-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_6535254-6667263

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.88020_t
Valid prediction for snap_scaffold_22-snap.1309-T1
Valid prediction for GeneMark_model.88026_t
Valid prediction for snap_scaffold_22-snap.1303-T1
Valid prediction for snap_scaffold_22-snap.1304-T1
Valid prediction for snap_scaffold_22-snap.1319-T1
Valid prediction for GeneMark_model.88016_t
Valid prediction for GeneMark_model.88050_t
Valid prediction for GlimmerHMM_glimmerT_50849-T1
Valid prediction for snap_scaffold_22-snap.1305-T1
Valid prediction for GlimmerHMM_glimmerT_50845-T1
Valid prediction for GeneMark_model.88038_t
Valid prediction for snap_scaffold_22-snap.1323-T1
Valid prediction for GeneMark_model.88028_t
Valid prediction for GeneMark_model.88064_t
Valid prediction for GlimmerHMM_glimmerT_50851-T1
Valid prediction for snap_scaffold_22-snap.1296-T1
Valid prediction for snap_scaffold_22-snap.1313-T1
Valid prediction for GeneMark_model.88072_t
Valid prediction for GeneMark_model.88036_t
Valid prediction for GeneMark_model.88065_t
Valid prediction for Augustus_model.g34088.t1
Valid prediction for GeneMark_model.88067_t
Valid prediction for GeneMark_model.88070_t
Valid prediction for snap_scaffold_22-snap.1301-T1
Valid prediction for Augustus_model.g34085.t1
Valid prediction for snap_scaffold_22-snap.1307-T1
Valid prediction for GeneMark_model.88017_t
Valid prediction for GeneMark_model.88045_t
Valid prediction for Augustus_model.g34086.t1
Valid prediction for Augustus_model.g34089.t1
Valid prediction for GeneMark_model.88062_t
Valid prediction for GeneMark_model.88041_t
Valid prediction for snap_scaffold_22-snap.1299-T1
Valid prediction for Augustus_model.g34091.t1
Valid prediction for GeneMark_model.88014_t
Valid prediction for snap_scaffold_22-snap.1324-T1
Valid prediction for GeneMark_model.88060_t
Valid prediction for GeneMark_model.88030_t
Valid prediction for GeneMark_model.88054_t
Valid prediction for snap_scaffold_22-snap.1294-T1
Valid prediction for GeneMark_model.88043_t
Valid prediction for GeneMark_model.88039_t
Valid prediction for GlimmerHMM_glimmerT_50858-T1
Valid prediction for GeneMark_model.88052_t
Valid prediction for GlimmerHMM_glimmerT_50848-T1
Valid prediction for GlimmerHMM_glimmerT_50853-T1
Valid prediction for GeneMark_model.88071_t
Valid prediction for GeneMark_model.88058_t
Valid prediction for GeneMark_model.88056_t
Valid prediction for GeneMark_model.88033_t
Valid prediction for GlimmerHMM_glimmerT_50847-T1
Valid prediction for GeneMark_model.88073_t
Valid prediction for GlimmerHMM_glimmerT_50855-T1
Valid prediction for GeneMark_model.88023_t
Valid prediction for GlimmerHMM_glimmerT_50856-T1
Valid prediction for GlimmerHMM_glimmerT_50846-T1
Valid prediction for snap_scaffold_22-snap.1312-T1
Valid prediction for snap_scaffold_22-snap.1321-T1
Valid prediction for GeneMark_model.88046_t
Valid prediction for GeneMark_model.88048_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.88057_t
Valid prediction for snap_scaffold_22-snap.1314-T1
Valid prediction for GeneMark_model.88049_t
Valid prediction for snap_scaffold_22-snap.1302-T1
Valid prediction for snap_scaffold_22-snap.1297-T1
Valid prediction for GeneMark_model.88024_t
Valid prediction for GlimmerHMM_glimmerT_50852-T1
Valid prediction for GeneMark_model.88068_t
Valid prediction for snap_scaffold_22-snap.1311-T1
Valid prediction for GeneMark_model.88034_t
Valid prediction for GeneMark_model.88015_t
Valid prediction for GeneMark_model.88047_t
Valid prediction for GeneMark_model.88037_t
Valid prediction for GlimmerHMM_glimmerT_50844-T1
Valid prediction for GeneMark_model.88027_t
Valid prediction for GeneMark_model.88022_t
Valid prediction for snap_scaffold_22-snap.1310-T1
Valid prediction for snap_scaffold_22-snap.1306-T1
Valid prediction for GlimmerHMM_glimmerT_50841-T1
Valid prediction for snap_scaffold_22-snap.1315-T1
Valid prediction for GeneMark_model.88018_t
Valid prediction for GeneMark_model.88019_t
Valid prediction for GeneMark_model.88035_t
Valid prediction for snap_scaffold_22-snap.1298-T1
Valid prediction for GeneMark_model.88032_t
Valid prediction for GlimmerHMM_glimmerT_50857-T1
Valid prediction for snap_scaffold_22-snap.1322-T1
Valid prediction for GeneMark_model.88061_t
Valid prediction for GlimmerHMM_glimmerT_50843-T1
Valid prediction for GlimmerHMM_glimmerT_50854-T1
Valid prediction for GeneMark_model.88013_t
Valid prediction for snap_scaffold_22-snap.1317-T1
Valid prediction for GeneMark_model.88031_t
Valid prediction for Augustus_model.g34090.t1
Valid prediction for GeneMark_model.88055_t
Valid prediction for GlimmerHMM_glimmerT_50850-T1
Valid prediction for GeneMark_model.88029_t
Valid prediction for GeneMark_model.88059_t
Valid prediction for GlimmerHMM_glimmerT_50842-T1
Valid prediction for GeneMark_model.88021_t
Valid prediction for snap_scaffold_22-snap.1295-T1
Valid prediction for GeneMark_model.88063_t
Valid prediction for Augustus_model.g34087.t1
Valid prediction for GeneMark_model.88066_t
Valid prediction for Augustus_model.g34084.t1
Valid prediction for snap_scaffold_22-snap.1308-T1
Valid prediction for GeneMark_model.88042_t
Valid prediction for GeneMark_model.88025_t
Valid prediction for snap_scaffold_22-snap.1320-T1
Valid prediction for GeneMark_model.88040_t
Valid prediction for GeneMark_model.88051_t
Valid prediction for GeneMark_model.88044_t
Valid prediction for snap_scaffold_22-snap.1318-T1
Valid prediction for snap_scaffold_22-snap.1316-T1
Valid prediction for snap_scaffold_22-snap.1300-T1
Valid prediction for GeneMark_model.88069_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8860, rend_intergenic: 3633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9942, rend_intergenic: 8903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34690, rend_intergenic: 10485  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36957, rend_intergenic: 34805  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45222, rend_intergenic: 37052  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52221, rend_intergenic: 47691  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63991, rend_intergenic: 52344  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73005, rend_intergenic: 68048  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75502, rend_intergenic: 73723  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78760, rend_intergenic: 76592  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84246, rend_intergenic: 79116  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93365, rend_intergenic: 84571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110859, rend_intergenic: 93596  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115952, rend_intergenic: 114098  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120973, rend_intergenic: 118625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125924, rend_intergenic: 121027  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 132010
-exon list size: 602


building trellis

0.2    
0.3    
0.5    
0.7    
0.8    
1.0    
1.2    
1.3    
1.5    
1.7    
1.8    
2.0    
2.2    
2.3    
2.5    
2.6    
2.8    
3.0    
3.1    
3.3    
3.5    
3.6    
3.8    
4.0    
4.1    
4.3    
4.5    
4.6    
4.8    
5.0    
5.1    
5.3    
5.5    
5.6    
5.8    
6.0    
6.1    
6.3    
6.5    
6.6    
6.8    
7.0    
7.1    
7.3    
7.5    
7.6    
7.8    
7.9    
8.1    
8.3    
8.4    
8.6    
8.8    
8.9    
9.1    
9.3    
9.4    
9.6    
9.8    
9.9    
10.1    
10.3    
10.4    
10.6    
10.8    
10.9    
11.1    
11.3    
11.4    
11.6    
11.8    
11.9    
12.1    
12.3    
12.4    
12.6    
12.7    
12.9    
13.1    
13.2    
13.4    
13.6    
13.7    
13.9    
14.1    
14.2    
14.4    
14.6    
14.7    
14.9    
15.1    
15.2    
15.4    
15.6    
15.7    
15.9    
16.1    
16.2    
16.4    
16.6    
16.7    
16.9    
17.1    
17.2    
17.4    
17.5    
17.7    
17.9    
18.0    
18.2    
18.4    
18.5    
18.7    
18.9    
19.0    
19.2    
19.4    
19.5    
19.7    
19.9    
20.0    
20.2    
20.4    
20.5    
20.7    
20.9    
21.0    
21.2    
21.4    
21.5    
21.7    
21.9    
22.0    
22.2    
22.4    
22.5    
22.7    
22.8    
23.0    
23.2    
23.3    
23.5    
23.7    
23.8    
24.0    
24.2    
24.3    
24.5    
24.7    
24.8    
25.0    
25.2    
25.3    
25.5    
25.7    
25.8    
26.0    
26.2    
26.3    
26.5    
26.7    
26.8    
27.0    
27.2    
27.3    
27.5    
27.6    
27.8    
28.0    
28.1    
28.3    
28.5    
28.6    
28.8    
29.0    
29.1    
29.3    
29.5    
29.6    
29.8    
30.0    
30.1    
30.3    
30.5    
30.6    
30.8    
31.0    
31.1    
31.3    
31.5    
31.6    
31.8    
32.0    
32.1    
32.3    
32.5    
32.6    
32.8    
32.9    
33.1    
33.3    
33.4    
33.6    
33.8    
33.9    
34.1    
34.3    
34.4    
34.6    
34.8    
34.9    
35.1    
35.3    
35.4    
35.6    
35.8    
35.9    
36.1    
36.3    
36.4    
36.6    
36.8    
36.9    
37.1    
37.3    
37.4    
37.6    
37.7    
37.9    
38.1    
38.2    
38.4    
38.6    
38.7    
38.9    
39.1    
39.2    
39.4    
39.6    
39.7    
39.9    
40.1    
40.2    
40.4    
40.6    
40.7    
40.9    
41.1    
41.2    
41.4    
41.6    
41.7    
41.9    
42.1    
42.2    
42.4    
42.5    
42.7    
42.9    
43.0    
43.2    
43.4    
43.5    
43.7    
43.9    
44.0    
44.2    
44.4    
44.5    
44.7    
44.9    
45.0    
45.2    
45.4    
45.5    
45.7    
45.9    
46.0    
46.2    
46.4    
46.5    
46.7    
46.9    
47.0    
47.2    
47.4    
47.5    
47.7    
47.8    
48.0    
48.2    
48.3    
48.5    
48.7    
48.8    
49.0    
49.2    
49.3    
49.5    
49.7    
49.8    
50.0    
50.2    
50.3    
50.5    
50.7    
50.8    
51.0    
51.2    
51.3    
51.5    
51.7    
51.8    
52.0    
52.2    
52.3    
52.5    
52.6    
52.8    
53.0    
53.1    
53.3    
53.5    
53.6    
53.8    
54.0    
54.1    
54.3    
54.5    
54.6    
54.8    
55.0    
55.1    
55.3    
55.5    
55.6    
55.8    
56.0    
56.1    
56.3    
56.5    
56.6    
56.8    
57.0    
57.1    
57.3    
57.5    
57.6    
57.8    
57.9    
58.1    
58.3    
58.4    
58.6    
58.8    
58.9    
59.1    
59.3    
59.4    
59.6    
59.8    
59.9    
60.1    
60.3    
60.4    
60.6    
60.8    
60.9    
61.1    
61.3    
61.4    
61.6    
61.8    
61.9    
62.1    
62.3    
62.4    
62.6    
62.7    
62.9    
63.1    
63.2    
63.4    
63.6    
63.7    
63.9    
64.1    
64.2    
64.4    
64.6    
64.7    
64.9    
65.1    
65.2    
65.4    
65.6    
65.7    
65.9    
66.1    
66.2    
66.4    
66.6    
66.7    
66.9    
67.1    
67.2    
67.4    
67.5    
67.7    
67.9    
68.0    
68.2    
68.4    
68.5    
68.7    
68.9    
69.0    
69.2    
69.4    
69.5    
69.7    
69.9    
70.0    
70.2    
70.4    
70.5    
70.7    
70.9    
71.0    
71.2    
71.4    
71.5    
71.7    
71.9    
72.0    
72.2    
72.4    
72.5    
72.7    
72.8    
73.0    
73.2    
73.3    
73.5    
73.7    
73.8    
74.0    
74.2    
74.3    
74.5    
74.7    
74.8    
75.0    
75.2    
75.3    
75.5    
75.7    
75.8    
76.0    
76.2    
76.3    
76.5    
76.7    
76.8    
77.0    
77.2    
77.3    
77.5    
77.6    
77.8    
78.0    
78.1    
78.3    
78.5    
78.6    
78.8    
79.0    
79.1    
79.3    
79.5    
79.6    
79.8    
80.0    
80.1    
80.3    
80.5    
80.6    
80.8    
81.0    
81.1    
81.3    
81.5    
81.6    
81.8    
82.0    
82.1    
82.3    
82.5    
82.6    
82.8    
82.9    
83.1    
83.3    
83.4    
83.6    
83.8    
83.9    
84.1    
84.3    
84.4    
84.6    
84.8    
84.9    
85.1    
85.3    
85.4    
85.6    
85.8    
85.9    
86.1    
86.3    
86.4    
86.6    
86.8    
86.9    
87.1    
87.3    
87.4    
87.6    
87.7    
87.9    
88.1    
88.2    
88.4    
88.6    
88.7    
88.9    
89.1    
89.2    
89.4    
89.6    
89.7    
89.9    
90.1    
90.2    
90.4    
90.6    
90.7    
90.9    
91.1    
91.2    
91.4    
91.6    
91.7    
91.9    
92.1    
92.2    
92.4    
92.5    
92.7    
92.9    
93.0    
93.2    
93.4    
93.5    
93.7    
93.9    
94.0    
94.2    
94.4    
94.5    
94.7    
94.9    
95.0    
95.2    
95.4    
95.5    
95.7    
95.9    
96.0    
96.2    
96.4    
96.5    
96.7    
96.9    
97.0    
97.2    
97.4    
97.5    
97.7    
97.8    
98.0    
98.2    
98.3    
98.5    
98.7    
98.8    
99.0    
99.2    
99.3    
99.5    
99.7    
99.8    
-found 43 predictions from path traversal
Error with prediction: snap lend_intergenic: 8860, rend_intergenic: 3633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9942, rend_intergenic: 8903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34690, rend_intergenic: 10485  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36957, rend_intergenic: 34805  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45222, rend_intergenic: 37052  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52221, rend_intergenic: 47691  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63991, rend_intergenic: 52344  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73005, rend_intergenic: 68048  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75502, rend_intergenic: 73723  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78760, rend_intergenic: 76592  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84246, rend_intergenic: 79116  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93365, rend_intergenic: 84571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110859, rend_intergenic: 93596  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115952, rend_intergenic: 114098  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120973, rend_intergenic: 118625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125924, rend_intergenic: 121027  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 6 predictions persist after filtering for low support