-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_4187157-4433039 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_50538-T1 Couldn't classify 174423, 174478 Sorry, prediction pasa_asmbl_29287.p1 fails validation. (CCC) CA 174423-174478 GT AGG (GAG) AG 175397-175821 GT AGG (GTG) AG 177294-177508 TC AAT -recovered pasa_asmbl_29287.p1, terminal, 177294, 177508 -recovered pasa_asmbl_29287.p1, internal, 175397, 175821 Valid prediction for GlimmerHMM_glimmerT_50536-T1 Valid prediction for GeneMark_model.87410_t Valid prediction for snap_scaffold_22-snap.834-T1 Valid prediction for snap_scaffold_22-snap.812-T1 Valid prediction for snap_scaffold_22-snap.841-T1 Valid prediction for HiQ_model.g33879.t1 Valid prediction for snap_scaffold_22-snap.817-T1 Valid prediction for HiQ_model.g33880.t1 Valid prediction for GeneMark_model.87433_t Valid prediction for HiQ_model.g33860.t1 Valid prediction for pasa_asmbl_29293.p1 Valid prediction for GeneMark_model.87423_t Valid prediction for GlimmerHMM_glimmerT_50549-T1 Valid prediction for GeneMark_model.87429_t Valid prediction for GeneMark_model.87442_t Valid prediction for CodingQuarry_transcript_34081-T1 Valid prediction for GlimmerHMM_glimmerT_50514-T1 Valid prediction for pasa_asmbl_29296.p1 Valid prediction for Augustus_model.g33881.t1 Valid prediction for Augustus_model.g33885.t1 Valid prediction for GlimmerHMM_glimmerT_50529-T1 Valid prediction for GeneMark_model.87412_t Valid prediction for GeneMark_model.87411_t Couldn't classify 243212, 243268 Sorry, prediction pasa_asmbl_29298.p1 fails validation. (ATG) AG 239338-239374 GT CGG (ATG) AG 240284-240427 GT AGG (ATG) AG 240642-240773 GT CGG (ATG) AG 241330-241464 GT AGG (TGG) AG 241598-241723 GT AGG (CGG) AG 242487-242626 GT AGG (GAT) AG 243212-243268 AC CGA -recovered pasa_asmbl_29298.p1, initial, 239338, 239374 add_exon() Sorry, pasa_asmbl_29298.p1 240284-240427-initial-1 is invalid. -recovered pasa_asmbl_29298.p1, initial, 240284, 240427 -recovered pasa_asmbl_29298.p1, initial, 240642, 240773 -recovered pasa_asmbl_29298.p1, initial, 241330, 241464 -recovered pasa_asmbl_29298.p1, internal, 239338, 239374 -recovered pasa_asmbl_29298.p1, internal, 240284, 240427 -recovered pasa_asmbl_29298.p1, internal, 240642, 240773 -recovered pasa_asmbl_29298.p1, internal, 241330, 241464 -recovered pasa_asmbl_29298.p1, internal, 241598, 241723 -recovered pasa_asmbl_29298.p1, internal, 242487, 242626 Valid prediction for Augustus_model.g33874.t1 Valid prediction for pasa_asmbl_29282.p1 Valid prediction for pasa_asmbl_29270.p1 Valid prediction for GlimmerHMM_glimmerT_50539-T1 Valid prediction for snap_scaffold_22-snap.801-T1 Valid prediction for Augustus_model.g33891.t1 Valid prediction for GlimmerHMM_glimmerT_50548-T1 Valid prediction for snap_scaffold_22-snap.828-T1 Valid prediction for GlimmerHMM_glimmerT_50525-T1 Valid prediction for GeneMark_model.87416_t Valid prediction for snap_scaffold_22-snap.830-T1 Valid prediction for snap_scaffold_22-snap.810-T1 Valid prediction for GeneMark_model.87453_t Valid prediction for pasa_asmbl_29277.p1 Valid prediction for GeneMark_model.87417_t Valid prediction for GeneMark_model.87435_t Valid prediction for snap_scaffold_22-snap.832-T1 Valid prediction for snap_scaffold_22-snap.829-T1 Valid prediction for HiQ_model.g33883.t1 Valid prediction for snap_scaffold_22-snap.826-T1 Couldn't classify 156298, 156436 Sorry, prediction pasa_asmbl_29274.p1 fails validation. (CTG) AC 156298-156436 GT TGG (GCA) AG 156535-156743 GT GGG (AGC) AG 156994-157122 GT AGG (AGG) AG 157339-157379 GT AGG (ATA) AG 157511-157598 GT AAG (GCT) AG 157702-157838 GT GAG (CTA) AG 158922-159057 GT AGG (GAC) AG 159235-159408 GT AGG (GTA) AG 159565-160065 AC AGA -recovered pasa_asmbl_29274.p1, terminal, 159565, 160065 -recovered pasa_asmbl_29274.p1, internal, 156535, 156743 -recovered pasa_asmbl_29274.p1, internal, 156994, 157122 -recovered pasa_asmbl_29274.p1, internal, 157339, 157379 -recovered pasa_asmbl_29274.p1, internal, 157511, 157598 -recovered pasa_asmbl_29274.p1, internal, 157702, 157838 -recovered pasa_asmbl_29274.p1, internal, 158922, 159057 -recovered pasa_asmbl_29274.p1, internal, 159235, 159408 Valid prediction for CodingQuarry_transcript_34078-T1 Valid prediction for snap_scaffold_22-snap.835-T1 Valid prediction for pasa_asmbl_29290.p2 Valid prediction for Augustus_model.g33872.t1 Valid prediction for GlimmerHMM_glimmerT_50543-T1 Valid prediction for snap_scaffold_22-snap.839-T1 Valid prediction for CodingQuarry_transcript_34075-T1 Valid prediction for snap_scaffold_22-snap.796-T1 Valid prediction for snap_scaffold_22-snap.823-T1 Valid prediction for GlimmerHMM_glimmerT_50532-T1 Valid prediction for snap_scaffold_22-snap.821-T1 Valid prediction for GeneMark_model.87441_t Valid prediction for GeneMark_model.87425_t Valid prediction for GeneMark_model.87444_t Valid prediction for GeneMark_model.87451_t Valid prediction for GlimmerHMM_glimmerT_50533-T1 Valid prediction for GlimmerHMM_glimmerT_50542-T1 Valid prediction for GeneMark_model.87440_t Valid prediction for GlimmerHMM_glimmerT_50513-T1 Valid prediction for GlimmerHMM_glimmerT_50535-T1 Valid prediction for GlimmerHMM_glimmerT_50541-T1 Valid prediction for CodingQuarry_transcript_34083-T1 Valid prediction for GeneMark_model.87437_t Valid prediction for CodingQuarry_transcript_34084-T1 Valid prediction for GlimmerHMM_glimmerT_50537-T1 Valid prediction for CodingQuarry_transcript_34079-T1 Valid prediction for snap_scaffold_22-snap.827-T1 Valid prediction for HiQ_model.g33884.t1 Valid prediction for GeneMark_model.87436_t Couldn't classify 7969, 8168 Sorry, prediction pasa_asmbl_29265.p1 fails validation. (TGT) GC 7969-8168 GT GGG (GCA) AG 9004-9133 GT AGG (GCT) AG 9384-9485 GT AGG (ATC) AG 11206-11457 GT GGG (GAG) AG 14268-14456 GT TGG (GTG) AG 14713-15312 AG GAA -recovered pasa_asmbl_29265.p1, terminal, 14713, 15312 -recovered pasa_asmbl_29265.p1, internal, 9004, 9133 -recovered pasa_asmbl_29265.p1, internal, 9384, 9485 -recovered pasa_asmbl_29265.p1, internal, 11206, 11457 -recovered pasa_asmbl_29265.p1, internal, 14268, 14456 Valid prediction for GeneMark_model.87427_t Valid prediction for Augustus_model.g33861.t1 Valid prediction for GeneMark_model.87413_t Valid prediction for snap_scaffold_22-snap.831-T1 Valid prediction for snap_scaffold_22-snap.836-T1 Valid prediction for GlimmerHMM_glimmerT_50534-T1 Valid prediction for snap_scaffold_22-snap.833-T1 Valid prediction for snap_scaffold_22-snap.813-T1 Valid prediction for Augustus_model.g33876.t1 Valid prediction for GlimmerHMM_glimmerT_50544-T1 Valid prediction for Augustus_model.g33882.t1 Valid prediction for snap_scaffold_22-snap.799-T1 Valid prediction for GeneMark_model.87445_t Valid prediction for CodingQuarry_transcript_34082-T1 Valid prediction for GeneMark_model.87438_t Valid prediction for snap_scaffold_22-snap.798-T1 Valid prediction for GeneMark_model.87439_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g33888.t1 Valid prediction for GlimmerHMM_glimmerT_50520-T1 Valid prediction for Augustus_model.g33877.t1 Valid prediction for CodingQuarry_transcript_34086-T1 Valid prediction for GlimmerHMM_glimmerT_50524-T1 Valid prediction for GlimmerHMM_glimmerT_50523-T1 Valid prediction for Augustus_model.g33865.t1 Valid prediction for GeneMark_model.87448_t Valid prediction for snap_scaffold_22-snap.808-T1 Valid prediction for GlimmerHMM_glimmerT_50521-T1 Valid prediction for snap_scaffold_22-snap.802-T1 Valid prediction for GlimmerHMM_glimmerT_50516-T1 Valid prediction for GlimmerHMM_glimmerT_50518-T1 Couldn't classify 27020, 27246 Sorry, prediction pasa_asmbl_30019.p1 fails validation. (TGT) AC 27020-27246 GT GGG (GCA) AG 27404-27566 GT AGG (GAC) AG 27650-27796 GC AGG (GAT) AG 27914-28063 GT AGG (GGG) AG 28193-28298 GT CGG (TCC) AG 28594-28787 CC AGC -recovered pasa_asmbl_30019.p1, terminal, 28594, 28787 -recovered pasa_asmbl_30019.p1, internal, 27404, 27566 -recovered pasa_asmbl_30019.p1, internal, 27650, 27796 -recovered pasa_asmbl_30019.p1, internal, 27914, 28063 -recovered pasa_asmbl_30019.p1, internal, 28193, 28298 Couldn't classify 173055, 173663 Sorry, prediction pasa_asmbl_29995.p1 fails validation. (GTC) TT 173055-173663 GC AGG Valid prediction for GeneMark_model.87447_t Valid prediction for GeneMark_model.87430_t Valid prediction for snap_scaffold_22-snap.797-T1 Couldn't classify 141663, 141840 Sorry, prediction pasa_asmbl_30003.p1 fails validation. (GAT) CA 141663-141840 GT AGG (TGA) AG 141937-142048 GT AGG (CCA) AG 142225-142746 GT CTG (GGT) AG 144761-144877 GT AGG (CCG) AG 145094-145122 GT AGG (GTT) AG 146817-146852 GT AGG (GCC) AG 147000-147120 GT GTG (CTA) AG 147457-147606 GT TGG (TCT) AG 147739-147808 GT AGG (CCT) AG 147940-148050 GT CTG (GAC) AG 148367-148462 GT AGG (AGC) AG 149451-149585 GT GGG (AAA) AG 149717-149855 GT AGG (AGA) AG 150055-150206 GT AGG (ATT) AG 150294-150419 GT AGG (GGT) AG 150520-150651 GT AGG (GAG) AG 150765-150832 GT AGG (GTG) AG 151013-151101 GT AGG (ATG) AG 151232-151329 GT ATG (GGC) AG 151503-151590 GT CTG (GGG) AG 151699-151797 GT GGG (GTG) AG 151943-152073 GT AGG (GCT) AG 152222-152434 AG GAA -recovered pasa_asmbl_30003.p1, initial, 151232, 151329 -recovered pasa_asmbl_30003.p1, terminal, 152222, 152434 -recovered pasa_asmbl_30003.p1, internal, 141937, 142048 -recovered pasa_asmbl_30003.p1, internal, 142225, 142746 -recovered pasa_asmbl_30003.p1, internal, 144761, 144877 -recovered pasa_asmbl_30003.p1, internal, 145094, 145122 -recovered pasa_asmbl_30003.p1, internal, 146817, 146852 -recovered pasa_asmbl_30003.p1, internal, 147000, 147120 -recovered pasa_asmbl_30003.p1, internal, 147457, 147606 -recovered pasa_asmbl_30003.p1, internal, 147739, 147808 -recovered pasa_asmbl_30003.p1, internal, 147940, 148050 -recovered pasa_asmbl_30003.p1, internal, 148367, 148462 -recovered pasa_asmbl_30003.p1, internal, 149451, 149585 -recovered pasa_asmbl_30003.p1, internal, 149717, 149855 -recovered pasa_asmbl_30003.p1, internal, 150055, 150206 -recovered pasa_asmbl_30003.p1, internal, 150294, 150419 -recovered pasa_asmbl_30003.p1, internal, 150520, 150651 -recovered pasa_asmbl_30003.p1, internal, 150765, 150832 -recovered pasa_asmbl_30003.p1, internal, 151013, 151101 -recovered pasa_asmbl_30003.p1, internal, 151232, 151329 -recovered pasa_asmbl_30003.p1, internal, 151503, 151590 -recovered pasa_asmbl_30003.p1, internal, 151699, 151797 -recovered pasa_asmbl_30003.p1, internal, 151943, 152073 Valid prediction for GlimmerHMM_glimmerT_50546-T1 Valid prediction for HiQ_model.g33870.t1 Valid prediction for Augustus_model.g33886.t1 Valid prediction for CodingQuarry_transcript_34072-T1 Valid prediction for pasa_asmbl_29974.p1 Valid prediction for snap_scaffold_22-snap.840-T1 Valid prediction for GlimmerHMM_glimmerT_50517-T1 Valid prediction for snap_scaffold_22-snap.818-T1 Valid prediction for GeneMark_model.87420_t Valid prediction for snap_scaffold_22-snap.820-T1 Valid prediction for snap_scaffold_22-snap.806-T1 Valid prediction for GeneMark_model.87415_t Valid prediction for GeneMark_model.87418_t Valid prediction for pasa_asmbl_30029.p1 Valid prediction for GeneMark_model.87426_t Couldn't classify 20851, 21074 Couldn't classify 21494, 21535 Sorry, prediction pasa_asmbl_30025.p1 fails validation. (AAT) TT 20851-21074 GT GGG (GCC) AG 21247-21409 GT AGG (GAC) AG 21494-21535 GA CAG -recovered pasa_asmbl_30025.p1, internal, 21247, 21409 Valid prediction for HiQ_model.g33862.t1 Valid prediction for GeneMark_model.87450_t Valid prediction for GlimmerHMM_glimmerT_50515-T1 Valid prediction for CodingQuarry_transcript_34076-T1 Valid prediction for CodingQuarry_transcript_34077-T1 Valid prediction for HiQ_model.g33873.t1 Couldn't classify 190820, 190877 Sorry, prediction pasa_asmbl_29981.p1 fails validation. (TTC) CC 190820-190877 GT AGG (TGC) AG 191628-191846 GT AGG (CTA) AG 191989-192234 GT AGG (ATG) AG 193888-193947 GT TGG (GAA) AG 194065-194189 GT GAG -recovered pasa_asmbl_29981.p1, initial, 193888, 193947 -recovered pasa_asmbl_29981.p1, terminal, 194065, 194189 -recovered pasa_asmbl_29981.p1, internal, 191628, 191846 -recovered pasa_asmbl_29981.p1, internal, 191989, 192234 -recovered pasa_asmbl_29981.p1, internal, 193888, 193947 -recovered pasa_asmbl_29981.p1, internal, 194065, 194189 Valid prediction for snap_scaffold_22-snap.819-T1 Valid prediction for snap_scaffold_22-snap.822-T1 Valid prediction for GeneMark_model.87434_t Valid prediction for Augustus_model.g33890.t1 Valid prediction for GlimmerHMM_glimmerT_50545-T1 Valid prediction for snap_scaffold_22-snap.803-T1 Valid prediction for GeneMark_model.87449_t Valid prediction for GeneMark_model.87422_t Couldn't classify 216693, 216906 Couldn't classify 220813, 221155 Sorry, prediction pasa_asmbl_29975.p1 fails validation. (CTG) GA 216693-216906 GT AGG (CAT) AG 217062-217217 GT ACG (GAG) AG 217371-217697 GT ATG (TTG) AG 217797-217953 GT AGG (GCA) AG 218140-218237 GT AGG (AAC) AG 218397-218507 GT AGG (GGG) AG 218604-218684 GT AGG (TTG) AG 218952-219044 GT GGG (GGG) AG 219162-219283 GT TGG (TTC) AG 219428-219537 GT ATG (GTT) AG 219828-219987 GT TGG (TGG) AG 220159-220292 GT CTG (ATA) AG 220813-221155 CT GGC -recovered pasa_asmbl_29975.p1, internal, 217062, 217217 -recovered pasa_asmbl_29975.p1, internal, 217371, 217697 -recovered pasa_asmbl_29975.p1, internal, 217797, 217953 -recovered pasa_asmbl_29975.p1, internal, 218140, 218237 -recovered pasa_asmbl_29975.p1, internal, 218397, 218507 -recovered pasa_asmbl_29975.p1, internal, 218604, 218684 -recovered pasa_asmbl_29975.p1, internal, 218952, 219044 -recovered pasa_asmbl_29975.p1, internal, 219162, 219283 -recovered pasa_asmbl_29975.p1, internal, 219428, 219537 -recovered pasa_asmbl_29975.p1, internal, 219828, 219987 -recovered pasa_asmbl_29975.p1, internal, 220159, 220292 Valid prediction for GeneMark_model.87443_t Valid prediction for CodingQuarry_transcript_34073-T1 Valid prediction for GeneMark_model.87431_t Valid prediction for snap_scaffold_22-snap.809-T1 Valid prediction for GlimmerHMM_glimmerT_50528-T1 Couldn't classify 164024, 164103 Sorry, prediction pasa_asmbl_29997.p1 fails validation. (GAG) CT 164024-164103 GT AGG (AGG) AG 164659-164722 GT AGG (GAC) AG 164855-164972 GT AGG (GTG) AG 165355-165457 GT CGG (GGC) AG 166016-166115 GT TGG (TTC) AG 166281-166469 GT TTG (TTG) AG 166731-166805 GT AGG (AAA) AG 166932-166990 GT TAG (CAC) AG 167319-167419 GT CAG (CCG) AG 167634-167773 GT CTG (GAG) AG 167863-168091 GT GTG (GTA) AG 168326-168415 GT GGG (CCG) AG 168528-168646 GT GCG (GCA) AG 169064-169206 GT AGG (AGC) AG 169349-169496 GG GAG -recovered pasa_asmbl_29997.p1, terminal, 169349, 169496 -recovered pasa_asmbl_29997.p1, internal, 164659, 164722 -recovered pasa_asmbl_29997.p1, internal, 164855, 164972 -recovered pasa_asmbl_29997.p1, internal, 165355, 165457 -recovered pasa_asmbl_29997.p1, internal, 166016, 166115 -recovered pasa_asmbl_29997.p1, internal, 166281, 166469 -recovered pasa_asmbl_29997.p1, internal, 166731, 166805 -recovered pasa_asmbl_29997.p1, internal, 166932, 166990 -recovered pasa_asmbl_29997.p1, internal, 167319, 167419 -recovered pasa_asmbl_29997.p1, internal, 167634, 167773 -recovered pasa_asmbl_29997.p1, internal, 167863, 168091 -recovered pasa_asmbl_29997.p1, internal, 168326, 168415 -recovered pasa_asmbl_29997.p1, internal, 168528, 168646 -recovered pasa_asmbl_29997.p1, internal, 169064, 169206 Valid prediction for GlimmerHMM_glimmerT_50527-T1 Valid prediction for snap_scaffold_22-snap.805-T1 Valid prediction for snap_scaffold_22-snap.842-T1 Valid prediction for snap_scaffold_22-snap.811-T1 Valid prediction for GeneMark_model.87424_t Valid prediction for Augustus_model.g33866.t1 Valid prediction for CodingQuarry_transcript_34085-T1 Valid prediction for CodingQuarry_transcript_34087-T1 Valid prediction for GeneMark_model.87414_t Valid prediction for snap_scaffold_22-snap.795-T1 Valid prediction for GeneMark_model.87428_t Valid prediction for snap_scaffold_22-snap.804-T1 Valid prediction for snap_scaffold_22-snap.807-T1 Valid prediction for pasa_asmbl_30006.p1 Valid prediction for Augustus_model.g33871.t1 Valid prediction for GlimmerHMM_glimmerT_50526-T1 Valid prediction for snap_scaffold_22-snap.825-T1 Valid prediction for CodingQuarry_transcript_34074-T1 Valid prediction for snap_scaffold_22-snap.815-T1 Valid prediction for CodingQuarry_transcript_34070-T1 Valid prediction for snap_scaffold_22-snap.824-T1 Valid prediction for Augustus_model.g33875.t1 Valid prediction for snap_scaffold_22-snap.837-T1 Valid prediction for snap_scaffold_22-snap.800-T1 Couldn't classify 176312, 176386 Sorry, prediction pasa_asmbl_29994.p1 fails validation. (ATG) GC 175278-175424 GT AGG (AGT) AG 175512-175598 GT AGG (GCT) AG 175717-175867 GT AGG (TGA) AG 175977-176027 GT TGG (TCC) AG 176121-176215 GT AGG (GTG) AG 176312-176386 GT GGG -recovered pasa_asmbl_29994.p1, initial, 175278, 175424 -recovered pasa_asmbl_29994.p1, internal, 175512, 175598 -recovered pasa_asmbl_29994.p1, internal, 175717, 175867 -recovered pasa_asmbl_29994.p1, internal, 175977, 176027 -recovered pasa_asmbl_29994.p1, internal, 176121, 176215 -recovered pasa_asmbl_29994.p1, internal, 176312, 176386 Valid prediction for snap_scaffold_22-snap.814-T1 Valid prediction for pasa_asmbl_29990.p1 Valid prediction for HiQ_model.g33863.t1 Valid prediction for Augustus_model.g33869.t1 Valid prediction for HiQ_model.g33889.t1 Valid prediction for GlimmerHMM_glimmerT_50519-T1 Valid prediction for Augustus_model.g33887.t1 Valid prediction for Augustus_model.g33868.t1 Couldn't classify 176481, 176701 Sorry, prediction pasa_asmbl_29993.p1 fails validation. (GTG) AG 176481-176701 GT TGG (GAC) AG 176820-176952 GT AGG (GCT) AG 177074-177202 GT TGG (GTG) AG 177310-177788 GT AGG (GTC) AG 177962-178292 GA GAG -recovered pasa_asmbl_29993.p1, terminal, 177962, 178292 -recovered pasa_asmbl_29993.p1, internal, 176481, 176701 -recovered pasa_asmbl_29993.p1, internal, 176820, 176952 -recovered pasa_asmbl_29993.p1, internal, 177074, 177202 -recovered pasa_asmbl_29993.p1, internal, 177310, 177788 Valid prediction for GlimmerHMM_glimmerT_50530-T1 Valid prediction for GeneMark_model.87432_t Valid prediction for Augustus_model.g33878.t1 Valid prediction for GlimmerHMM_glimmerT_50522-T1 Valid prediction for Augustus_model.g33867.t1 Valid prediction for CodingQuarry_transcript_34071-T1 Valid prediction for pasa_asmbl_30011.p2 Valid prediction for HiQ_model.g33864.t1 Valid prediction for CodingQuarry_transcript_34069-T1 Valid prediction for snap_scaffold_22-snap.816-T1 Valid prediction for GlimmerHMM_glimmerT_50547-T1 Valid prediction for GeneMark_model.87419_t Couldn't classify 102172, 102528 Sorry, prediction pasa_asmbl_30016.p1 fails validation. (GAT) TG 102172-102528 CT CTC Valid prediction for GlimmerHMM_glimmerT_50540-T1 Valid prediction for snap_scaffold_22-snap.838-T1 Valid prediction for GeneMark_model.87446_t Valid prediction for GlimmerHMM_glimmerT_50531-T1 Valid prediction for GeneMark_model.87452_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15312, rend_intergenic: 7923 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 22761, rend_intergenic: 15507 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 35851, rend_intergenic: 32884 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 84157, rend_intergenic: 80327 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86082, rend_intergenic: 84376 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 87417, rend_intergenic: 86477 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 141895, rend_intergenic: 137497 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 244197, rend_intergenic: 235473 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 245883 -exon list size: 808 building trellis 0.1 0.2 0.4 0.5 0.6 0.7 0.9 1.0 1.1 1.2 1.4 1.5 1.6 1.7 1.9 2.0 2.1 2.2 2.3 2.5 2.6 2.7 2.8 3.0 3.1 3.2 3.3 3.5 3.6 3.7 3.8 4.0 4.1 4.2 4.3 4.4 4.6 4.7 4.8 4.9 5.1 5.2 5.3 5.4 5.6 5.7 5.8 5.9 6.0 6.2 6.3 6.4 6.5 6.7 6.8 6.9 7.0 7.2 7.3 7.4 7.5 7.7 7.8 7.9 8.0 8.1 8.3 8.4 8.5 8.6 8.8 8.9 9.0 9.1 9.3 9.4 9.5 9.6 9.8 9.9 10.0 10.1 10.2 10.4 10.5 10.6 10.7 10.9 11.0 11.1 11.2 11.4 11.5 11.6 11.7 11.9 12.0 12.1 12.2 12.3 12.5 12.6 12.7 12.8 13.0 13.1 13.2 13.3 13.5 13.6 13.7 13.8 14.0 14.1 14.2 14.3 14.4 14.6 14.7 14.8 14.9 15.1 15.2 15.3 15.4 15.6 15.7 15.8 15.9 16.0 16.2 16.3 16.4 16.5 16.7 16.8 16.9 17.0 17.2 17.3 17.4 17.5 17.7 17.8 17.9 18.0 18.1 18.3 18.4 18.5 18.6 18.8 18.9 19.0 19.1 19.3 19.4 19.5 19.6 19.8 19.9 20.0 20.1 20.2 20.4 20.5 20.6 20.7 20.9 21.0 21.1 21.2 21.4 21.5 21.6 21.7 21.9 22.0 22.1 22.2 22.3 22.5 22.6 22.7 22.8 23.0 23.1 23.2 23.3 23.5 23.6 23.7 23.8 24.0 24.1 24.2 24.3 24.4 24.6 24.7 24.8 24.9 25.1 25.2 25.3 25.4 25.6 25.7 25.8 25.9 26.0 26.2 26.3 26.4 26.5 26.7 26.8 26.9 27.0 27.2 27.3 27.4 27.5 27.7 27.8 27.9 28.0 28.1 28.3 28.4 28.5 28.6 28.8 28.9 29.0 29.1 29.3 29.4 29.5 29.6 29.8 29.9 30.0 30.1 30.2 30.4 30.5 30.6 30.7 30.9 31.0 31.1 31.2 31.4 31.5 31.6 31.7 31.9 32.0 32.1 32.2 32.3 32.5 32.6 32.7 32.8 33.0 33.1 33.2 33.3 33.5 33.6 33.7 33.8 34.0 34.1 34.2 34.3 34.4 34.6 34.7 34.8 34.9 35.1 35.2 35.3 35.4 35.6 35.7 35.8 35.9 36.0 36.2 36.3 36.4 36.5 36.7 36.8 36.9 37.0 37.2 37.3 37.4 37.5 37.7 37.8 37.9 38.0 38.1 38.3 38.4 38.5 38.6 38.8 38.9 39.0 39.1 39.3 39.4 39.5 39.6 39.8 39.9 40.0 40.1 40.2 40.4 40.5 40.6 40.7 40.9 41.0 41.1 41.2 41.4 41.5 41.6 41.7 41.9 42.0 42.1 42.2 42.3 42.5 42.6 42.7 42.8 43.0 43.1 43.2 43.3 43.5 43.6 43.7 43.8 44.0 44.1 44.2 44.3 44.4 44.6 44.7 44.8 44.9 45.1 45.2 45.3 45.4 45.6 45.7 45.8 45.9 46.0 46.2 46.3 46.4 46.5 46.7 46.8 46.9 47.0 47.2 47.3 47.4 47.5 47.7 47.8 47.9 48.0 48.1 48.3 48.4 48.5 48.6 48.8 48.9 49.0 49.1 49.3 49.4 49.5 49.6 49.8 49.9 50.0 50.1 50.2 50.4 50.5 50.6 50.7 50.9 51.0 51.1 51.2 51.4 51.5 51.6 51.7 51.9 52.0 52.1 52.2 52.3 52.5 52.6 52.7 52.8 53.0 53.1 53.2 53.3 53.5 53.6 53.7 53.8 54.0 54.1 54.2 54.3 54.4 54.6 54.7 54.8 54.9 55.1 55.2 55.3 55.4 55.6 55.7 55.8 55.9 56.0 56.2 56.3 56.4 56.5 56.7 56.8 56.9 57.0 57.2 57.3 57.4 57.5 57.7 57.8 57.9 58.0 58.1 58.3 58.4 58.5 58.6 58.8 58.9 59.0 59.1 59.3 59.4 59.5 59.6 59.8 59.9 60.0 60.1 60.2 60.4 60.5 60.6 60.7 60.9 61.0 61.1 61.2 61.4 61.5 61.6 61.7 61.9 62.0 62.1 62.2 62.3 62.5 62.6 62.7 62.8 63.0 63.1 63.2 63.3 63.5 63.6 63.7 63.8 64.0 64.1 64.2 64.3 64.4 64.6 64.7 64.8 64.9 65.1 65.2 65.3 65.4 65.6 65.7 65.8 65.9 66.0 66.2 66.3 66.4 66.5 66.7 66.8 66.9 67.0 67.2 67.3 67.4 67.5 67.7 67.8 67.9 68.0 68.1 68.3 68.4 68.5 68.6 68.8 68.9 69.0 69.1 69.3 69.4 69.5 69.6 69.8 69.9 70.0 70.1 70.2 70.4 70.5 70.6 70.7 70.9 71.0 71.1 71.2 71.4 71.5 71.6 71.7 71.9 72.0 72.1 72.2 72.3 72.5 72.6 72.7 72.8 73.0 73.1 73.2 73.3 73.5 73.6 73.7 73.8 74.0 74.1 74.2 74.3 74.4 74.6 74.7 74.8 74.9 75.1 75.2 75.3 75.4 75.6 75.7 75.8 75.9 76.0 76.2 76.3 76.4 76.5 76.7 76.8 76.9 77.0 77.2 77.3 77.4 77.5 77.7 77.8 77.9 78.0 78.1 78.3 78.4 78.5 78.6 78.8 78.9 79.0 79.1 79.3 79.4 79.5 79.6 79.8 79.9 80.0 80.1 80.2 80.4 80.5 80.6 80.7 80.9 81.0 81.1 81.2 81.4 81.5 81.6 81.7 81.9 82.0 82.1 82.2 82.3 82.5 82.6 82.7 82.8 83.0 83.1 83.2 83.3 83.5 83.6 83.7 83.8 84.0 84.1 84.2 84.3 84.4 84.6 84.7 84.8 84.9 85.1 85.2 85.3 85.4 85.6 85.7 85.8 85.9 86.0 86.2 86.3 86.4 86.5 86.7 86.8 86.9 87.0 87.2 87.3 87.4 87.5 87.7 87.8 87.9 88.0 88.1 88.3 88.4 88.5 88.6 88.8 88.9 89.0 89.1 89.3 89.4 89.5 89.6 89.8 89.9 90.0 90.1 90.2 90.4 90.5 90.6 90.7 90.9 91.0 91.1 91.2 91.4 91.5 91.6 91.7 91.9 92.0 92.1 92.2 92.3 92.5 92.6 92.7 92.8 93.0 93.1 93.2 93.3 93.5 93.6 93.7 93.8 94.0 94.1 94.2 94.3 94.4 94.6 94.7 94.8 94.9 95.1 95.2 95.3 95.4 95.6 95.7 95.8 95.9 96.0 96.2 96.3 96.4 96.5 96.7 96.8 96.9 97.0 97.2 97.3 97.4 97.5 97.7 97.8 97.9 98.0 98.1 98.3 98.4 98.5 98.6 98.8 98.9 99.0 99.1 99.3 99.4 99.5 99.6 99.8 99.9 -found 36 predictions from path traversal Error with prediction: snap lend_intergenic: 15312, rend_intergenic: 7923 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 22761, rend_intergenic: 15507 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 35851, rend_intergenic: 32884 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 84157, rend_intergenic: 80327 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86082, rend_intergenic: 84376 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 87417, rend_intergenic: 86477 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 141895, rend_intergenic: 137497 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 244197, rend_intergenic: 235473 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 33 predictions persist after filtering for low support