-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_5079979-5218000

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_22-snap.964-T1
Valid prediction for snap_scaffold_22-snap.960-T1
Valid prediction for GlimmerHMM_glimmerT_50622-T1
Valid prediction for snap_scaffold_22-snap.967-T1
Valid prediction for Augustus_model.g33948.t1
Valid prediction for GlimmerHMM_glimmerT_50627-T1
Valid prediction for Augustus_model.g33945.t1
Valid prediction for GeneMark_model.87555_t
Valid prediction for GeneMark_model.87579_t
Valid prediction for GlimmerHMM_glimmerT_50634-T1
Valid prediction for GeneMark_model.87559_t
Valid prediction for snap_scaffold_22-snap.956-T1
Valid prediction for snap_scaffold_22-snap.958-T1
Valid prediction for GeneMark_model.87571_t
Valid prediction for snap_scaffold_22-snap.968-T1
Valid prediction for snap_scaffold_22-snap.966-T1
Valid prediction for GeneMark_model.87580_t
Valid prediction for GeneMark_model.87568_t
Valid prediction for GeneMark_model.87570_t
Valid prediction for GlimmerHMM_glimmerT_50625-T1
Valid prediction for GeneMark_model.87577_t
Valid prediction for Augustus_model.g33949.t1
Valid prediction for GlimmerHMM_glimmerT_50636-T1
Valid prediction for GeneMark_model.87556_t
Valid prediction for GlimmerHMM_glimmerT_50635-T1
Valid prediction for GeneMark_model.87575_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.87561_t
Valid prediction for GeneMark_model.87560_t
Valid prediction for GlimmerHMM_glimmerT_50630-T1
Valid prediction for GeneMark_model.87566_t
Valid prediction for snap_scaffold_22-snap.963-T1
Valid prediction for GlimmerHMM_glimmerT_50629-T1
Valid prediction for GlimmerHMM_glimmerT_50633-T1
Valid prediction for GeneMark_model.87565_t
Valid prediction for GlimmerHMM_glimmerT_50624-T1
Valid prediction for snap_scaffold_22-snap.955-T1
Valid prediction for GeneMark_model.87578_t
Valid prediction for GeneMark_model.87563_t
Valid prediction for GlimmerHMM_glimmerT_50631-T1
Valid prediction for GlimmerHMM_glimmerT_50628-T1
Valid prediction for GeneMark_model.87576_t
Valid prediction for GlimmerHMM_glimmerT_50632-T1
Valid prediction for GeneMark_model.87557_t
Valid prediction for GeneMark_model.87573_t
Valid prediction for GlimmerHMM_glimmerT_50623-T1
Valid prediction for snap_scaffold_22-snap.961-T1
Valid prediction for snap_scaffold_22-snap.965-T1
Valid prediction for GeneMark_model.87562_t
Valid prediction for GlimmerHMM_glimmerT_50621-T1
Valid prediction for snap_scaffold_22-snap.962-T1
Valid prediction for Augustus_model.g33947.t1
Valid prediction for Augustus_model.g33946.t1
Valid prediction for snap_scaffold_22-snap.959-T1
Valid prediction for GlimmerHMM_glimmerT_50626-T1
Valid prediction for GeneMark_model.87572_t
Valid prediction for GeneMark_model.87558_t
Valid prediction for GeneMark_model.87564_t
Valid prediction for GeneMark_model.87581_t
Valid prediction for snap_scaffold_22-snap.969-T1
Valid prediction for GeneMark_model.87574_t
Valid prediction for GeneMark_model.87569_t
Valid prediction for GeneMark_model.87567_t
Valid prediction for snap_scaffold_22-snap.957-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10998, rend_intergenic: 9704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 138022
-exon list size: 210


building trellis

0.5    
0.9    
1.4    
1.9    
2.4    
2.8    
3.3    
3.8    
4.2    
4.7    
5.2    
5.7    
6.1    
6.6    
7.1    
7.5    
8.0    
8.5    
9.0    
9.4    
9.9    
10.4    
10.8    
11.3    
11.8    
12.3    
12.7    
13.2    
13.7    
14.2    
14.6    
15.1    
15.6    
16.0    
16.5    
17.0    
17.5    
17.9    
18.4    
18.9    
19.3    
19.8    
20.3    
20.8    
21.2    
21.7    
22.2    
22.6    
23.1    
23.6    
24.1    
24.5    
25.0    
25.5    
25.9    
26.4    
26.9    
27.4    
27.8    
28.3    
28.8    
29.2    
29.7    
30.2    
30.7    
31.1    
31.6    
32.1    
32.5    
33.0    
33.5    
34.0    
34.4    
34.9    
35.4    
35.8    
36.3    
36.8    
37.3    
37.7    
38.2    
38.7    
39.2    
39.6    
40.1    
40.6    
41.0    
41.5    
42.0    
42.5    
42.9    
43.4    
43.9    
44.3    
44.8    
45.3    
45.8    
46.2    
46.7    
47.2    
47.6    
48.1    
48.6    
49.1    
49.5    
50.0    
50.5    
50.9    
51.4    
51.9    
52.4    
52.8    
53.3    
53.8    
54.2    
54.7    
55.2    
55.7    
56.1    
56.6    
57.1    
57.5    
58.0    
58.5    
59.0    
59.4    
59.9    
60.4    
60.8    
61.3    
61.8    
62.3    
62.7    
63.2    
63.7    
64.2    
64.6    
65.1    
65.6    
66.0    
66.5    
67.0    
67.5    
67.9    
68.4    
68.9    
69.3    
69.8    
70.3    
70.8    
71.2    
71.7    
72.2    
72.6    
73.1    
73.6    
74.1    
74.5    
75.0    
75.5    
75.9    
76.4    
76.9    
77.4    
77.8    
78.3    
78.8    
79.2    
79.7    
80.2    
80.7    
81.1    
81.6    
82.1    
82.5    
83.0    
83.5    
84.0    
84.4    
84.9    
85.4    
85.8    
86.3    
86.8    
87.3    
87.7    
88.2    
88.7    
89.2    
89.6    
90.1    
90.6    
91.0    
91.5    
92.0    
92.5    
92.9    
93.4    
93.9    
94.3    
94.8    
95.3    
95.8    
96.2    
96.7    
97.2    
97.6    
98.1    
98.6    
99.1    
99.5    
-found 11 predictions from path traversal
Error with prediction: snap lend_intergenic: 10998, rend_intergenic: 9704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support