22-snap.1728-T1 Valid prediction for GeneMark_model.88643_t Valid prediction for snap_scaffold_22-snap.1738-T1 Valid prediction for GeneMark_model.88687_t Valid prediction for GeneMark_model.88601_t Couldn't classify 147847, 147955 Couldn't classify 150447, 150640 Sorry, prediction pasa_asmbl_30522.p1 fails validation. (GGC) CA 147847-147955 GT AGG (GTC) AG 148063-148134 GT AGG (GTC) AG 148288-148407 GT AGG (GTG) AG 148622-148738 GT AGG (GTT) AG 148911-149072 GT AGG (GCC) AG 149336-149434 GT AGG (GTC) AG 149826-149972 GT AGG (GTC) AG 150209-150325 GT AGG (GTG) AG 150447-150640 AA GTA -recovered pasa_asmbl_30522.p1, internal, 148063, 148134 -recovered pasa_asmbl_30522.p1, internal, 148288, 148407 -recovered pasa_asmbl_30522.p1, internal, 148622, 148738 -recovered pasa_asmbl_30522.p1, internal, 148911, 149072 -recovered pasa_asmbl_30522.p1, internal, 149336, 149434 -recovered pasa_asmbl_30522.p1, internal, 149826, 149972 -recovered pasa_asmbl_30522.p1, internal, 150209, 150325 Valid prediction for GlimmerHMM_glimmerT_51124-T1 Valid prediction for snap_scaffold_22-snap.1772-T1 Valid prediction for GeneMark_model.88620_t Valid prediction for GlimmerHMM_glimmerT_51125-T1 Valid prediction for GeneMark_model.88609_t Valid prediction for GeneMark_model.88650_t Valid prediction for snap_scaffold_22-snap.1770-T1 Valid prediction for GlimmerHMM_glimmerT_51127-T1 Valid prediction for GlimmerHMM_glimmerT_51137-T1 Valid prediction for GlimmerHMM_glimmerT_51122-T1 Valid prediction for GlimmerHMM_glimmerT_51114-T1 Couldn't classify 157060, 157199 Sorry, prediction pasa_asmbl_30246.p2 fails validation. (GTG) GC 157060-157199 GT TGG (TAA) AG 157976-158134 GT AGG (TGC) AG 158358-158574 GG GAG -recovered pasa_asmbl_30246.p2, terminal, 158358, 158574 -recovered pasa_asmbl_30246.p2, internal, 157976, 158134 Valid prediction for snap_scaffold_22-snap.1754-T1 Valid prediction for snap_scaffold_22-snap.1741-T1 Valid prediction for GeneMark_model.88681_t Valid prediction for GeneMark_model.88668_t Valid prediction for GeneMark_model.88693_t Valid prediction for GeneMark_model.88660_t Valid prediction for GeneMark_model.88673_t Valid prediction for GlimmerHMM_glimmerT_51108-T1 Valid prediction for GeneMark_model.88615_t Couldn't classify 140872, 140938 Couldn't classify 146683, 146748 Sorry, prediction pasa_asmbl_30249.p1 fails validation. (CCA) GT 140872-140938 GT GGG (GTT) AG 141666-141884 GT TGG (GTT) AG 142295-142456 GT AGG (GTT) AG 145326-145496 GT GGG (GTG) AG 145725-145868 GT AGG (GTG) AG 146094-146216 GT AGG (GTG) AG 146304-146485 GT GGG (GGT) AG 146683-146748 AA GTA -recovered pasa_asmbl_30249.p1, internal, 141666, 141884 -recovered pasa_asmbl_30249.p1, internal, 142295, 142456 -recovered pasa_asmbl_30249.p1, internal, 145326, 145496 -recovered pasa_asmbl_30249.p1, internal, 145725, 145868 -recovered pasa_asmbl_30249.p1, internal, 146094, 146216 -recovered pasa_asmbl_30249.p1, internal, 146304, 146485 Valid prediction for Augustus_model.g34277.t1 Valid prediction for CodingQuarry_transcript_34187-T1 Valid prediction for Augustus_model.g34289.t1 Valid prediction for GeneMark_model.88636_t Valid prediction for CodingQuarry_transcript_34188-T1 Valid prediction for GeneMark_model.88641_t Valid prediction for HiQ_model.g34290.t1 Valid prediction for snap_scaffold_22-snap.1773-T1 Valid prediction for GeneMark_model.88639_t Valid prediction for GlimmerHMM_glimmerT_51133-T1 Valid prediction for GlimmerHMM_glimmerT_51112-T1 Valid prediction for GlimmerHMM_glimmerT_51131-T1 Valid prediction for GeneMark_model.88648_t Valid prediction for snap_scaffold_22-snap.1768-T1 Valid prediction for GeneMark_model.88610_t Valid prediction for GeneMark_model.88628_t Valid prediction for GeneMark_model.88603_t Valid prediction for snap_scaffold_22-snap.1766-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17698, rend_intergenic: 9658 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59950, rend_intergenic: 49365 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 65229, rend_intergenic: 64168 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 70219, rend_intergenic: 68507 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75351, rend_intergenic: 73540 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93326, rend_intergenic: 75373 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 95892, rend_intergenic: 93675 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 101931, rend_intergenic: 95919 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 109169, rend_intergenic: 105542 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 116668, rend_intergenic: 114417 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 123646, rend_intergenic: 120135 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 128047, rend_intergenic: 123879 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154611, rend_intergenic: 130268 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157775, rend_intergenic: 155719 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 182692, rend_intergenic: 161765 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 187192, rend_intergenic: 184002 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 194411, rend_intergenic: 187349 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 199409, rend_intergenic: 194783 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 207058, rend_intergenic: 202379 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 208728, rend_intergenic: 207460 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 255195, rend_intergenic: 220987 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 256187, rend_intergenic: 255253 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 261774, rend_intergenic: 259730 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 263367, rend_intergenic: 262612 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 272929 -exon list size: 1415 building trellis 0.1 0.1 0.2 0.3 0.4 0.4 0.5 0.6 0.6 0.7 0.8 0.8 0.9 1.0 1.1 1.1 1.2 1.3 1.3 1.4 1.5 1.6 1.6 1.7 1.8 1.8 1.9 2.0 2.0 2.1 2.2 2.3 2.3 2.4 2.5 2.5 2.6 2.7 2.8 2.8 2.9 3.0 3.0 3.1 3.2 3.2 3.3 3.4 3.5 3.5 3.6 3.7 3.7 3.8 3.9 4.0 4.0 4.1 4.2 4.2 4.3 4.4 4.4 4.5 4.6 4.7 4.7 4.8 4.9 4.9 5.0 5.1 5.2 5.2 5.3 5.4 5.4 5.5 5.6 5.6 5.7 5.8 5.9 5.9 6.0 6.1 6.1 6.2 6.3 6.4 6.4 6.5 6.6 6.6 6.7 6.8 6.8 6.9 7.0 7.1 7.1 7.2 7.3 7.3 7.4 7.5 7.6 7.6 7.7 7.8 7.8 7.9 8.0 8.0 8.1 8.2 8.3 8.3 8.4 8.5 8.5 8.6 8.7 8.8 8.8 8.9 9.0 9.0 9.1 9.2 9.2 9.3 9.4 9.5 9.5 9.6 9.7 9.7 9.8 9.9 10.0 10.0 10.1 10.2 10.2 10.3 10.4 10.4 10.5 10.6 10.7 10.7 10.8 10.9 10.9 11.0 11.1 11.2 11.2 11.3 11.4 11.4 11.5 11.6 11.6 11.7 11.8 11.9 11.9 12.0 12.1 12.1 12.2 12.3 12.4 12.4 12.5 12.6 12.6 12.7 12.8 12.8 12.9 13.0 13.1 13.1 13.2 13.3 13.3 13.4 13.5 13.5 13.6 13.7 13.8 13.8 13.9 14.0 14.0 14.1 14.2 14.3 14.3 14.4 14.5 14.5 14.6 14.7 14.7 14.8 14.9 15.0 15.0 15.1 15.2 15.2 15.3 15.4 15.5 15.5 15.6 15.7 15.7 15.8 15.9 15.9 16.0 16.1 16.2 16.2 16.3 16.4 16.4 16.5 16.6 16.7 16.7 16.8 16.9 16.9 17.0 17.1 17.1 17.2 17.3 17.4 17.4 17.5 17.6 17.6 17.7 17.8 17.9 17.9 18.0 18.1 18.1 18.2 18.3 18.3 18.4 18.5 18.6 18.6 18.7 18.8 18.8 18.9 19.0 19.1 19.1 19.2 19.3 19.3 19.4 19.5 19.5 19.6 19.7 19.8 19.8 19.9 20.0 20.0 20.1 20.2 20.3 20.3 20.4 20.5 20.5 20.6 20.7 20.7 20.8 20.9 21.0 21.0 21.1 21.2 21.2 21.3 21.4 21.5 21.5 21.6 21.7 21.7 21.8 21.9 21.9 22.0 22.1 22.2 22.2 22.3 22.4 22.4 22.5 22.6 22.7 22.7 22.8 22.9 22.9 23.0 23.1 23.1 23.2 23.3 23.4 23.4 23.5 23.6 23.6 23.7 23.8 23.9 23.9 24.0 24.1 24.1 24.2 24.3 24.3 24.4 24.5 24.6 24.6 24.7 24.8 24.8 24.9 25.0 25.1 25.1 25.2 25.3 25.3 25.4 25.5 25.5 25.6 25.7 25.8 25.8 25.9 26.0 26.0 26.1 26.2 26.3 26.3 26.4 26.5 26.5 26.6 26.7 26.7 26.8 26.9 27.0 27.0 27.1 27.2 27.2 27.3 27.4 27.5 27.5 27.6 27.7 27.7 27.8 27.9 27.9 28.0 28.1 28.2 28.2 28.3 28.4 28.4 28.5 28.6 28.7 28.7 28.8 28.9 28.9 29.0 29.1 29.1 29.2 29.3 29.4 29.4 29.5 29.6 29.6 29.7 29.8 29.9 29.9 30.0 30.1 30.1 30.2 30.3 30.3 30.4 30.5 30.6 30.6 30.7 30.8 30.8 30.9 31.0 31.1 31.1 31.2 31.3 31.3 31.4 31.5 31.5 31.6 31.7 31.8 31.8 31.9 32.0 32.0 32.1 32.2 32.3 32.3 32.4 32.5 32.5 32.6 32.7 32.7 32.8 32.9 33.0 33.0 33.1 33.2 33.2 33.3 33.4 33.5 33.5 33.6 33.7 33.7 33.8 33.9 33.9 34.0 34.1 34.2 34.2 34.3 34.4 34.4 34.5 34.6 34.7 34.7 34.8 34.9 34.9 35.0 35.1 35.1 35.2 35.3 35.4 35.4 35.5 35.6 35.6 35.7 35.8 35.9 35.9 36.0 36.1 36.1 36.2 36.3 36.3 36.4 36.5 36.6 36.6 36.7 36.8 36.8 36.9 37.0 37.1 37.1 37.2 37.3 37.3 37.4 37.5 37.5 37.6 37.7 37.8 37.8 37.9 38.0 38.0 38.1 38.2 38.2 38.3 38.4 38.5 38.5 38.6 38.7 38.7 38.8 38.9 39.0 39.0 39.1 39.2 39.2 39.3 39.4 39.4 39.5 39.6 39.7 39.7 39.8 39.9 39.9 40.0 40.1 40.2 40.2 40.3 40.4 40.4 40.5 40.6 40.6 40.7 40.8 40.9 40.9 41.0 41.1 41.1 41.2 41.3 41.4 41.4 41.5 41.6 41.6 41.7 41.8 41.8 41.9 42.0 42.1 42.1 42.2 42.3 42.3 42.4 42.5 42.6 42.6 42.7 42.8 42.8 42.9 43.0 43.0 43.1 43.2 43.3 43.3 43.4 43.5 43.5 43.6 43.7 43.8 43.8 43.9 44.0 44.0 44.1 44.2 44.2 44.3 44.4 44.5 44.5 44.6 44.7 44.7 44.8 44.9 45.0 45.0 45.1 45.2 45.2 45.3 45.4 45.4 45.5 45.6 45.7 45.7 45.8 45.9 45.9 46.0 46.1 46.2 46.2 46.3 46.4 46.4 46.5 46.6 46.6 46.7 46.8 46.9 46.9 47.0 47.1 47.1 47.2 47.3 47.4 47.4 47.5 47.6 47.6 47.7 47.8 47.8 47.9 48.0 48.1 48.1 48.2 48.3 48.3 48.4 48.5 48.6 48.6 48.7 48.8 48.8 48.9 49.0 49.0 49.1 49.2 49.3 49.3 49.4 49.5 49.5 49.6 49.7 49.8 49.8 49.9 50.0 50.0 50.1 50.2 50.2 50.3 50.4 50.5 50.5 50.6 50.7 50.7 50.8 50.9 51.0 51.0 51.1 51.2 51.2 51.3 51.4 51.4 51.5 51.6 51.7 51.7 51.8 51.9 51.9 52.0 52.1 52.2 52.2 52.3 52.4 52.4 52.5 52.6 52.6 52.7 52.8 52.9 52.9 53.0 53.1 53.1 53.2 53.3 53.4 53.4 53.5 53.6 53.6 53.7 53.8 53.8 53.9 54.0 54.1 54.1 54.2 54.3 54.3 54.4 54.5 54.6 54.6 54.7 54.8 54.8 54.9 55.0 55.0 55.1 55.2 55.3 55.3 55.4 55.5 55.5 55.6 55.7 55.8 55.8 55.9 56.0 56.0 56.1 56.2 56.2 56.3 56.4 56.5 56.5 56.6 56.7 56.7 56.8 56.9 57.0 57.0 57.1 57.2 57.2 57.3 57.4 57.4 57.5 57.6 57.7 57.7 57.8 57.9 57.9 58.0 58.1 58.2 58.2 58.3 58.4 58.4 58.5 58.6 58.6 58.7 58.8 58.9 58.9 59.0 59.1 59.1 59.2 59.3 59.4 59.4 59.5 59.6 59.6 59.7 59.8 59.8 59.9 60.0 60.1 60.1 60.2 60.3 60.3 60.4 60.5 60.6 60.6 60.7 60.8 60.8 60.9 61.0 61.0 61.1 61.2 61.3 61.3 61.4 61.5 61.5 61.6 61.7 61.8 61.8 61.9 62.0 62.0 62.1 62.2 62.2 62.3 62.4 62.5 62.5 62.6 62.7 62.7 62.8 62.9 62.9 63.0 63.1 63.2 63.2 63.3 63.4 63.4 63.5 63.6 63.7 63.7 63.8 63.9 63.9 64.0 64.1 64.1 64.2 64.3 64.4 64.4 64.5 64.6 64.6 64.7 64.8 64.9 64.9 65.0 65.1 65.1 65.2 65.3 65.3 65.4 65.5 65.6 65.6 65.7 65.8 65.8 65.9 66.0 66.1 66.1 66.2 66.3 66.3 66.4 66.5 66.5 66.6 66.7 66.8 66.8 66.9 67.0 67.0 67.1 67.2 67.3 67.3 67.4 67.5 67.5 67.6 67.7 67.7 67.8 67.9 68.0 68.0 68.1 68.2 68.2 68.3 68.4 68.5 68.5 68.6 68.7 68.7 68.8 68.9 68.9 69.0 69.1 69.2 69.2 69.3 69.4 69.4 69.5 69.6 69.7 69.7 69.8 69.9 69.9 70.0 70.1 70.1 70.2 70.3 70.4 70.4 70.5 70.6 70.6 70.7 70.8 70.9 70.9 71.0 71.1 71.1 71.2 71.3 71.3 71.4 71.5 71.6 71.6 71.7 71.8 71.8 71.9 72.0 72.1 72.1 72.2 72.3 72.3 72.4 72.5 72.5 72.6 72.7 72.8 72.8 72.9 73.0 73.0 73.1 73.2 73.3 73.3 73.4 73.5 73.5 73.6 73.7 73.7 73.8 73.9 74.0 74.0 74.1 74.2 74.2 74.3 74.4 74.5 74.5 74.6 74.7 74.7 74.8 74.9 74.9 75.0 75.1 75.2 75.2 75.3 75.4 75.4 75.5 75.6 75.7 75.7 75.8 75.9 75.9 76.0 76.1 76.1 76.2 76.3 76.4 76.4 76.5 76.6 76.6 76.7 76.8 76.9 76.9 77.0 77.1 77.1 77.2 77.3 77.3 77.4 77.5 77.6 77.6 77.7 77.8 77.8 77.9 78.0 78.1 78.1 78.2 78.3 78.3 78.4 78.5 78.5 78.6 78.7 78.8 78.8 78.9 79.0 79.0 79.1 79.2 79.3 79.3 79.4 79.5 79.5 79.6 79.7 79.7 79.8 79.9 80.0 80.0 80.1 80.2 80.2 80.3 80.4 80.5 80.5 80.6 80.7 80.7 80.8 80.9 80.9 81.0 81.1 81.2 81.2 81.3 81.4 81.4 81.5 81.6 81.7 81.7 81.8 81.9 81.9 82.0 82.1 82.1 82.2 82.3 82.4 82.4 82.5 82.6 82.6 82.7 82.8 82.9 82.9 83.0 83.1 83.1 83.2 83.3 83.3 83.4 83.5 83.6 83.6 83.7 83.8 83.8 83.9 84.0 84.1 84.1 84.2 84.3 84.3 84.4 84.5 84.5 84.6 84.7 84.8 84.8 84.9 85.0 85.0 85.1 85.2 85.3 85.3 85.4 85.5 85.5 85.6 85.7 85.7 85.8 85.9 86.0 86.0 86.1 86.2 86.2 86.3 86.4 86.5 86.5 86.6 86.7 86.7 86.8 86.9 86.9 87.0 87.1 87.2 87.2 87.3 87.4 87.4 87.5 87.6 87.6 87.7 87.8 87.9 87.9 88.0 88.1 88.1 88.2 88.3 88.4 88.4 88.5 88.6 88.6 88.7 88.8 88.8 88.9 89.0 89.1 89.1 89.2 89.3 89.3 89.4 89.5 89.6 89.6 89.7 89.8 89.8 89.9 90.0 90.0 90.1 90.2 90.3 90.3 90.4 90.5 90.5 90.6 90.7 90.8 90.8 90.9 91.0 91.0 91.1 91.2 91.2 91.3 91.4 91.5 91.5 91.6 91.7 91.7 91.8 91.9 92.0 92.0 92.1 92.2 92.2 92.3 92.4 92.4 92.5 92.6 92.7 92.7 92.8 92.9 92.9 93.0 93.1 93.2 93.2 93.3 93.4 93.4 93.5 93.6 93.6 93.7 93.8 93.9 93.9 94.0 94.1 94.1 94.2 94.3 94.4 94.4 94.5 94.6 94.6 94.7 94.8 94.8 94.9 95.0 95.1 95.1 95.2 95.3 95.3 95.4 95.5 95.6 95.6 95.7 95.8 95.8 95.9 96.0 96.0 96.1 96.2 96.3 96.3 96.4 96.5 96.5 96.6 96.7 96.8 96.8 96.9 97.0 97.0 97.1 97.2 97.2 97.3 97.4 97.5 97.5 97.6 97.7 97.7 97.8 97.9 98.0 98.0 98.1 98.2 98.2 98.3 98.4 98.4 98.5 98.6 98.7 98.7 98.8 98.9 98.9 99.0 99.1 99.2 99.2 99.3 99.4 99.4 99.5 99.6 99.6 99.7 99.8 99.9 99.9 -found 58 predictions from path traversal Error with prediction: snap lend_intergenic: 17698, rend_intergenic: 9658 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59950, rend_intergenic: 49365 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 65229, rend_intergenic: 64168 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 70219, rend_intergenic: 68507 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75351, rend_intergenic: 73540 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93326, rend_intergenic: 75373 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 95892, rend_intergenic: 93675 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 101931, rend_intergenic: 95919 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 109169, rend_intergenic: 105542 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 116668, rend_intergenic: 114417 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 123646, rend_intergenic: 120135 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 128047, rend_intergenic: 123879 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154611, rend_intergenic: 130268 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157775, rend_intergenic: 155719 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 182692, rend_intergenic: 161765 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 187192, rend_intergenic: 184002 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 194411, rend_intergenic: 187349 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 199409, rend_intergenic: 194783 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 207058, rend_intergenic: 202379 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 208728, rend_intergenic: 207460 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 255195, rend_intergenic: 220987 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 256187, rend_intergenic: 255253 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 261774, rend_intergenic: 259730 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 263367, rend_intergenic: 262612 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 25 predictions persist after filtering for low support