-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_5385834-5554992

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.87660_t
Valid prediction for snap_scaffold_22-snap.1010-T1
Valid prediction for GlimmerHMM_glimmerT_50667-T1
Valid prediction for snap_scaffold_22-snap.1033-T1
Valid prediction for GlimmerHMM_glimmerT_50684-T1
Valid prediction for snap_scaffold_22-snap.1019-T1
Valid prediction for Augustus_model.g33966.t1
Valid prediction for snap_scaffold_22-snap.1030-T1
Valid prediction for GlimmerHMM_glimmerT_50672-T1
Valid prediction for GeneMark_model.87664_t
Valid prediction for snap_scaffold_22-snap.1008-T1
Valid prediction for snap_scaffold_22-snap.1027-T1
Valid prediction for GlimmerHMM_glimmerT_50673-T1
Valid prediction for GlimmerHMM_glimmerT_50683-T1
Valid prediction for GlimmerHMM_glimmerT_50670-T1
Valid prediction for GeneMark_model.87655_t
Valid prediction for GeneMark_model.87649_t
Valid prediction for GlimmerHMM_glimmerT_50679-T1
Valid prediction for Augustus_model.g33959.t1
Valid prediction for GlimmerHMM_glimmerT_50676-T1
Valid prediction for GeneMark_model.87647_t
Valid prediction for GlimmerHMM_glimmerT_50666-T1
Valid prediction for snap_scaffold_22-snap.1031-T1
Valid prediction for GeneMark_model.87643_t
Valid prediction for Augustus_model.g33960.t1
Valid prediction for GeneMark_model.87630_t
Valid prediction for Augustus_model.g33964.t1
Valid prediction for GlimmerHMM_glimmerT_50675-T1
Valid prediction for GlimmerHMM_glimmerT_50687-T1
Valid prediction for GeneMark_model.87651_t
Valid prediction for snap_scaffold_22-snap.1021-T1
Valid prediction for snap_scaffold_22-snap.1009-T1
Valid prediction for GeneMark_model.87639_t
Valid prediction for snap_scaffold_22-snap.1024-T1
Valid prediction for snap_scaffold_22-snap.1011-T1
Valid prediction for GeneMark_model.87657_t
Valid prediction for GeneMark_model.87671_t
Valid prediction for GeneMark_model.87642_t
Valid prediction for snap_scaffold_22-snap.1022-T1
Valid prediction for GeneMark_model.87659_t
Valid prediction for Augustus_model.g33962.t1
Valid prediction for GeneMark_model.87632_t
Valid prediction for snap_scaffold_22-snap.1014-T1
Valid prediction for snap_scaffold_22-snap.1015-T1
Valid prediction for snap_scaffold_22-snap.1025-T1
Valid prediction for GeneMark_model.87666_t
Valid prediction for GeneMark_model.87635_t
Valid prediction for GeneMark_model.87641_t
Valid prediction for snap_scaffold_22-snap.1017-T1
Valid prediction for snap_scaffold_22-snap.1006-T1
Valid prediction for GeneMark_model.87645_t
Valid prediction for GeneMark_model.87668_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_22-snap.1005-T1
Valid prediction for GlimmerHMM_glimmerT_50668-T1
Valid prediction for GeneMark_model.87648_t
Valid prediction for GeneMark_model.87662_t
Valid prediction for GeneMark_model.87637_t
Valid prediction for snap_scaffold_22-snap.1012-T1
Valid prediction for GlimmerHMM_glimmerT_50685-T1
Valid prediction for snap_scaffold_22-snap.1034-T1
Valid prediction for GlimmerHMM_glimmerT_50678-T1
Valid prediction for GeneMark_model.87638_t
Valid prediction for snap_scaffold_22-snap.1036-T1
Valid prediction for GlimmerHMM_glimmerT_50680-T1
Valid prediction for GeneMark_model.87640_t
Valid prediction for GlimmerHMM_glimmerT_50677-T1
Valid prediction for GeneMark_model.87665_t
Valid prediction for snap_scaffold_22-snap.1023-T1
Valid prediction for GeneMark_model.87650_t
Valid prediction for GeneMark_model.87631_t
Valid prediction for snap_scaffold_22-snap.1020-T1
Valid prediction for snap_scaffold_22-snap.1013-T1
Valid prediction for GeneMark_model.87667_t
Valid prediction for snap_scaffold_22-snap.1018-T1
Valid prediction for snap_scaffold_22-snap.1032-T1
Valid prediction for Augustus_model.g33961.t1
Valid prediction for GeneMark_model.87629_t
Valid prediction for GeneMark_model.87644_t
Valid prediction for GeneMark_model.87663_t
Valid prediction for GeneMark_model.87654_t
Valid prediction for GlimmerHMM_glimmerT_50682-T1
Valid prediction for GlimmerHMM_glimmerT_50671-T1
Valid prediction for GeneMark_model.87656_t
Valid prediction for GeneMark_model.87669_t
Valid prediction for GlimmerHMM_glimmerT_50686-T1
Valid prediction for GeneMark_model.87653_t
Valid prediction for GeneMark_model.87634_t
Valid prediction for GeneMark_model.87646_t
Valid prediction for snap_scaffold_22-snap.1035-T1
Valid prediction for GlimmerHMM_glimmerT_50681-T1
Valid prediction for Augustus_model.g33965.t1
Valid prediction for snap_scaffold_22-snap.1016-T1
Valid prediction for GlimmerHMM_glimmerT_50688-T1
Valid prediction for GeneMark_model.87636_t
Valid prediction for GeneMark_model.87658_t
Valid prediction for GeneMark_model.87661_t
Valid prediction for GeneMark_model.87633_t
Valid prediction for snap_scaffold_22-snap.1028-T1
Valid prediction for GeneMark_model.87672_t
Valid prediction for Augustus_model.g33963.t1
Valid prediction for GeneMark_model.87670_t
Valid prediction for GlimmerHMM_glimmerT_50669-T1
Valid prediction for snap_scaffold_22-snap.1007-T1
Valid prediction for snap_scaffold_22-snap.1029-T1
Valid prediction for GlimmerHMM_glimmerT_50674-T1
Valid prediction for snap_scaffold_22-snap.1026-T1
Valid prediction for GeneMark_model.87652_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5306, rend_intergenic: 3637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84422, rend_intergenic: 79793  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93482, rend_intergenic: 90522  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99883, rend_intergenic: 96226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140471, rend_intergenic: 135417  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 169159
-exon list size: 423


building trellis

0.2    
0.5    
0.7    
0.9    
1.2    
1.4    
1.6    
1.9    
2.1    
2.4    
2.6    
2.8    
3.1    
3.3    
3.5    
3.8    
4.0    
4.2    
4.5    
4.7    
4.9    
5.2    
5.4    
5.6    
5.9    
6.1    
6.4    
6.6    
6.8    
7.1    
7.3    
7.5    
7.8    
8.0    
8.2    
8.5    
8.7    
8.9    
9.2    
9.4    
9.6    
9.9    
10.1    
10.4    
10.6    
10.8    
11.1    
11.3    
11.5    
11.8    
12.0    
12.2    
12.5    
12.7    
12.9    
13.2    
13.4    
13.6    
13.9    
14.1    
14.4    
14.6    
14.8    
15.1    
15.3    
15.5    
15.8    
16.0    
16.2    
16.5    
16.7    
16.9    
17.2    
17.4    
17.6    
17.9    
18.1    
18.4    
18.6    
18.8    
19.1    
19.3    
19.5    
19.8    
20.0    
20.2    
20.5    
20.7    
20.9    
21.2    
21.4    
21.6    
21.9    
22.1    
22.4    
22.6    
22.8    
23.1    
23.3    
23.5    
23.8    
24.0    
24.2    
24.5    
24.7    
24.9    
25.2    
25.4    
25.6    
25.9    
26.1    
26.4    
26.6    
26.8    
27.1    
27.3    
27.5    
27.8    
28.0    
28.2    
28.5    
28.7    
28.9    
29.2    
29.4    
29.6    
29.9    
30.1    
30.4    
30.6    
30.8    
31.1    
31.3    
31.5    
31.8    
32.0    
32.2    
32.5    
32.7    
32.9    
33.2    
33.4    
33.6    
33.9    
34.1    
34.4    
34.6    
34.8    
35.1    
35.3    
35.5    
35.8    
36.0    
36.2    
36.5    
36.7    
36.9    
37.2    
37.4    
37.6    
37.9    
38.1    
38.4    
38.6    
38.8    
39.1    
39.3    
39.5    
39.8    
40.0    
40.2    
40.5    
40.7    
40.9    
41.2    
41.4    
41.6    
41.9    
42.1    
42.4    
42.6    
42.8    
43.1    
43.3    
43.5    
43.8    
44.0    
44.2    
44.5    
44.7    
44.9    
45.2    
45.4    
45.6    
45.9    
46.1    
46.4    
46.6    
46.8    
47.1    
47.3    
47.5    
47.8    
48.0    
48.2    
48.5    
48.7    
48.9    
49.2    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.8    
51.1    
51.3    
51.5    
51.8    
52.0    
52.2    
52.5    
52.7    
52.9    
53.2    
53.4    
53.6    
53.9    
54.1    
54.4    
54.6    
54.8    
55.1    
55.3    
55.5    
55.8    
56.0    
56.2    
56.5    
56.7    
56.9    
57.2    
57.4    
57.6    
57.9    
58.1    
58.4    
58.6    
58.8    
59.1    
59.3    
59.5    
59.8    
60.0    
60.2    
60.5    
60.7    
60.9    
61.2    
61.4    
61.6    
61.9    
62.1    
62.4    
62.6    
62.8    
63.1    
63.3    
63.5    
63.8    
64.0    
64.2    
64.5    
64.7    
64.9    
65.2    
65.4    
65.6    
65.9    
66.1    
66.4    
66.6    
66.8    
67.1    
67.3    
67.5    
67.8    
68.0    
68.2    
68.5    
68.7    
68.9    
69.2    
69.4    
69.6    
69.9    
70.1    
70.4    
70.6    
70.8    
71.1    
71.3    
71.5    
71.8    
72.0    
72.2    
72.5    
72.7    
72.9    
73.2    
73.4    
73.6    
73.9    
74.1    
74.4    
74.6    
74.8    
75.1    
75.3    
75.5    
75.8    
76.0    
76.2    
76.5    
76.7    
76.9    
77.2    
77.4    
77.6    
77.9    
78.1    
78.4    
78.6    
78.8    
79.1    
79.3    
79.5    
79.8    
80.0    
80.2    
80.5    
80.7    
80.9    
81.2    
81.4    
81.6    
81.9    
82.1    
82.4    
82.6    
82.8    
83.1    
83.3    
83.5    
83.8    
84.0    
84.2    
84.5    
84.7    
84.9    
85.2    
85.4    
85.6    
85.9    
86.1    
86.4    
86.6    
86.8    
87.1    
87.3    
87.5    
87.8    
88.0    
88.2    
88.5    
88.7    
88.9    
89.2    
89.4    
89.6    
89.9    
90.1    
90.4    
90.6    
90.8    
91.1    
91.3    
91.5    
91.8    
92.0    
92.2    
92.5    
92.7    
92.9    
93.2    
93.4    
93.6    
93.9    
94.1    
94.4    
94.6    
94.8    
95.1    
95.3    
95.5    
95.8    
96.0    
96.2    
96.5    
96.7    
96.9    
97.2    
97.4    
97.6    
97.9    
98.1    
98.4    
98.6    
98.8    
99.1    
99.3    
99.5    
99.8    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 5306, rend_intergenic: 3637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84422, rend_intergenic: 79793  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93482, rend_intergenic: 90522  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99883, rend_intergenic: 96226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140471, rend_intergenic: 135417  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 8 predictions persist after filtering for low support