-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_7120110-7320084

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 116130, 116507
Sorry, prediction pasa_asmbl_29457.p1 fails validation.
(TCG)	 CC	116130-116507	GC	AGG
Valid prediction for snap_scaffold_22-snap.1432-T1
Valid prediction for GlimmerHMM_glimmerT_50934-T1
Valid prediction for GlimmerHMM_glimmerT_50925-T1
Valid prediction for Augustus_model.g34158.t1
Couldn't classify 89695, 89855
Sorry, prediction pasa_asmbl_29453.p1 fails validation.
(ATG)	 AG	88045-88254	GT	AGG
(ATG)	 AG	89207-89378	GT	AGG
(TGA)	 AG	89695-89855	TG	AAT
-recovered pasa_asmbl_29453.p1, initial, 88045, 88254
-recovered pasa_asmbl_29453.p1, initial, 89207, 89378
-recovered pasa_asmbl_29453.p1, internal, 88045, 88254
-recovered pasa_asmbl_29453.p1, internal, 89207, 89378
Valid prediction for Augustus_model.g34159.t1
Valid prediction for GeneMark_model.88235_t
Valid prediction for GeneMark_model.88232_t
Valid prediction for snap_scaffold_22-snap.1451-T1
Couldn't classify 605, 833
Sorry, prediction pasa_asmbl_29450.p1 fails validation.
(CAT)	 AG	605-833	GT	GAG
(CTA)	 AG	3243-3338	GT	ACG
(CGA)	 AG	3831-3926	GT	CGG
(CTG)	 AG	5168-5261	GT	AGG
(GAA)	 AG	6424-6454	GA	AAG
-recovered pasa_asmbl_29450.p1, terminal, 6424, 6454
-recovered pasa_asmbl_29450.p1, internal, 605, 833
-recovered pasa_asmbl_29450.p1, internal, 3243, 3338
-recovered pasa_asmbl_29450.p1, internal, 3831, 3926
-recovered pasa_asmbl_29450.p1, internal, 5168, 5261
Valid prediction for snap_scaffold_22-snap.1464-T1
Valid prediction for GeneMark_model.88272_t
Valid prediction for Augustus_model.g34151.t1
Valid prediction for GeneMark_model.88267_t
Valid prediction for Augustus_model.g34152.t1
Valid prediction for snap_scaffold_22-snap.1455-T1
Valid prediction for GlimmerHMM_glimmerT_50923-T1
Valid prediction for GeneMark_model.88256_t
Valid prediction for GlimmerHMM_glimmerT_50941-T1
Valid prediction for Augustus_model.g34160.t1
Couldn't classify 150852, 150879
Couldn't classify 152622, 152789
Sorry, prediction pasa_asmbl_29459.p1 fails validation.
(GCA)	 GC	150852-150879	GT	CGG
(GCC)	 AG	151724-151839	GT	AGG
(GCG)	 AG	152070-152261	GT	AGG
(GGC)	 AG	152622-152789	TC	AGT
-recovered pasa_asmbl_29459.p1, internal, 151724, 151839
-recovered pasa_asmbl_29459.p1, internal, 152070, 152261
Valid prediction for GeneMark_model.88278_t
Valid prediction for GlimmerHMM_glimmerT_50939-T1
Valid prediction for GlimmerHMM_glimmerT_50922-T1
Valid prediction for GlimmerHMM_glimmerT_50933-T1
Valid prediction for snap_scaffold_22-snap.1460-T1
Couldn't classify 90458, 90476
Couldn't classify 92424, 92662
Sorry, prediction pasa_asmbl_29454.p1 fails validation.
(AGG)	 AG	90458-90476	GT	AGG
(AAG)	 AG	91798-91889	GT	AGG
(AAA)	 AG	92153-92264	GT	AGG
(CCA)	 AG	92424-92662	CC	AGC
-recovered pasa_asmbl_29454.p1, internal, 90458, 90476
-recovered pasa_asmbl_29454.p1, internal, 91798, 91889
-recovered pasa_asmbl_29454.p1, internal, 92153, 92264
Valid prediction for snap_scaffold_22-snap.1459-T1
Valid prediction for GeneMark_model.88252_t
Valid prediction for GlimmerHMM_glimmerT_50928-T1
Valid prediction for snap_scaffold_22-snap.1444-T1
Valid prediction for GlimmerHMM_glimmerT_50944-T1
Valid prediction for snap_scaffold_22-snap.1449-T1
Valid prediction for GeneMark_model.88240_t
Valid prediction for GlimmerHMM_glimmerT_50937-T1
Valid prediction for GeneMark_model.88242_t
Couldn't classify 146292, 146397
Couldn't classify 147836, 147899
Sorry, prediction pasa_asmbl_29811.p1 fails validation.
(CAG)	 AT	146292-146397	GT	TGG
(GCT)	 AG	146685-146838	GT	AGG
(AAG)	 AG	147836-147899	AC	TGA
-recovered pasa_asmbl_29811.p1, terminal, 146685, 146838
-recovered pasa_asmbl_29811.p1, internal, 146685, 146838
Valid prediction for Augustus_model.g34144.t1
Valid prediction for GlimmerHMM_glimmerT_50945-T1
Valid prediction for Augustus_model.g34153.t1
Couldn't classify 92678, 92737
Sorry, prediction pasa_asmbl_29784.p2 fails validation.
(CAG)	 CG	92678-92737	GT	CGG
(AGA)	 AG	93121-93220	GT	AGG
(AGA)	 AG	93390-93574	GA	GAG
-recovered pasa_asmbl_29784.p2, terminal, 93390, 93574
-recovered pasa_asmbl_29784.p2, internal, 93121, 93220
Valid prediction for GlimmerHMM_glimmerT_50932-T1
Valid prediction for GlimmerHMM_glimmerT_50931-T1
Valid prediction for snap_scaffold_22-snap.1463-T1
Valid prediction for GeneMark_model.88270_t
Valid prediction for snap_scaffold_22-snap.1448-T1
Valid prediction for snap_scaffold_22-snap.1461-T1
Valid prediction for Augustus_model.g34143.t1
Valid prediction for GlimmerHMM_glimmerT_50930-T1
Valid prediction for GeneMark_model.88237_t
Valid prediction for Augustus_model.g34157.t1
Valid prediction for Augustus_model.g34162.t1
Valid prediction for snap_scaffold_22-snap.1438-T1
Valid prediction for GeneMark_model.88263_t
Valid prediction for snap_scaffold_22-snap.1445-T1
Valid prediction for GeneMark_model.88274_t
Couldn't classify 110795, 110937
Couldn't classify 115357, 115928
Sorry, prediction pasa_asmbl_29456.p1 fails validation.
(GGC)	 GT	110795-110937	GT	AGG
(GTT)	 AG	111275-111323	GT	AGG
(TAC)	 AG	111645-111791	GT	AAG
(AAC)	 AG	111961-112043	GT	AGG
(TGA)	 AG	114014-114104	GT	AGG
(GTG)	 AG	114250-114333	GT	AGG
(GAC)	 AG	114631-114717	GT	ATG
(ATG)	 AG	115091-115184	GT	GGG
(TGT)	 AG	115357-115928	GA	AGG
-recovered pasa_asmbl_29456.p1, initial, 115091, 115184
-recovered pasa_asmbl_29456.p1, internal, 111275, 111323
-recovered pasa_asmbl_29456.p1, internal, 111645, 111791
-recovered pasa_asmbl_29456.p1, internal, 111961, 112043
-recovered pasa_asmbl_29456.p1, internal, 114014, 114104
-recovered pasa_asmbl_29456.p1, internal, 114250, 114333
-recovered pasa_asmbl_29456.p1, internal, 114631, 114717
-recovered pasa_asmbl_29456.p1, internal, 115091, 115184
Valid prediction for Augustus_model.g34150.t1
Valid prediction for GeneMark_model.88277_t
Valid prediction for snap_scaffold_22-snap.1440-T1
Couldn't classify 170581, 170721
Sorry, prediction pasa_asmbl_29806.p1 fails validation.
(CCA)	 AT	170581-170721	GT	AGG
(GTT)	 AG	173031-173169	GT	CGG
(GGG)	 AG	174106-174231	GT	GGG
(ACC)	 AG	175526-175626	AA	AGA
-recovered pasa_asmbl_29806.p1, terminal, 175526, 175626
-recovered pasa_asmbl_29806.p1, internal, 173031, 173169
-recovered pasa_asmbl_29806.p1, internal, 174106, 174231
Valid prediction for Augustus_model.g34155.t1
Valid prediction for GeneMark_model.88254_t
Valid prediction for GeneMark_model.88262_t
Couldn't classify 145329, 145376
Couldn't classify 145925, 145975
Sorry, prediction pasa_asmbl_29458.p1 fails validation.
(CAG)	 GG	145329-145376	GT	AGG
(TTC)	 AG	145552-145770	GT	AGG
(GAC)	 AG	145925-145975	GA	ACG
-recovered pasa_asmbl_29458.p1, internal, 145552, 145770
Valid prediction for GeneMark_model.88244_t
Valid prediction for snap_scaffold_22-snap.1436-T1
Valid prediction for GlimmerHMM_glimmerT_50940-T1
Valid prediction for GeneMark_model.88259_t
Valid prediction for GeneMark_model.88246_t
Valid prediction for GeneMark_model.88248_t
Valid prediction for GeneMark_model.88230_t
Valid prediction for snap_scaffold_22-snap.1454-T1
Valid prediction for Augustus_model.g34148.t1
Valid prediction for Augustus_model.g34142.t1
Valid prediction for snap_scaffold_22-snap.1457-T1
Valid prediction for CodingQuarry_transcript_34145-T1
Valid prediction for GeneMark_model.88233_t
Valid prediction for snap_scaffold_22-snap.1468-T1
Valid prediction for GeneMark_model.88265_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_50938-T1
Valid prediction for GeneMark_model.88243_t
Valid prediction for HiQ_model.g34140.t1
Couldn't classify 183867, 183965
Sorry, prediction pasa_asmbl_30145.p1 fails validation.
(ATA)	 CA	183867-183965	GT	TCG
(AGA)	 AG	184567-184678	GT	AGG
(AGG)	 AG	184782-184827	GT	AGG
(AGC)	 AG	185422-185478	GT	AAG
(GGT)	 AG	186123-186290	GT	GGG
(GTT)	 AG	187000-187273	GT	ACG
(GTT)	 AG	187662-187767	GT	GGG
(GTT)	 AG	187976-188094	GC	AGG
(GGC)	 AG	188267-188377	CG	AAC
-recovered pasa_asmbl_30145.p1, terminal, 188267, 188377
-recovered pasa_asmbl_30145.p1, internal, 184567, 184678
-recovered pasa_asmbl_30145.p1, internal, 184782, 184827
-recovered pasa_asmbl_30145.p1, internal, 185422, 185478
-recovered pasa_asmbl_30145.p1, internal, 186123, 186290
-recovered pasa_asmbl_30145.p1, internal, 187000, 187273
-recovered pasa_asmbl_30145.p1, internal, 187662, 187767
-recovered pasa_asmbl_30145.p1, internal, 187976, 188094
Valid prediction for GeneMark_model.88269_t
Valid prediction for snap_scaffold_22-snap.1467-T1
Valid prediction for GlimmerHMM_glimmerT_50935-T1
Couldn't classify 103638, 103757
Couldn't classify 104654, 104838
Sorry, prediction pasa_asmbl_30484.p1 fails validation.
(GTG)	 AG	103638-103757	GT	AGG
(TCC)	 AG	104039-104150	GT	TGG
(GCC)	 AG	104654-104838	GG	CTG
-recovered pasa_asmbl_30484.p1, internal, 103638, 103757
-recovered pasa_asmbl_30484.p1, internal, 104039, 104150
Valid prediction for snap_scaffold_22-snap.1442-T1
Valid prediction for GeneMark_model.88234_t
Valid prediction for GeneMark_model.88261_t
Valid prediction for GeneMark_model.88249_t
Valid prediction for Augustus_model.g34145.t1
Valid prediction for GeneMark_model.88236_t
Valid prediction for snap_scaffold_22-snap.1434-T1
Valid prediction for GeneMark_model.88273_t
Valid prediction for snap_scaffold_22-snap.1452-T1
Valid prediction for GlimmerHMM_glimmerT_50942-T1
Valid prediction for GeneMark_model.88266_t
Valid prediction for snap_scaffold_22-snap.1439-T1
Valid prediction for snap_scaffold_22-snap.1437-T1
Valid prediction for Augustus_model.g34141.t1
Valid prediction for GeneMark_model.88275_t
Valid prediction for GeneMark_model.88238_t
Valid prediction for pasa_asmbl_30144.p1
Valid prediction for GeneMark_model.88251_t
Valid prediction for snap_scaffold_22-snap.1450-T1
Valid prediction for snap_scaffold_22-snap.1453-T1
Valid prediction for snap_scaffold_22-snap.1462-T1
Valid prediction for GeneMark_model.88268_t
Valid prediction for snap_scaffold_22-snap.1458-T1
Valid prediction for GeneMark_model.88253_t
Valid prediction for CodingQuarry_transcript_34142-T1
Valid prediction for GeneMark_model.88276_t
Valid prediction for Augustus_model.g34149.t1
Valid prediction for snap_scaffold_22-snap.1443-T1
Valid prediction for snap_scaffold_22-snap.1433-T1
Valid prediction for GeneMark_model.88241_t
Valid prediction for GeneMark_model.88260_t
Valid prediction for Augustus_model.g34146.t1
Valid prediction for GlimmerHMM_glimmerT_50924-T1
Couldn't classify 60650, 60659
Sorry, prediction pasa_asmbl_30152.p1 fails validation.
(CCC)	 TC	60650-60659	GT	AGG
(GAG)	 AG	61092-61175	GT	CTG
(ACT)	 AG	61349-61498	GT	CGG
(GCA)	 AG	61703-61849	GT	CCG
(ACC)	 AG	62119-62246	GT	AGG
(TAC)	 AG	62476-62653	GT	AGG
(TGA)	 AG	63170-63393	CC	GAC
add_exon() Sorry, pasa_asmbl_30152.p1 62476-62653-terminal-3 is invalid.
-recovered pasa_asmbl_30152.p1, terminal, 62476, 62653
-recovered pasa_asmbl_30152.p1, terminal, 63170, 63393
-recovered pasa_asmbl_30152.p1, internal, 61092, 61175
-recovered pasa_asmbl_30152.p1, internal, 61349, 61498
-recovered pasa_asmbl_30152.p1, internal, 61703, 61849
-recovered pasa_asmbl_30152.p1, internal, 62119, 62246
-recovered pasa_asmbl_30152.p1, internal, 62476, 62653
Valid prediction for GeneMark_model.88247_t
Valid prediction for snap_scaffold_22-snap.1446-T1
Valid prediction for snap_scaffold_22-snap.1456-T1
Valid prediction for CodingQuarry_transcript_34144-T1
Valid prediction for CodingQuarry_transcript_34143-T1
Valid prediction for snap_scaffold_22-snap.1441-T1
Valid prediction for GlimmerHMM_glimmerT_50929-T1
Valid prediction for snap_scaffold_22-snap.1466-T1
Valid prediction for GlimmerHMM_glimmerT_50921-T1
Valid prediction for snap_scaffold_22-snap.1465-T1
Valid prediction for GlimmerHMM_glimmerT_50936-T1
Valid prediction for Augustus_model.g34156.t1
Valid prediction for GeneMark_model.88271_t
Valid prediction for GlimmerHMM_glimmerT_50927-T1
Valid prediction for pasa_asmbl_30151.p1
Valid prediction for GeneMark_model.88239_t
Valid prediction for snap_scaffold_22-snap.1435-T1
Valid prediction for GeneMark_model.88245_t
Valid prediction for HiQ_model.g34154.t1
Valid prediction for GeneMark_model.88264_t
Valid prediction for GlimmerHMM_glimmerT_50943-T1
Valid prediction for HiQ_model.g34147.t1
Valid prediction for snap_scaffold_22-snap.1447-T1
Valid prediction for GeneMark_model.88258_t
Valid prediction for GeneMark_model.88231_t
Valid prediction for GeneMark_model.88255_t
Couldn't classify 101940, 101974
Sorry, prediction pasa_asmbl_30149.p1 fails validation.
(ATG)	 TA	100515-100700	GT	AGG
(GTG)	 AG	101146-101228	GT	AGG
(GTT)	 AG	101650-101786	GT	AGG
(GCA)	 AG	101940-101974	GG	AGG
-recovered pasa_asmbl_30149.p1, initial, 100515, 100700
-recovered pasa_asmbl_30149.p1, internal, 101146, 101228
-recovered pasa_asmbl_30149.p1, internal, 101650, 101786
Valid prediction for GeneMark_model.88279_t
Valid prediction for Augustus_model.g34161.t1
Valid prediction for GlimmerHMM_glimmerT_50926-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6479, rend_intergenic: 2554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24291, rend_intergenic: 22718  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28953, rend_intergenic: 24369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31218, rend_intergenic: 29180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66300, rend_intergenic: 31714  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80792, rend_intergenic: 74177  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99152, rend_intergenic: 90888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116507, rend_intergenic: 105098  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116644, rend_intergenic: 116551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120342, rend_intergenic: 116665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131171, rend_intergenic: 120460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135533, rend_intergenic: 132433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139721, rend_intergenic: 137278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152852, rend_intergenic: 144221  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175626, rend_intergenic: 170242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198396, rend_intergenic: 193250  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 199975
-exon list size: 828


building trellis

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35.1    
35.2    
35.3    
35.4    
35.5    
35.7    
35.8    
35.9    
36.0    
36.1    
36.3    
36.4    
36.5    
36.6    
36.7    
36.9    
37.0    
37.1    
37.2    
37.3    
37.5    
37.6    
37.7    
37.8    
38.0    
38.1    
38.2    
38.3    
38.4    
38.6    
38.7    
38.8    
38.9    
39.0    
39.2    
39.3    
39.4    
39.5    
39.6    
39.8    
39.9    
40.0    
40.1    
40.2    
40.4    
40.5    
40.6    
40.7    
40.8    
41.0    
41.1    
41.2    
41.3    
41.4    
41.6    
41.7    
41.8    
41.9    
42.0    
42.2    
42.3    
42.4    
42.5    
42.7    
42.8    
42.9    
43.0    
43.1    
43.3    
43.4    
43.5    
43.6    
43.7    
43.9    
44.0    
44.1    
44.2    
44.3    
44.5    
44.6    
44.7    
44.8    
44.9    
45.1    
45.2    
45.3    
45.4    
45.5    
45.7    
45.8    
45.9    
46.0    
46.1    
46.3    
46.4    
46.5    
46.6    
46.7    
46.9    
47.0    
47.1    
47.2    
47.3    
47.5    
47.6    
47.7    
47.8    
48.0    
48.1    
48.2    
48.3    
48.4    
48.6    
48.7    
48.8    
48.9    
49.0    
49.2    
49.3    
49.4    
49.5    
49.6    
49.8    
49.9    
50.0    
50.1    
50.2    
50.4    
50.5    
50.6    
50.7    
50.8    
51.0    
51.1    
51.2    
51.3    
51.4    
51.6    
51.7    
51.8    
51.9    
52.0    
52.2    
52.3    
52.4    
52.5    
52.7    
52.8    
52.9    
53.0    
53.1    
53.3    
53.4    
53.5    
53.6    
53.7    
53.9    
54.0    
54.1    
54.2    
54.3    
54.5    
54.6    
54.7    
54.8    
54.9    
55.1    
55.2    
55.3    
55.4    
55.5    
55.7    
55.8    
55.9    
56.0    
56.1    
56.3    
56.4    
56.5    
56.6    
56.7    
56.9    
57.0    
57.1    
57.2    
57.3    
57.5    
57.6    
57.7    
57.8    
58.0    
58.1    
58.2    
58.3    
58.4    
58.6    
58.7    
58.8    
58.9    
59.0    
59.2    
59.3    
59.4    
59.5    
59.6    
59.8    
59.9    
60.0    
60.1    
60.2    
60.4    
60.5    
60.6    
60.7    
60.8    
61.0    
61.1    
61.2    
61.3    
61.4    
61.6    
61.7    
61.8    
61.9    
62.0    
62.2    
62.3    
62.4    
62.5    
62.7    
62.8    
62.9    
63.0    
63.1    
63.3    
63.4    
63.5    
63.6    
63.7    
63.9    
64.0    
64.1    
64.2    
64.3    
64.5    
64.6    
64.7    
64.8    
64.9    
65.1    
65.2    
65.3    
65.4    
65.5    
65.7    
65.8    
65.9    
66.0    
66.1    
66.3    
66.4    
66.5    
66.6    
66.7    
66.9    
67.0    
67.1    
67.2    
67.3    
67.5    
67.6    
67.7    
67.8    
68.0    
68.1    
68.2    
68.3    
68.4    
68.6    
68.7    
68.8    
68.9    
69.0    
69.2    
69.3    
69.4    
69.5    
69.6    
69.8    
69.9    
70.0    
70.1    
70.2    
70.4    
70.5    
70.6    
70.7    
70.8    
71.0    
71.1    
71.2    
71.3    
71.4    
71.6    
71.7    
71.8    
71.9    
72.0    
72.2    
72.3    
72.4    
72.5    
72.7    
72.8    
72.9    
73.0    
73.1    
73.3    
73.4    
73.5    
73.6    
73.7    
73.9    
74.0    
74.1    
74.2    
74.3    
74.5    
74.6    
74.7    
74.8    
74.9    
75.1    
75.2    
75.3    
75.4    
75.5    
75.7    
75.8    
75.9    
76.0    
76.1    
76.3    
76.4    
76.5    
76.6    
76.7    
76.9    
77.0    
77.1    
77.2    
77.3    
77.5    
77.6    
77.7    
77.8    
78.0    
78.1    
78.2    
78.3    
78.4    
78.6    
78.7    
78.8    
78.9    
79.0    
79.2    
79.3    
79.4    
79.5    
79.6    
79.8    
79.9    
80.0    
80.1    
80.2    
80.4    
80.5    
80.6    
80.7    
80.8    
81.0    
81.1    
81.2    
81.3    
81.4    
81.6    
81.7    
81.8    
81.9    
82.0    
82.2    
82.3    
82.4    
82.5    
82.7    
82.8    
82.9    
83.0    
83.1    
83.3    
83.4    
83.5    
83.6    
83.7    
83.9    
84.0    
84.1    
84.2    
84.3    
84.5    
84.6    
84.7    
84.8    
84.9    
85.1    
85.2    
85.3    
85.4    
85.5    
85.7    
85.8    
85.9    
86.0    
86.1    
86.3    
86.4    
86.5    
86.6    
86.7    
86.9    
87.0    
87.1    
87.2    
87.3    
87.5    
87.6    
87.7    
87.8    
88.0    
88.1    
88.2    
88.3    
88.4    
88.6    
88.7    
88.8    
88.9    
89.0    
89.2    
89.3    
89.4    
89.5    
89.6    
89.8    
89.9    
90.0    
90.1    
90.2    
90.4    
90.5    
90.6    
90.7    
90.8    
91.0    
91.1    
91.2    
91.3    
91.4    
91.6    
91.7    
91.8    
91.9    
92.0    
92.2    
92.3    
92.4    
92.5    
92.7    
92.8    
92.9    
93.0    
93.1    
93.3    
93.4    
93.5    
93.6    
93.7    
93.9    
94.0    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.8    
94.9    
95.1    
95.2    
95.3    
95.4    
95.5    
95.7    
95.8    
95.9    
96.0    
96.1    
96.3    
96.4    
96.5    
96.6    
96.7    
96.9    
97.0    
97.1    
97.2    
97.3    
97.5    
97.6    
97.7    
97.8    
98.0    
98.1    
98.2    
98.3    
98.4    
98.6    
98.7    
98.8    
98.9    
99.0    
99.2    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 6479, rend_intergenic: 2554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24291, rend_intergenic: 22718  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28953, rend_intergenic: 24369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31218, rend_intergenic: 29180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66300, rend_intergenic: 31714  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80792, rend_intergenic: 74177  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99152, rend_intergenic: 90888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116507, rend_intergenic: 105098  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116644, rend_intergenic: 116551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120342, rend_intergenic: 116665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131171, rend_intergenic: 120460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135533, rend_intergenic: 132433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139721, rend_intergenic: 137278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152852, rend_intergenic: 144221  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175626, rend_intergenic: 170242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198396, rend_intergenic: 193250  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support