-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_5216324-5387859

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.87594_t
Valid prediction for snap_scaffold_22-snap.1000-T1
Valid prediction for GeneMark_model.87626_t
Valid prediction for snap_scaffold_22-snap.971-T1
Valid prediction for Augustus_model.g33956.t1
Valid prediction for GlimmerHMM_glimmerT_50652-T1
Valid prediction for GlimmerHMM_glimmerT_50639-T1
Valid prediction for GeneMark_model.87589_t
Valid prediction for snap_scaffold_22-snap.997-T1
Valid prediction for snap_scaffold_22-snap.993-T1
Valid prediction for GeneMark_model.87612_t
Valid prediction for GeneMark_model.87614_t
Valid prediction for snap_scaffold_22-snap.981-T1
Valid prediction for snap_scaffold_22-snap.974-T1
Valid prediction for GlimmerHMM_glimmerT_50644-T1
Valid prediction for GeneMark_model.87609_t
Valid prediction for GlimmerHMM_glimmerT_50642-T1
Valid prediction for snap_scaffold_22-snap.1003-T1
Valid prediction for snap_scaffold_22-snap.995-T1
Valid prediction for GeneMark_model.87587_t
Valid prediction for snap_scaffold_22-snap.978-T1
Valid prediction for GeneMark_model.87621_t
Valid prediction for snap_scaffold_22-snap.999-T1
Valid prediction for snap_scaffold_22-snap.989-T1
Valid prediction for GeneMark_model.87597_t
Valid prediction for snap_scaffold_22-snap.996-T1
Valid prediction for Augustus_model.g33952.t1
Valid prediction for GeneMark_model.87607_t
Valid prediction for GeneMark_model.87604_t
Valid prediction for Augustus_model.g33954.t1
Valid prediction for snap_scaffold_22-snap.983-T1
Valid prediction for GeneMark_model.87595_t
Valid prediction for GeneMark_model.87585_t
Valid prediction for GeneMark_model.87622_t
Valid prediction for snap_scaffold_22-snap.980-T1
Valid prediction for GeneMark_model.87602_t
Valid prediction for GeneMark_model.87610_t
Valid prediction for snap_scaffold_22-snap.990-T1
Valid prediction for GlimmerHMM_glimmerT_50659-T1
Valid prediction for GeneMark_model.87606_t
Valid prediction for GlimmerHMM_glimmerT_50646-T1
Valid prediction for snap_scaffold_22-snap.973-T1
Valid prediction for GeneMark_model.87608_t
Valid prediction for GlimmerHMM_glimmerT_50655-T1
Valid prediction for GeneMark_model.87623_t
Valid prediction for GeneMark_model.87600_t
Valid prediction for snap_scaffold_22-snap.994-T1
Valid prediction for GeneMark_model.87592_t
Valid prediction for Augustus_model.g33957.t1
Valid prediction for snap_scaffold_22-snap.992-T1
Valid prediction for snap_scaffold_22-snap.985-T1
Valid prediction for GeneMark_model.87591_t
Valid prediction for GlimmerHMM_glimmerT_50661-T1
Valid prediction for snap_scaffold_22-snap.987-T1
Valid prediction for GlimmerHMM_glimmerT_50643-T1
Valid prediction for GeneMark_model.87619_t
Valid prediction for GlimmerHMM_glimmerT_50656-T1
Valid prediction for GeneMark_model.87628_t
Valid prediction for GeneMark_model.87616_t
Valid prediction for GlimmerHMM_glimmerT_50648-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.87601_t
Valid prediction for GeneMark_model.87625_t
Valid prediction for GlimmerHMM_glimmerT_50658-T1
Valid prediction for GeneMark_model.87603_t
Valid prediction for GlimmerHMM_glimmerT_50651-T1
Valid prediction for snap_scaffold_22-snap.1002-T1
Valid prediction for snap_scaffold_22-snap.982-T1
Valid prediction for snap_scaffold_22-snap.1004-T1
Valid prediction for Augustus_model.g33950.t1
Valid prediction for GeneMark_model.87582_t
Valid prediction for GlimmerHMM_glimmerT_50641-T1
Valid prediction for GlimmerHMM_glimmerT_50657-T1
Valid prediction for GlimmerHMM_glimmerT_50662-T1
Valid prediction for snap_scaffold_22-snap.977-T1
Valid prediction for GeneMark_model.87613_t
Valid prediction for snap_scaffold_22-snap.991-T1
Valid prediction for snap_scaffold_22-snap.975-T1
Valid prediction for GeneMark_model.87620_t
Valid prediction for snap_scaffold_22-snap.1001-T1
Valid prediction for snap_scaffold_22-snap.972-T1
Valid prediction for snap_scaffold_22-snap.976-T1
Valid prediction for snap_scaffold_22-snap.986-T1
Valid prediction for snap_scaffold_22-snap.984-T1
Valid prediction for GlimmerHMM_glimmerT_50654-T1
Valid prediction for snap_scaffold_22-snap.988-T1
Valid prediction for GeneMark_model.87599_t
Valid prediction for Augustus_model.g33958.t1
Valid prediction for GeneMark_model.87624_t
Valid prediction for GeneMark_model.87583_t
Valid prediction for GlimmerHMM_glimmerT_50650-T1
Valid prediction for GeneMark_model.87598_t
Valid prediction for GlimmerHMM_glimmerT_50660-T1
Valid prediction for GeneMark_model.87590_t
Valid prediction for GlimmerHMM_glimmerT_50664-T1
Valid prediction for GeneMark_model.87615_t
Valid prediction for GlimmerHMM_glimmerT_50640-T1
Valid prediction for GeneMark_model.87627_t
Valid prediction for GeneMark_model.87618_t
Valid prediction for GlimmerHMM_glimmerT_50663-T1
Valid prediction for GlimmerHMM_glimmerT_50653-T1
Valid prediction for GeneMark_model.87584_t
Valid prediction for snap_scaffold_22-snap.979-T1
Valid prediction for GeneMark_model.87586_t
Valid prediction for GeneMark_model.87605_t
Valid prediction for GlimmerHMM_glimmerT_50638-T1
Valid prediction for Augustus_model.g33955.t1
Valid prediction for GlimmerHMM_glimmerT_50647-T1
Valid prediction for snap_scaffold_22-snap.998-T1
Valid prediction for Augustus_model.g33951.t1
Valid prediction for GeneMark_model.87588_t
Valid prediction for GlimmerHMM_glimmerT_50649-T1
Valid prediction for GeneMark_model.87596_t
Valid prediction for GeneMark_model.87593_t
Valid prediction for Augustus_model.g33953.t1
Valid prediction for GeneMark_model.87617_t
Valid prediction for GlimmerHMM_glimmerT_50665-T1
Valid prediction for GlimmerHMM_glimmerT_50637-T1
Valid prediction for GlimmerHMM_glimmerT_50645-T1
Valid prediction for GeneMark_model.87611_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15632, rend_intergenic: 5116  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34481, rend_intergenic: 24507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37302, rend_intergenic: 36508  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48283, rend_intergenic: 46965  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54683, rend_intergenic: 53071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58315, rend_intergenic: 54725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65455, rend_intergenic: 60631  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68620, rend_intergenic: 66380  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70042, rend_intergenic: 69207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77032, rend_intergenic: 70865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116555, rend_intergenic: 115728  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 171536
-exon list size: 516


building trellis

0.2    
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2.9    
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3.3    
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3.7    
3.9    
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5.8    
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8.9    
9.1    
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13.1    
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13.9    
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17.0    
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17.8    
18.0    
18.1    
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18.9    
19.1    
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19.5    
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19.9    
20.1    
20.3    
20.5    
20.7    
20.8    
21.0    
21.2    
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21.6    
21.8    
22.0    
22.2    
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23.9    
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24.9    
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25.5    
25.7    
25.9    
26.1    
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26.8    
27.0    
27.2    
27.4    
27.6    
27.8    
28.0    
28.2    
28.4    
28.6    
28.8    
29.0    
29.2    
29.3    
29.5    
29.7    
29.9    
30.1    
30.3    
30.5    
30.7    
30.9    
31.1    
31.3    
31.5    
31.7    
31.9    
32.0    
32.2    
32.4    
32.6    
32.8    
33.0    
33.2    
33.4    
33.6    
33.8    
34.0    
34.2    
34.4    
34.6    
34.7    
34.9    
35.1    
35.3    
35.5    
35.7    
35.9    
36.1    
36.3    
36.5    
36.7    
36.9    
37.1    
37.3    
37.5    
37.6    
37.8    
38.0    
38.2    
38.4    
38.6    
38.8    
39.0    
39.2    
39.4    
39.6    
39.8    
40.0    
40.2    
40.3    
40.5    
40.7    
40.9    
41.1    
41.3    
41.5    
41.7    
41.9    
42.1    
42.3    
42.5    
42.7    
42.9    
43.1    
43.2    
43.4    
43.6    
43.8    
44.0    
44.2    
44.4    
44.6    
44.8    
45.0    
45.2    
45.4    
45.6    
45.8    
45.9    
46.1    
46.3    
46.5    
46.7    
46.9    
47.1    
47.3    
47.5    
47.7    
47.9    
48.1    
48.3    
48.5    
48.6    
48.8    
49.0    
49.2    
49.4    
49.6    
49.8    
50.0    
50.2    
50.4    
50.6    
50.8    
51.0    
51.2    
51.4    
51.5    
51.7    
51.9    
52.1    
52.3    
52.5    
52.7    
52.9    
53.1    
53.3    
53.5    
53.7    
53.9    
54.1    
54.2    
54.4    
54.6    
54.8    
55.0    
55.2    
55.4    
55.6    
55.8    
56.0    
56.2    
56.4    
56.6    
56.8    
56.9    
57.1    
57.3    
57.5    
57.7    
57.9    
58.1    
58.3    
58.5    
58.7    
58.9    
59.1    
59.3    
59.5    
59.7    
59.8    
60.0    
60.2    
60.4    
60.6    
60.8    
61.0    
61.2    
61.4    
61.6    
61.8    
62.0    
62.2    
62.4    
62.5    
62.7    
62.9    
63.1    
63.3    
63.5    
63.7    
63.9    
64.1    
64.3    
64.5    
64.7    
64.9    
65.1    
65.3    
65.4    
65.6    
65.8    
66.0    
66.2    
66.4    
66.6    
66.8    
67.0    
67.2    
67.4    
67.6    
67.8    
68.0    
68.1    
68.3    
68.5    
68.7    
68.9    
69.1    
69.3    
69.5    
69.7    
69.9    
70.1    
70.3    
70.5    
70.7    
70.8    
71.0    
71.2    
71.4    
71.6    
71.8    
72.0    
72.2    
72.4    
72.6    
72.8    
73.0    
73.2    
73.4    
73.6    
73.7    
73.9    
74.1    
74.3    
74.5    
74.7    
74.9    
75.1    
75.3    
75.5    
75.7    
75.9    
76.1    
76.3    
76.4    
76.6    
76.8    
77.0    
77.2    
77.4    
77.6    
77.8    
78.0    
78.2    
78.4    
78.6    
78.8    
79.0    
79.2    
79.3    
79.5    
79.7    
79.9    
80.1    
80.3    
80.5    
80.7    
80.9    
81.1    
81.3    
81.5    
81.7    
81.9    
82.0    
82.2    
82.4    
82.6    
82.8    
83.0    
83.2    
83.4    
83.6    
83.8    
84.0    
84.2    
84.4    
84.6    
84.7    
84.9    
85.1    
85.3    
85.5    
85.7    
85.9    
86.1    
86.3    
86.5    
86.7    
86.9    
87.1    
87.3    
87.5    
87.6    
87.8    
88.0    
88.2    
88.4    
88.6    
88.8    
89.0    
89.2    
89.4    
89.6    
89.8    
90.0    
90.2    
90.3    
90.5    
90.7    
90.9    
91.1    
91.3    
91.5    
91.7    
91.9    
92.1    
92.3    
92.5    
92.7    
92.9    
93.1    
93.2    
93.4    
93.6    
93.8    
94.0    
94.2    
94.4    
94.6    
94.8    
95.0    
95.2    
95.4    
95.6    
95.8    
95.9    
96.1    
96.3    
96.5    
96.7    
96.9    
97.1    
97.3    
97.5    
97.7    
97.9    
98.1    
98.3    
98.5    
98.6    
98.8    
99.0    
99.2    
99.4    
99.6    
99.8    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 15632, rend_intergenic: 5116  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34481, rend_intergenic: 24507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37302, rend_intergenic: 36508  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48283, rend_intergenic: 46965  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54683, rend_intergenic: 53071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58315, rend_intergenic: 54725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65455, rend_intergenic: 60631  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68620, rend_intergenic: 66380  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70042, rend_intergenic: 69207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77032, rend_intergenic: 70865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116555, rend_intergenic: 115728  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support