-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_5549451-5725520

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_50701-T1
Valid prediction for GeneMark_model.87701_t
Valid prediction for GeneMark_model.87673_t
Valid prediction for Augustus_model.g33968.t1
Valid prediction for snap_scaffold_22-snap.1068-T1
Valid prediction for snap_scaffold_22-snap.1065-T1
Valid prediction for GeneMark_model.87736_t
Valid prediction for GeneMark_model.87677_t
Valid prediction for GeneMark_model.87697_t
Valid prediction for snap_scaffold_22-snap.1062-T1
Valid prediction for snap_scaffold_22-snap.1051-T1
Valid prediction for GeneMark_model.87693_t
Valid prediction for snap_scaffold_22-snap.1046-T1
Valid prediction for snap_scaffold_22-snap.1085-T1
Valid prediction for snap_scaffold_22-snap.1042-T1
Valid prediction for GlimmerHMM_glimmerT_50706-T1
Valid prediction for snap_scaffold_22-snap.1054-T1
Valid prediction for GeneMark_model.87726_t
Valid prediction for Augustus_model.g33973.t1
Valid prediction for Augustus_model.g33980.t1
Valid prediction for snap_scaffold_22-snap.1073-T1
Valid prediction for Augustus_model.g33984.t1
Valid prediction for GeneMark_model.87710_t
Valid prediction for GeneMark_model.87705_t
Valid prediction for GeneMark_model.87675_t
Valid prediction for GeneMark_model.87680_t
Valid prediction for GeneMark_model.87682_t
Valid prediction for snap_scaffold_22-snap.1057-T1
Valid prediction for snap_scaffold_22-snap.1077-T1
Valid prediction for GeneMark_model.87698_t
Valid prediction for snap_scaffold_22-snap.1060-T1
Valid prediction for GeneMark_model.87683_t
Valid prediction for GeneMark_model.87734_t
Valid prediction for GeneMark_model.87732_t
Valid prediction for snap_scaffold_22-snap.1081-T1
Valid prediction for snap_scaffold_22-snap.1058-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for Augustus_model.g33978.t1
Valid prediction for GeneMark_model.87695_t
Valid prediction for snap_scaffold_22-snap.1047-T1
Valid prediction for Augustus_model.g33983.t1
Valid prediction for snap_scaffold_22-snap.1039-T1
Valid prediction for snap_scaffold_22-snap.1083-T1
Valid prediction for GeneMark_model.87717_t
Valid prediction for GeneMark_model.87721_t
Valid prediction for Augustus_model.g33979.t1
Valid prediction for GeneMark_model.87722_t
Valid prediction for snap_scaffold_22-snap.1038-T1
Valid prediction for GeneMark_model.87684_t
Valid prediction for GeneMark_model.87730_t
Valid prediction for snap_scaffold_22-snap.1079-T1
Valid prediction for GeneMark_model.87699_t
Valid prediction for Augustus_model.g33982.t1
Valid prediction for snap_scaffold_22-snap.1055-T1
Valid prediction for GlimmerHMM_glimmerT_50692-T1
Valid prediction for GlimmerHMM_glimmerT_50699-T1
Valid prediction for snap_scaffold_22-snap.1070-T1
Valid prediction for GeneMark_model.87712_t
Valid prediction for GlimmerHMM_glimmerT_50695-T1
Valid prediction for snap_scaffold_22-snap.1048-T1
Valid prediction for snap_scaffold_22-snap.1063-T1
Valid prediction for GeneMark_model.87728_t
Valid prediction for GeneMark_model.87715_t
Valid prediction for GeneMark_model.87691_t
Valid prediction for GlimmerHMM_glimmerT_50704-T1
Valid prediction for GeneMark_model.87687_t
Valid prediction for GeneMark_model.87708_t
Valid prediction for GlimmerHMM_glimmerT_50703-T1
Valid prediction for GeneMark_model.87718_t
Valid prediction for Augustus_model.g33976.t1
Valid prediction for snap_scaffold_22-snap.1072-T1
Valid prediction for GeneMark_model.87703_t
Valid prediction for snap_scaffold_22-snap.1043-T1
Valid prediction for GeneMark_model.87685_t
Valid prediction for GlimmerHMM_glimmerT_50696-T1
Valid prediction for GeneMark_model.87689_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_50697-T1
Valid prediction for snap_scaffold_22-snap.1053-T1
Valid prediction for snap_scaffold_22-snap.1049-T1
Valid prediction for GeneMark_model.87727_t
Valid prediction for GeneMark_model.87694_t
Valid prediction for GeneMark_model.87735_t
Valid prediction for GeneMark_model.87709_t
Valid prediction for GeneMark_model.87688_t
Valid prediction for GeneMark_model.87690_t
Valid prediction for GeneMark_model.87720_t
Valid prediction for GeneMark_model.87676_t
Valid prediction for snap_scaffold_22-snap.1071-T1
Valid prediction for GeneMark_model.87711_t
Valid prediction for GlimmerHMM_glimmerT_50691-T1
Valid prediction for GeneMark_model.87681_t
Valid prediction for GeneMark_model.87704_t
Valid prediction for Augustus_model.g33971.t1
Valid prediction for snap_scaffold_22-snap.1080-T1
Valid prediction for GlimmerHMM_glimmerT_50690-T1
Valid prediction for snap_scaffold_22-snap.1050-T1
Valid prediction for snap_scaffold_22-snap.1069-T1
Valid prediction for snap_scaffold_22-snap.1059-T1
Valid prediction for snap_scaffold_22-snap.1082-T1
Valid prediction for GlimmerHMM_glimmerT_50693-T1
Valid prediction for GeneMark_model.87686_t
Valid prediction for snap_scaffold_22-snap.1078-T1
Valid prediction for snap_scaffold_22-snap.1074-T1
Valid prediction for Augustus_model.g33972.t1
Valid prediction for snap_scaffold_22-snap.1036-T1
Valid prediction for GeneMark_model.87678_t
Valid prediction for GeneMark_model.87731_t
Valid prediction for GeneMark_model.87706_t
Valid prediction for GeneMark_model.87719_t
Valid prediction for GeneMark_model.87674_t
Valid prediction for Augustus_model.g33975.t1
Valid prediction for GlimmerHMM_glimmerT_50698-T1
Valid prediction for GeneMark_model.87713_t
Valid prediction for Augustus_model.g33970.t1
Valid prediction for GlimmerHMM_glimmerT_50700-T1
Valid prediction for snap_scaffold_22-snap.1040-T1
Valid prediction for snap_scaffold_22-snap.1041-T1
Valid prediction for snap_scaffold_22-snap.1061-T1
Valid prediction for snap_scaffold_22-snap.1044-T1
Valid prediction for GeneMark_model.87702_t
Valid prediction for GeneMark_model.87723_t
Valid prediction for snap_scaffold_22-snap.1064-T1
Valid prediction for GeneMark_model.87672_t
Valid prediction for GeneMark_model.87707_t
Valid prediction for GlimmerHMM_glimmerT_50694-T1
Valid prediction for GeneMark_model.87729_t
Valid prediction for snap_scaffold_22-snap.1056-T1
Valid prediction for Augustus_model.g33974.t1
Valid prediction for snap_scaffold_22-snap.1052-T1
Valid prediction for snap_scaffold_22-snap.1066-T1
Valid prediction for GeneMark_model.87725_t
Valid prediction for Augustus_model.g33981.t1
Valid prediction for Augustus_model.g33969.t1
Valid prediction for GeneMark_model.87733_t
Valid prediction for snap_scaffold_22-snap.1037-T1
Valid prediction for GlimmerHMM_glimmerT_50702-T1
Valid prediction for Augustus_model.g33977.t1
Valid prediction for snap_scaffold_22-snap.1067-T1
Valid prediction for GlimmerHMM_glimmerT_50705-T1
Valid prediction for snap_scaffold_22-snap.1076-T1
Valid prediction for snap_scaffold_22-snap.1084-T1
Valid prediction for GeneMark_model.87692_t
Valid prediction for GeneMark_model.87700_t
Valid prediction for GeneMark_model.87716_t
Valid prediction for GeneMark_model.87679_t
Valid prediction for snap_scaffold_22-snap.1075-T1
Valid prediction for GeneMark_model.87724_t
Valid prediction for snap_scaffold_22-snap.1045-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8519, rend_intergenic: 5543  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20368, rend_intergenic: 14608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37631, rend_intergenic: 27300  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52407, rend_intergenic: 45850  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53065, rend_intergenic: 52695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55157, rend_intergenic: 53429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61475, rend_intergenic: 58544  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66916, rend_intergenic: 65258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68522, rend_intergenic: 67840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79674, rend_intergenic: 77972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87980, rend_intergenic: 82583  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97185, rend_intergenic: 94694  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108771, rend_intergenic: 101244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111880, rend_intergenic: 109467  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114883, rend_intergenic: 112193  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119259, rend_intergenic: 116601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120485, rend_intergenic: 119845  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129413, rend_intergenic: 128127  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146440, rend_intergenic: 142733  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147752, rend_intergenic: 146757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158875, rend_intergenic: 147770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171846, rend_intergenic: 169686  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173310, rend_intergenic: 172762  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 176070
-exon list size: 725


building trellis

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96.8    
97.0    
97.1    
97.2    
97.4    
97.5    
97.7    
97.8    
97.9    
98.1    
98.2    
98.3    
98.5    
98.6    
98.8    
98.9    
99.0    
99.2    
99.3    
99.4    
99.6    
99.7    
99.9    
-found 49 predictions from path traversal
Error with prediction: snap lend_intergenic: 8519, rend_intergenic: 5543  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20368, rend_intergenic: 14608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37631, rend_intergenic: 27300  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52407, rend_intergenic: 45850  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53065, rend_intergenic: 52695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55157, rend_intergenic: 53429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61475, rend_intergenic: 58544  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66916, rend_intergenic: 65258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68522, rend_intergenic: 67840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79674, rend_intergenic: 77972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87980, rend_intergenic: 82583  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97185, rend_intergenic: 94694  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108771, rend_intergenic: 101244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111880, rend_intergenic: 109467  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114883, rend_intergenic: 112193  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119259, rend_intergenic: 116601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120485, rend_intergenic: 119845  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129413, rend_intergenic: 128127  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146440, rend_intergenic: 142733  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147752, rend_intergenic: 146757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158875, rend_intergenic: 147770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171846, rend_intergenic: 169686  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173310, rend_intergenic: 172762  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support