-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_6662013-6951715 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.88174_t Valid prediction for snap_scaffold_22-snap.1330-T1 Valid prediction for GeneMark_model.88173_t Valid prediction for GeneMark_model.88145_t Valid prediction for Augustus_model.g34108.t1 Valid prediction for GeneMark_model.88143_t Valid prediction for snap_scaffold_22-snap.1372-T1 Valid prediction for snap_scaffold_22-snap.1366-T1 Valid prediction for snap_scaffold_22-snap.1381-T1 Valid prediction for GlimmerHMM_glimmerT_50869-T1 Valid prediction for GlimmerHMM_glimmerT_50871-T1 Valid prediction for GeneMark_model.88099_t Valid prediction for GeneMark_model.88080_t Valid prediction for GeneMark_model.88120_t Valid prediction for Augustus_model.g34097.t1 Valid prediction for GlimmerHMM_glimmerT_50875-T1 Valid prediction for GlimmerHMM_glimmerT_50888-T1 Valid prediction for Augustus_model.g34092.t1 Valid prediction for GeneMark_model.88083_t Valid prediction for Augustus_model.g34093.t1 Valid prediction for GeneMark_model.88112_t Couldn't classify 287679, 288183 Couldn't classify 289169, 289203 Sorry, prediction pasa_asmbl_29434.p1 fails validation. (CCG) CG 287679-288183 GT TGG (GGA) AG 289169-289203 GC GAG -recovered pasa_asmbl_29434.p1, internal, 289169, 289203 Valid prediction for GeneMark_model.88124_t Valid prediction for GeneMark_model.88117_t Valid prediction for GlimmerHMM_glimmerT_50863-T1 Valid prediction for GeneMark_model.88156_t Valid prediction for GlimmerHMM_glimmerT_50873-T1 Valid prediction for snap_scaffold_22-snap.1383-T1 Couldn't classify 175429, 176118 Sorry, prediction pasa_asmbl_29415.p1 fails validation. (GAT) TG 175429-176118 AC ACA Valid prediction for Augustus_model.g34117.t1 Valid prediction for snap_scaffold_22-snap.1345-T1 Valid prediction for Augustus_model.g34101.t1 Couldn't classify 273268, 273416 Sorry, prediction pasa_asmbl_29428.p1 fails validation. (GCA) AG 273268-273416 GT CAG (GGC) AG 273610-273732 GT AGG (CAT) AG 274042-274349 GT GGG (GTA) AG 274626-274787 GT CGG (GGA) AG 275200-275339 GT AGG (GAT) AG 275446-275584 GT GGG (GTG) AG 275712-275862 GT AAG (GTA) AG 276080-276195 GT ATG (CCT) AG 276394-276710 GC AGG -recovered pasa_asmbl_29428.p1, terminal, 276394, 276710 -recovered pasa_asmbl_29428.p1, internal, 273268, 273416 -recovered pasa_asmbl_29428.p1, internal, 273610, 273732 -recovered pasa_asmbl_29428.p1, internal, 274042, 274349 -recovered pasa_asmbl_29428.p1, internal, 274626, 274787 -recovered pasa_asmbl_29428.p1, internal, 275200, 275339 -recovered pasa_asmbl_29428.p1, internal, 275446, 275584 -recovered pasa_asmbl_29428.p1, internal, 275712, 275862 -recovered pasa_asmbl_29428.p1, internal, 276080, 276195 -recovered pasa_asmbl_29428.p1, internal, 276394, 276710 Couldn't classify 211832, 211915 Sorry, prediction pasa_asmbl_29424.p1 fails validation. (CTA) TT 211832-211915 GT AGG (GAC) AG 212708-212840 GT AGG (AGT) AG 213016-213227 GT AGG (AGT) AG 213402-213552 GT GTG (ACA) AG 213763-213854 GT CTG (GAG) AG 213968-214024 GT CGG (CTG) AG 214203-214349 GT AGG (GGC) AG 214588-214802 GT TTG (TAC) AG 215164-215308 GT AGG (TCT) AG 215567-215686 CA GAC -recovered pasa_asmbl_29424.p1, terminal, 215567, 215686 -recovered pasa_asmbl_29424.p1, internal, 212708, 212840 -recovered pasa_asmbl_29424.p1, internal, 213016, 213227 -recovered pasa_asmbl_29424.p1, internal, 213402, 213552 -recovered pasa_asmbl_29424.p1, internal, 213763, 213854 -recovered pasa_asmbl_29424.p1, internal, 213968, 214024 -recovered pasa_asmbl_29424.p1, internal, 214203, 214349 -recovered pasa_asmbl_29424.p1, internal, 214588, 214802 -recovered pasa_asmbl_29424.p1, internal, 215164, 215308 Valid prediction for snap_scaffold_22-snap.1358-T1 Valid prediction for GeneMark_model.88085_t Valid prediction for Augustus_model.g34100.t1 Valid prediction for GeneMark_model.88126_t Valid prediction for GeneMark_model.88092_t Valid prediction for GlimmerHMM_glimmerT_50900-T1 Valid prediction for GeneMark_model.88135_t Valid prediction for GlimmerHMM_glimmerT_50887-T1 Valid prediction for GlimmerHMM_glimmerT_50876-T1 Valid prediction for GlimmerHMM_glimmerT_50859-T1 Valid prediction for Augustus_model.g34114.t1 Valid prediction for GeneMark_model.88133_t Valid prediction for GlimmerHMM_glimmerT_50881-T1 Valid prediction for snap_scaffold_22-snap.1386-T1 Valid prediction for GlimmerHMM_glimmerT_50895-T1 Valid prediction for snap_scaffold_22-snap.1356-T1 Valid prediction for GeneMark_model.88140_t Valid prediction for snap_scaffold_22-snap.1327-T1 Valid prediction for GlimmerHMM_glimmerT_50879-T1 Valid prediction for GlimmerHMM_glimmerT_50866-T1 Valid prediction for GeneMark_model.88082_t Valid prediction for snap_scaffold_22-snap.1349-T1 Couldn't classify 176539, 178043 Couldn't classify 180693, 180799 Sorry, prediction pasa_asmbl_29416.p1 fails validation. (CCG) CC 176539-178043 GT AAG (GGG) AG 178210-178333 GT ACG (CTG) AG 178561-178666 GT CAG (ACC) AG 178815-179133 GT AGG (CGC) AG 179229-179297 GT AGG (GTG) AG 179520-179668 GT TGG (GTC) AG 179902-180016 GT AAG (ACA) AG 180229-180416 GT CTG (CCT) AG 180693-180799 NN NNN -recovered pasa_asmbl_29416.p1, internal, 178210, 178333 -recovered pasa_asmbl_29416.p1, internal, 178561, 178666 -recovered pasa_asmbl_29416.p1, internal, 178815, 179133 -recovered pasa_asmbl_29416.p1, internal, 179229, 179297 -recovered pasa_asmbl_29416.p1, internal, 179520, 179668 -recovered pasa_asmbl_29416.p1, internal, 179902, 180016 -recovered pasa_asmbl_29416.p1, internal, 180229, 180416 Valid prediction for GeneMark_model.88106_t Valid prediction for GlimmerHMM_glimmerT_50898-T1 Valid prediction for GeneMark_model.88104_t Valid prediction for GeneMark_model.88149_t Valid prediction for snap_scaffold_22-snap.1370-T1 Valid prediction for GeneMark_model.88097_t Valid prediction for GeneMark_model.88137_t Couldn't classify 287190, 287531 Sorry, prediction pasa_asmbl_29432.p1 fails validation. (CGC) GG 287190-287531 GT TGG Valid prediction for GeneMark_model.88176_t Valid prediction for Augustus_model.g34120.t1 Valid prediction for Augustus_model.g34094.t1 Valid prediction for snap_scaffold_22-snap.1376-T1 Valid prediction for snap_scaffold_22-snap.1352-T1 Valid prediction for GeneMark_model.88122_t Valid prediction for snap_scaffold_22-snap.1377-T1 Valid prediction for GlimmerHMM_glimmerT_50860-T1 Valid prediction for GeneMark_model.88171_t Couldn't classify 286644, 286985 Sorry, prediction pasa_asmbl_29429.p1 fails validation. (ATG) CC 286644-286985 CC ACC Valid prediction for GeneMark_model.88169_t Valid prediction for GeneMark_model.88074_t Valid prediction for GeneMark_model.88108_t Valid prediction for GeneMark_model.88162_t Valid prediction for Augustus_model.g34109.t1 Valid prediction for Augustus_model.g34113.t1 Valid prediction for GeneMark_model.88151_t Valid prediction for GeneMark_model.88166_t Valid prediction for snap_scaffold_22-snap.1328-T1 Valid prediction for GlimmerHMM_glimmerT_50864-T1 Valid prediction for GlimmerHMM_glimmerT_50883-T1 Valid prediction for snap_scaffold_22-snap.1364-T1 Valid prediction for GlimmerHMM_glimmerT_50868-T1 Valid prediction for GlimmerHMM_glimmerT_50865-T1 Valid prediction for snap_scaffold_22-snap.1363-T1 Valid prediction for GlimmerHMM_glimmerT_50861-T1 Valid prediction for snap_scaffold_22-snap.1341-T1 Valid prediction for HiQ_model.g34111.t1 Valid prediction for GlimmerHMM_glimmerT_50882-T1 Valid prediction for Augustus_model.g34103.t1 Valid prediction for GeneMark_model.88077_t Valid prediction for GeneMark_model.88130_t Valid prediction for GeneMark_model.88094_t Valid prediction for GlimmerHMM_glimmerT_50890-T1 Valid prediction for GlimmerHMM_glimmerT_50874-T1 Valid prediction for GeneMark_model.88114_t Valid prediction for snap_scaffold_22-snap.1353-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for GeneMark_model.88158_t Valid prediction for GlimmerHMM_glimmerT_50894-T1 Valid prediction for Augustus_model.g34096.t1 Valid prediction for snap_scaffold_22-snap.1326-T1 Valid prediction for GlimmerHMM_glimmerT_50870-T1 Valid prediction for GeneMark_model.88154_t Valid prediction for Augustus_model.g34098.t1 Valid prediction for Augustus_model.g34106.t1 Valid prediction for Augustus_model.g34099.t1 Valid prediction for GlimmerHMM_glimmerT_50867-T1 Valid prediction for GlimmerHMM_glimmerT_50885-T1 Valid prediction for snap_scaffold_22-snap.1374-T1 Valid prediction for Augustus_model.g34095.t1 Valid prediction for snap_scaffold_22-snap.1368-T1 Valid prediction for GeneMark_model.88150_t Valid prediction for snap_scaffold_22-snap.1333-T1 Valid prediction for GlimmerHMM_glimmerT_50901-T1 Valid prediction for GeneMark_model.88153_t Valid prediction for GeneMark_model.88090_t Valid prediction for GeneMark_model.88164_t Valid prediction for GeneMark_model.88147_t Valid prediction for GlimmerHMM_glimmerT_50899-T1 Valid prediction for GeneMark_model.88087_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.88172_t Valid prediction for GeneMark_model.88078_t Valid prediction for GlimmerHMM_glimmerT_50891-T1 Valid prediction for snap_scaffold_22-snap.1340-T1 Valid prediction for GeneMark_model.88144_t Valid prediction for snap_scaffold_22-snap.1360-T1 Valid prediction for snap_scaffold_22-snap.1369-T1 Valid prediction for snap_scaffold_22-snap.1375-T1 Valid prediction for snap_scaffold_22-snap.1382-T1 Valid prediction for snap_scaffold_22-snap.1346-T1 Valid prediction for snap_scaffold_22-snap.1329-T1 Valid prediction for snap_scaffold_22-snap.1339-T1 Valid prediction for GeneMark_model.88155_t Valid prediction for GeneMark_model.88089_t Valid prediction for HiQ_model.g34110.t1 Valid prediction for GlimmerHMM_glimmerT_50884-T1 Valid prediction for Augustus_model.g34116.t1 Valid prediction for GeneMark_model.88098_t Valid prediction for GlimmerHMM_glimmerT_50889-T1 Valid prediction for GeneMark_model.88127_t Valid prediction for GlimmerHMM_glimmerT_50893-T1 Valid prediction for snap_scaffold_22-snap.1342-T1 Valid prediction for Augustus_model.g34102.t1 Valid prediction for snap_scaffold_22-snap.1357-T1 Valid prediction for snap_scaffold_22-snap.1337-T1 Valid prediction for GeneMark_model.88096_t Valid prediction for GeneMark_model.88111_t Valid prediction for snap_scaffold_22-snap.1350-T1 Valid prediction for snap_scaffold_22-snap.1380-T1 Valid prediction for Augustus_model.g34118.t1 Valid prediction for snap_scaffold_22-snap.1325-T1 Valid prediction for GeneMark_model.88079_t Valid prediction for GeneMark_model.88107_t Valid prediction for GeneMark_model.88075_t Valid prediction for GeneMark_model.88084_t Valid prediction for GeneMark_model.88141_t Valid prediction for GlimmerHMM_glimmerT_50878-T1 Valid prediction for snap_scaffold_22-snap.1385-T1 Valid prediction for snap_scaffold_22-snap.1359-T1 Valid prediction for GeneMark_model.88115_t Valid prediction for GeneMark_model.88167_t Valid prediction for snap_scaffold_22-snap.1367-T1 Valid prediction for GeneMark_model.88159_t Valid prediction for snap_scaffold_22-snap.1335-T1 Valid prediction for snap_scaffold_22-snap.1331-T1 Sorry, intron length (5) is less than minimum required (10) Valid prediction for GeneMark_model.88152_t Valid prediction for GeneMark_model.88102_t Valid prediction for GeneMark_model.88134_t Valid prediction for GeneMark_model.88132_t Valid prediction for snap_scaffold_22-snap.1348-T1 Valid prediction for GlimmerHMM_glimmerT_50897-T1 Valid prediction for GlimmerHMM_glimmerT_50872-T1 Valid prediction for GlimmerHMM_glimmerT_50886-T1 Valid prediction for GeneMark_model.88146_t Couldn't classify 50532, 50678 Sorry, prediction pasa_asmbl_30109.p1 fails validation. (TTT) TC 50532-50678 GT AGG (TTG) AG 50805-50909 GT CGG (GCG) AG 51508-51670 GT AGG (GCT) AG 51816-51896 GT AGG (GCC) AG 52031-52167 AG AAA -recovered pasa_asmbl_30109.p1, terminal, 52031, 52167 -recovered pasa_asmbl_30109.p1, internal, 50805, 50909 -recovered pasa_asmbl_30109.p1, internal, 51508, 51670 -recovered pasa_asmbl_30109.p1, internal, 51816, 51896 Valid prediction for GeneMark_model.88103_t Valid prediction for GeneMark_model.88113_t Valid prediction for GeneMark_model.88128_t Valid prediction for GeneMark_model.88163_t Valid prediction for GeneMark_model.88142_t Couldn't classify 79549, 79647 Sorry, prediction pasa_asmbl_30106.p1 fails validation. (AAG) AT 79549-79647 GT AGG (GTG) AG 79825-80000 GT AGG (GCG) AG 80556-80769 GT AGG (TGG) AG 81214-81401 GT AGG (GGC) AG 81590-81628 GT GGG (CTA) AG 81829-81937 GT TAG (GTT) AG 82135-82200 GT AAG (GTG) AG 82353-82465 GT TGG (GGT) AG 82601-82712 AC AGA -recovered pasa_asmbl_30106.p1, terminal, 82601, 82712 -recovered pasa_asmbl_30106.p1, internal, 79825, 80000 -recovered pasa_asmbl_30106.p1, internal, 80556, 80769 -recovered pasa_asmbl_30106.p1, internal, 81214, 81401 -recovered pasa_asmbl_30106.p1, internal, 81590, 81628 -recovered pasa_asmbl_30106.p1, internal, 81829, 81937 -recovered pasa_asmbl_30106.p1, internal, 82135, 82200 -recovered pasa_asmbl_30106.p1, internal, 82353, 82465 Valid prediction for snap_scaffold_22-snap.1362-T1 Valid prediction for snap_scaffold_22-snap.1351-T1 Valid prediction for GeneMark_model.88119_t Valid prediction for snap_scaffold_22-snap.1336-T1 Couldn't classify 48320, 48433 Couldn't classify 50278, 50363 Sorry, prediction pasa_asmbl_30110.p1 fails validation. (AAC) TC 48320-48433 GT AGG (AGG) AG 48906-49034 GT AGG (ACT) AG 49192-49474 GT AGG (GCA) AG 49660-49803 GT GTG (TTG) AG 50278-50363 GT AGG add_exon() Sorry, pasa_asmbl_30110.p1 49192-49474-terminal-3 is invalid. -recovered pasa_asmbl_30110.p1, terminal, 49192, 49474 -recovered pasa_asmbl_30110.p1, internal, 48906, 49034 -recovered pasa_asmbl_30110.p1, internal, 49192, 49474 -recovered pasa_asmbl_30110.p1, internal, 49660, 49803 -recovered pasa_asmbl_30110.p1, internal, 50278, 50363 Valid prediction for pasa_asmbl_30113.p1 Valid prediction for GlimmerHMM_glimmerT_50896-T1 Valid prediction for snap_scaffold_22-snap.1344-T1 Valid prediction for GeneMark_model.88165_t Valid prediction for GeneMark_model.88091_t Valid prediction for snap_scaffold_22-snap.1332-T1 Valid prediction for snap_scaffold_22-snap.1384-T1 Valid prediction for snap_scaffold_22-snap.1338-T1 Valid prediction for GeneMark_model.88100_t Valid prediction for GeneMark_model.88088_t Valid prediction for snap_scaffold_22-snap.1355-T1 Valid prediction for snap_scaffold_22-snap.1373-T1 Valid prediction for GeneMark_model.88129_t Valid prediction for GeneMark_model.88118_t Valid prediction for GeneMark_model.88109_t Valid prediction for snap_scaffold_22-snap.1361-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for GeneMark_model.88093_t Valid prediction for GeneMark_model.88086_t Valid prediction for GeneMark_model.88157_t Valid prediction for HiQ_model.g34121.t1 Valid prediction for GlimmerHMM_glimmerT_50862-T1 Valid prediction for GlimmerHMM_glimmerT_50880-T1 Valid prediction for snap_scaffold_22-snap.1343-T1 Valid prediction for Augustus_model.g34107.t1 Valid prediction for Augustus_model.g34115.t1 Valid prediction for HiQ_model.g34119.t1 Valid prediction for snap_scaffold_22-snap.1379-T1 Valid prediction for GeneMark_model.88138_t Valid prediction for GeneMark_model.88081_t Valid prediction for Augustus_model.g34104.t1 Valid prediction for GeneMark_model.88161_t Valid prediction for GeneMark_model.88095_t Valid prediction for GeneMark_model.88101_t Couldn't classify 78410, 78524 Couldn't classify 79186, 79290 Sorry, prediction pasa_asmbl_30107.p1 fails validation. (GTC) CA 78410-78524 GT AGG (AGG) AG 78814-79004 GT CGG (TCA) AG 79186-79290 AC CCA -recovered pasa_asmbl_30107.p1, internal, 78814, 79004 Valid prediction for snap_scaffold_22-snap.1371-T1 Valid prediction for GeneMark_model.88175_t Valid prediction for GeneMark_model.88076_t Valid prediction for CodingQuarry_transcript_34133-T1 Valid prediction for snap_scaffold_22-snap.1365-T1 Valid prediction for GlimmerHMM_glimmerT_50892-T1 Valid prediction for GeneMark_model.88131_t Valid prediction for snap_scaffold_22-snap.1378-T1 Valid prediction for GeneMark_model.88139_t Valid prediction for CodingQuarry_transcript_34134-T1 Valid prediction for GeneMark_model.88116_t Valid prediction for GlimmerHMM_glimmerT_50877-T1 Valid prediction for GeneMark_model.88110_t Valid prediction for Augustus_model.g34112.t1 Valid prediction for snap_scaffold_22-snap.1354-T1 Valid prediction for Augustus_model.g34105.t1 Valid prediction for GeneMark_model.88121_t Valid prediction for GeneMark_model.88123_t Valid prediction for GeneMark_model.88136_t Valid prediction for snap_scaffold_22-snap.1334-T1 Valid prediction for GeneMark_model.88125_t Valid prediction for GeneMark_model.88105_t Valid prediction for GeneMark_model.88170_t Valid prediction for snap_scaffold_22-snap.1347-T1 Sorry, intron length (3) is less than minimum required (10) -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8187, rend_intergenic: 5277 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 17644, rend_intergenic: 14708 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23627, rend_intergenic: 18105 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 37282, rend_intergenic: 23705 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40718, rend_intergenic: 37298 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 81585, rend_intergenic: 41024 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 88036, rend_intergenic: 84736 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97463, rend_intergenic: 88373 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110089, rend_intergenic: 97570 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 111131, rend_intergenic: 110089 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113604, rend_intergenic: 111324 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 123163, rend_intergenic: 117728 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 145271, rend_intergenic: 124066 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162714, rend_intergenic: 145463 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 178047, rend_intergenic: 165121 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 180390, rend_intergenic: 178196 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 197612, rend_intergenic: 195601 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 225008, rend_intergenic: 221694 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 234442, rend_intergenic: 228999 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 258919, rend_intergenic: 255245 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 274707, rend_intergenic: 271093 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 289703 -exon list size: 1365 building trellis 0.1 0.1 0.2 0.3 0.4 0.4 0.5 0.6 0.7 0.7 0.8 0.9 1.0 1.0 1.1 1.2 1.2 1.3 1.4 1.5 1.5 1.6 1.7 1.8 1.8 1.9 2.0 2.0 2.1 2.2 2.3 2.3 2.4 2.5 2.6 2.6 2.7 2.8 2.9 2.9 3.0 3.1 3.1 3.2 3.3 3.4 3.4 3.5 3.6 3.7 3.7 3.8 3.9 4.0 4.0 4.1 4.2 4.2 4.3 4.4 4.5 4.5 4.6 4.7 4.8 4.8 4.9 5.0 5.0 5.1 5.2 5.3 5.3 5.4 5.5 5.6 5.6 5.7 5.8 5.9 5.9 6.0 6.1 6.1 6.2 6.3 6.4 6.4 6.5 6.6 6.7 6.7 6.8 6.9 6.9 7.0 7.1 7.2 7.2 7.3 7.4 7.5 7.5 7.6 7.7 7.8 7.8 7.9 8.0 8.0 8.1 8.2 8.3 8.3 8.4 8.5 8.6 8.6 8.7 8.8 8.9 8.9 9.0 9.1 9.1 9.2 9.3 9.4 9.4 9.5 9.6 9.7 9.7 9.8 9.9 9.9 10.0 10.1 10.2 10.2 10.3 10.4 10.5 10.5 10.6 10.7 10.8 10.8 10.9 11.0 11.0 11.1 11.2 11.3 11.3 11.4 11.5 11.6 11.6 11.7 11.8 11.9 11.9 12.0 12.1 12.1 12.2 12.3 12.4 12.4 12.5 12.6 12.7 12.7 12.8 12.9 12.9 13.0 13.1 13.2 13.2 13.3 13.4 13.5 13.5 13.6 13.7 13.8 13.8 13.9 14.0 14.0 14.1 14.2 14.3 14.3 14.4 14.5 14.6 14.6 14.7 14.8 14.9 14.9 15.0 15.1 15.1 15.2 15.3 15.4 15.4 15.5 15.6 15.7 15.7 15.8 15.9 15.9 16.0 16.1 16.2 16.2 16.3 16.4 16.5 16.5 16.6 16.7 16.8 16.8 16.9 17.0 17.0 17.1 17.2 17.3 17.3 17.4 17.5 17.6 17.6 17.7 17.8 17.8 17.9 18.0 18.1 18.1 18.2 18.3 18.4 18.4 18.5 18.6 18.7 18.7 18.8 18.9 18.9 19.0 19.1 19.2 19.2 19.3 19.4 19.5 19.5 19.6 19.7 19.8 19.8 19.9 20.0 20.0 20.1 20.2 20.3 20.3 20.4 20.5 20.6 20.6 20.7 20.8 20.8 20.9 21.0 21.1 21.1 21.2 21.3 21.4 21.4 21.5 21.6 21.7 21.7 21.8 21.9 21.9 22.0 22.1 22.2 22.2 22.3 22.4 22.5 22.5 22.6 22.7 22.8 22.8 22.9 23.0 23.0 23.1 23.2 23.3 23.3 23.4 23.5 23.6 23.6 23.7 23.8 23.8 23.9 24.0 24.1 24.1 24.2 24.3 24.4 24.4 24.5 24.6 24.7 24.7 24.8 24.9 24.9 25.0 25.1 25.2 25.2 25.3 25.4 25.5 25.5 25.6 25.7 25.7 25.8 25.9 26.0 26.0 26.1 26.2 26.3 26.3 26.4 26.5 26.6 26.6 26.7 26.8 26.8 26.9 27.0 27.1 27.1 27.2 27.3 27.4 27.4 27.5 27.6 27.7 27.7 27.8 27.9 27.9 28.0 28.1 28.2 28.2 28.3 28.4 28.5 28.5 28.6 28.7 28.7 28.8 28.9 29.0 29.0 29.1 29.2 29.3 29.3 29.4 29.5 29.6 29.6 29.7 29.8 29.8 29.9 30.0 30.1 30.1 30.2 30.3 30.4 30.4 30.5 30.6 30.7 30.7 30.8 30.9 30.9 31.0 31.1 31.2 31.2 31.3 31.4 31.5 31.5 31.6 31.7 31.7 31.8 31.9 32.0 32.0 32.1 32.2 32.3 32.3 32.4 32.5 32.6 32.6 32.7 32.8 32.8 32.9 33.0 33.1 33.1 33.2 33.3 33.4 33.4 33.5 33.6 33.7 33.7 33.8 33.9 33.9 34.0 34.1 34.2 34.2 34.3 34.4 34.5 34.5 34.6 34.7 34.7 34.8 34.9 35.0 35.0 35.1 35.2 35.3 35.3 35.4 35.5 35.6 35.6 35.7 35.8 35.8 35.9 36.0 36.1 36.1 36.2 36.3 36.4 36.4 36.5 36.6 36.6 36.7 36.8 36.9 36.9 37.0 37.1 37.2 37.2 37.3 37.4 37.5 37.5 37.6 37.7 37.7 37.8 37.9 38.0 38.0 38.1 38.2 38.3 38.3 38.4 38.5 38.6 38.6 38.7 38.8 38.8 38.9 39.0 39.1 39.1 39.2 39.3 39.4 39.4 39.5 39.6 39.6 39.7 39.8 39.9 39.9 40.0 40.1 40.2 40.2 40.3 40.4 40.5 40.5 40.6 40.7 40.7 40.8 40.9 41.0 41.0 41.1 41.2 41.3 41.3 41.4 41.5 41.6 41.6 41.7 41.8 41.8 41.9 42.0 42.1 42.1 42.2 42.3 42.4 42.4 42.5 42.6 42.6 42.7 42.8 42.9 42.9 43.0 43.1 43.2 43.2 43.3 43.4 43.5 43.5 43.6 43.7 43.7 43.8 43.9 44.0 44.0 44.1 44.2 44.3 44.3 44.4 44.5 44.6 44.6 44.7 44.8 44.8 44.9 45.0 45.1 45.1 45.2 45.3 45.4 45.4 45.5 45.6 45.6 45.7 45.8 45.9 45.9 46.0 46.1 46.2 46.2 46.3 46.4 46.5 46.5 46.6 46.7 46.7 46.8 46.9 47.0 47.0 47.1 47.2 47.3 47.3 47.4 47.5 47.5 47.6 47.7 47.8 47.8 47.9 48.0 48.1 48.1 48.2 48.3 48.4 48.4 48.5 48.6 48.6 48.7 48.8 48.9 48.9 49.0 49.1 49.2 49.2 49.3 49.4 49.5 49.5 49.6 49.7 49.7 49.8 49.9 50.0 50.0 50.1 50.2 50.3 50.3 50.4 50.5 50.5 50.6 50.7 50.8 50.8 50.9 51.0 51.1 51.1 51.2 51.3 51.4 51.4 51.5 51.6 51.6 51.7 51.8 51.9 51.9 52.0 52.1 52.2 52.2 52.3 52.4 52.5 52.5 52.6 52.7 52.7 52.8 52.9 53.0 53.0 53.1 53.2 53.3 53.3 53.4 53.5 53.5 53.6 53.7 53.8 53.8 53.9 54.0 54.1 54.1 54.2 54.3 54.4 54.4 54.5 54.6 54.6 54.7 54.8 54.9 54.9 55.0 55.1 55.2 55.2 55.3 55.4 55.4 55.5 55.6 55.7 55.7 55.8 55.9 56.0 56.0 56.1 56.2 56.3 56.3 56.4 56.5 56.5 56.6 56.7 56.8 56.8 56.9 57.0 57.1 57.1 57.2 57.3 57.4 57.4 57.5 57.6 57.6 57.7 57.8 57.9 57.9 58.0 58.1 58.2 58.2 58.3 58.4 58.4 58.5 58.6 58.7 58.7 58.8 58.9 59.0 59.0 59.1 59.2 59.3 59.3 59.4 59.5 59.5 59.6 59.7 59.8 59.8 59.9 60.0 60.1 60.1 60.2 60.3 60.4 60.4 60.5 60.6 60.6 60.7 60.8 60.9 60.9 61.0 61.1 61.2 61.2 61.3 61.4 61.4 61.5 61.6 61.7 61.7 61.8 61.9 62.0 62.0 62.1 62.2 62.3 62.3 62.4 62.5 62.5 62.6 62.7 62.8 62.8 62.9 63.0 63.1 63.1 63.2 63.3 63.4 63.4 63.5 63.6 63.6 63.7 63.8 63.9 63.9 64.0 64.1 64.2 64.2 64.3 64.4 64.4 64.5 64.6 64.7 64.7 64.8 64.9 65.0 65.0 65.1 65.2 65.3 65.3 65.4 65.5 65.5 65.6 65.7 65.8 65.8 65.9 66.0 66.1 66.1 66.2 66.3 66.3 66.4 66.5 66.6 66.6 66.7 66.8 66.9 66.9 67.0 67.1 67.2 67.2 67.3 67.4 67.4 67.5 67.6 67.7 67.7 67.8 67.9 68.0 68.0 68.1 68.2 68.3 68.3 68.4 68.5 68.5 68.6 68.7 68.8 68.8 68.9 69.0 69.1 69.1 69.2 69.3 69.3 69.4 69.5 69.6 69.6 69.7 69.8 69.9 69.9 70.0 70.1 70.2 70.2 70.3 70.4 70.4 70.5 70.6 70.7 70.7 70.8 70.9 71.0 71.0 71.1 71.2 71.3 71.3 71.4 71.5 71.5 71.6 71.7 71.8 71.8 71.9 72.0 72.1 72.1 72.2 72.3 72.3 72.4 72.5 72.6 72.6 72.7 72.8 72.9 72.9 73.0 73.1 73.2 73.2 73.3 73.4 73.4 73.5 73.6 73.7 73.7 73.8 73.9 74.0 74.0 74.1 74.2 74.3 74.3 74.4 74.5 74.5 74.6 74.7 74.8 74.8 74.9 75.0 75.1 75.1 75.2 75.3 75.3 75.4 75.5 75.6 75.6 75.7 75.8 75.9 75.9 76.0 76.1 76.2 76.2 76.3 76.4 76.4 76.5 76.6 76.7 76.7 76.8 76.9 77.0 77.0 77.1 77.2 77.2 77.3 77.4 77.5 77.5 77.6 77.7 77.8 77.8 77.9 78.0 78.1 78.1 78.2 78.3 78.3 78.4 78.5 78.6 78.6 78.7 78.8 78.9 78.9 79.0 79.1 79.2 79.2 79.3 79.4 79.4 79.5 79.6 79.7 79.7 79.8 79.9 80.0 80.0 80.1 80.2 80.2 80.3 80.4 80.5 80.5 80.6 80.7 80.8 80.8 80.9 81.0 81.1 81.1 81.2 81.3 81.3 81.4 81.5 81.6 81.6 81.7 81.8 81.9 81.9 82.0 82.1 82.2 82.2 82.3 82.4 82.4 82.5 82.6 82.7 82.7 82.8 82.9 83.0 83.0 83.1 83.2 83.2 83.3 83.4 83.5 83.5 83.6 83.7 83.8 83.8 83.9 84.0 84.1 84.1 84.2 84.3 84.3 84.4 84.5 84.6 84.6 84.7 84.8 84.9 84.9 85.0 85.1 85.1 85.2 85.3 85.4 85.4 85.5 85.6 85.7 85.7 85.8 85.9 86.0 86.0 86.1 86.2 86.2 86.3 86.4 86.5 86.5 86.6 86.7 86.8 86.8 86.9 87.0 87.1 87.1 87.2 87.3 87.3 87.4 87.5 87.6 87.6 87.7 87.8 87.9 87.9 88.0 88.1 88.1 88.2 88.3 88.4 88.4 88.5 88.6 88.7 88.7 88.8 88.9 89.0 89.0 89.1 89.2 89.2 89.3 89.4 89.5 89.5 89.6 89.7 89.8 89.8 89.9 90.0 90.1 90.1 90.2 90.3 90.3 90.4 90.5 90.6 90.6 90.7 90.8 90.9 90.9 91.0 91.1 91.1 91.2 91.3 91.4 91.4 91.5 91.6 91.7 91.7 91.8 91.9 92.0 92.0 92.1 92.2 92.2 92.3 92.4 92.5 92.5 92.6 92.7 92.8 92.8 92.9 93.0 93.1 93.1 93.2 93.3 93.3 93.4 93.5 93.6 93.6 93.7 93.8 93.9 93.9 94.0 94.1 94.1 94.2 94.3 94.4 94.4 94.5 94.6 94.7 94.7 94.8 94.9 95.0 95.0 95.1 95.2 95.2 95.3 95.4 95.5 95.5 95.6 95.7 95.8 95.8 95.9 96.0 96.0 96.1 96.2 96.3 96.3 96.4 96.5 96.6 96.6 96.7 96.8 96.9 96.9 97.0 97.1 97.1 97.2 97.3 97.4 97.4 97.5 97.6 97.7 97.7 97.8 97.9 98.0 98.0 98.1 98.2 98.2 98.3 98.4 98.5 98.5 98.6 98.7 98.8 98.8 98.9 99.0 99.0 99.1 99.2 99.3 99.3 99.4 99.5 99.6 99.6 99.7 99.8 99.9 99.9 -found 54 predictions from path traversal Error with prediction: snap lend_intergenic: 8187, rend_intergenic: 5277 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 17644, rend_intergenic: 14708 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23627, rend_intergenic: 18105 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 37282, rend_intergenic: 23705 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40718, rend_intergenic: 37298 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 81585, rend_intergenic: 41024 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 88036, rend_intergenic: 84736 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97463, rend_intergenic: 88373 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110089, rend_intergenic: 97570 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 111131, rend_intergenic: 110089 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113604, rend_intergenic: 111324 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 123163, rend_intergenic: 117728 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 145271, rend_intergenic: 124066 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162714, rend_intergenic: 145463 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 178047, rend_intergenic: 165121 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 180390, rend_intergenic: 178196 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 197612, rend_intergenic: 195601 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 225008, rend_intergenic: 221694 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 234442, rend_intergenic: 228999 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 258919, rend_intergenic: 255245 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 274707, rend_intergenic: 271093 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 33 predictions persist after filtering for low support