-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_3308137-3486612

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.87188_t
Valid prediction for GeneMark_model.87168_t
Valid prediction for GeneMark_model.87186_t
Valid prediction for snap_scaffold_22-snap.599-T1
Valid prediction for Augustus_model.g33794.t1
Valid prediction for GlimmerHMM_glimmerT_50397-T1
Valid prediction for GeneMark_model.87192_t
Valid prediction for GeneMark_model.87174_t
Valid prediction for GeneMark_model.87170_t
Valid prediction for snap_scaffold_22-snap.576-T1
Valid prediction for GeneMark_model.87157_t
Valid prediction for snap_scaffold_22-snap.579-T1
Valid prediction for Augustus_model.g33791.t1
Valid prediction for GeneMark_model.87158_t
Valid prediction for snap_scaffold_22-snap.591-T1
Valid prediction for GeneMark_model.87199_t
Valid prediction for snap_scaffold_22-snap.605-T1
Valid prediction for GeneMark_model.87154_t
Valid prediction for snap_scaffold_22-snap.613-T1
Valid prediction for GeneMark_model.87184_t
Valid prediction for GlimmerHMM_glimmerT_50378-T1
Valid prediction for GlimmerHMM_glimmerT_50398-T1
Valid prediction for snap_scaffold_22-snap.610-T1
Valid prediction for GeneMark_model.87209_t
Valid prediction for snap_scaffold_22-snap.607-T1
Valid prediction for GlimmerHMM_glimmerT_50389-T1
Valid prediction for snap_scaffold_22-snap.592-T1
Valid prediction for snap_scaffold_22-snap.611-T1
Valid prediction for GeneMark_model.87213_t
Valid prediction for Augustus_model.g33786.t1
Valid prediction for snap_scaffold_22-snap.589-T1
Valid prediction for snap_scaffold_22-snap.574-T1
Valid prediction for GlimmerHMM_glimmerT_50374-T1
Valid prediction for snap_scaffold_22-snap.586-T1
Valid prediction for snap_scaffold_22-snap.609-T1
Valid prediction for GeneMark_model.87196_t
Valid prediction for GeneMark_model.87195_t
Valid prediction for GeneMark_model.87190_t
Valid prediction for snap_scaffold_22-snap.616-T1
Valid prediction for GlimmerHMM_glimmerT_50395-T1
Valid prediction for GeneMark_model.87176_t
Valid prediction for GlimmerHMM_glimmerT_50403-T1
Valid prediction for GeneMark_model.87202_t
Valid prediction for snap_scaffold_22-snap.584-T1
Valid prediction for GeneMark_model.87216_t
Valid prediction for snap_scaffold_22-snap.580-T1
Valid prediction for GlimmerHMM_glimmerT_50375-T1
Valid prediction for snap_scaffold_22-snap.578-T1
Valid prediction for Augustus_model.g33785.t1
Valid prediction for snap_scaffold_22-snap.594-T1
Valid prediction for GlimmerHMM_glimmerT_50381-T1
Valid prediction for GeneMark_model.87172_t
Valid prediction for Augustus_model.g33796.t1
Valid prediction for GlimmerHMM_glimmerT_50377-T1
Valid prediction for Augustus_model.g33790.t1
Valid prediction for GlimmerHMM_glimmerT_50390-T1
Valid prediction for snap_scaffold_22-snap.577-T1
Valid prediction for Augustus_model.g33795.t1
Valid prediction for GeneMark_model.87185_t
Valid prediction for snap_scaffold_22-snap.602-T1
Valid prediction for GlimmerHMM_glimmerT_50386-T1
Valid prediction for GeneMark_model.87178_t
Valid prediction for Augustus_model.g33787.t1
Valid prediction for GlimmerHMM_glimmerT_50406-T1
Valid prediction for GlimmerHMM_glimmerT_50405-T1
Valid prediction for GeneMark_model.87206_t
Valid prediction for GlimmerHMM_glimmerT_50388-T1
Valid prediction for Augustus_model.g33792.t1
Valid prediction for GlimmerHMM_glimmerT_50387-T1
Valid prediction for GeneMark_model.87160_t
Valid prediction for GeneMark_model.87166_t
Valid prediction for GeneMark_model.87182_t
Valid prediction for GlimmerHMM_glimmerT_50404-T1
Valid prediction for GeneMark_model.87163_t
Valid prediction for GeneMark_model.87210_t
Valid prediction for GeneMark_model.87208_t
Valid prediction for GeneMark_model.87181_t
Valid prediction for GeneMark_model.87203_t
Valid prediction for GeneMark_model.87214_t
Valid prediction for snap_scaffold_22-snap.608-T1
Valid prediction for GlimmerHMM_glimmerT_50401-T1
Valid prediction for GeneMark_model.87197_t
Valid prediction for GlimmerHMM_glimmerT_50379-T1
Valid prediction for Augustus_model.g33779.t1
Valid prediction for GeneMark_model.87156_t
Valid prediction for snap_scaffold_22-snap.597-T1
Valid prediction for GlimmerHMM_glimmerT_50402-T1
Valid prediction for GeneMark_model.87193_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_22-snap.583-T1
Valid prediction for snap_scaffold_22-snap.581-T1
Valid prediction for snap_scaffold_22-snap.585-T1
Valid prediction for Augustus_model.g33789.t1
Valid prediction for GlimmerHMM_glimmerT_50385-T1
Valid prediction for snap_scaffold_22-snap.590-T1
Valid prediction for GeneMark_model.87187_t
Valid prediction for GlimmerHMM_glimmerT_50380-T1
Valid prediction for snap_scaffold_22-snap.601-T1
Valid prediction for snap_scaffold_22-snap.575-T1
Valid prediction for GeneMark_model.87212_t
Valid prediction for GeneMark_model.87175_t
Valid prediction for snap_scaffold_22-snap.617-T1
Valid prediction for GeneMark_model.87205_t
Valid prediction for GlimmerHMM_glimmerT_50382-T1
Valid prediction for GlimmerHMM_glimmerT_50391-T1
Valid prediction for GeneMark_model.87167_t
Valid prediction for snap_scaffold_22-snap.598-T1
Valid prediction for GeneMark_model.87159_t
Valid prediction for GeneMark_model.87155_t
Valid prediction for snap_scaffold_22-snap.618-T1
Valid prediction for Augustus_model.g33788.t1
Valid prediction for snap_scaffold_22-snap.603-T1
Valid prediction for GeneMark_model.87211_t
Valid prediction for Augustus_model.g33780.t1
Valid prediction for snap_scaffold_22-snap.593-T1
Valid prediction for GeneMark_model.87171_t
Valid prediction for GeneMark_model.87164_t
Valid prediction for GeneMark_model.87204_t
Valid prediction for GlimmerHMM_glimmerT_50400-T1
Valid prediction for GlimmerHMM_glimmerT_50396-T1
Valid prediction for Augustus_model.g33782.t1
Valid prediction for GlimmerHMM_glimmerT_50384-T1
Valid prediction for GeneMark_model.87162_t
Valid prediction for snap_scaffold_22-snap.606-T1
Valid prediction for GlimmerHMM_glimmerT_50393-T1
Valid prediction for snap_scaffold_22-snap.614-T1
Valid prediction for snap_scaffold_22-snap.596-T1
Valid prediction for GeneMark_model.87183_t
Valid prediction for snap_scaffold_22-snap.587-T1
Valid prediction for snap_scaffold_22-snap.615-T1
Valid prediction for GeneMark_model.87169_t
Valid prediction for snap_scaffold_22-snap.604-T1
Valid prediction for GeneMark_model.87165_t
Valid prediction for GeneMark_model.87191_t
Valid prediction for GlimmerHMM_glimmerT_50383-T1
Valid prediction for Augustus_model.g33793.t1
Valid prediction for GeneMark_model.87161_t
Valid prediction for GeneMark_model.87207_t
Valid prediction for GeneMark_model.87200_t
Valid prediction for GlimmerHMM_glimmerT_50399-T1
Valid prediction for GeneMark_model.87177_t
Valid prediction for snap_scaffold_22-snap.595-T1
Valid prediction for GeneMark_model.87179_t
Valid prediction for GeneMark_model.87201_t
Valid prediction for Augustus_model.g33784.t1
Valid prediction for GeneMark_model.87173_t
Valid prediction for snap_scaffold_22-snap.600-T1
Valid prediction for Augustus_model.g33781.t1
Valid prediction for snap_scaffold_22-snap.612-T1
Valid prediction for GeneMark_model.87198_t
Valid prediction for Augustus_model.g33783.t1
Valid prediction for GlimmerHMM_glimmerT_50376-T1
Valid prediction for GlimmerHMM_glimmerT_50394-T1
Valid prediction for snap_scaffold_22-snap.619-T1
Valid prediction for GeneMark_model.87180_t
Valid prediction for GeneMark_model.87194_t
Valid prediction for GlimmerHMM_glimmerT_50392-T1
Valid prediction for snap_scaffold_22-snap.588-T1
Valid prediction for GeneMark_model.87215_t
Valid prediction for snap_scaffold_22-snap.582-T1
Valid prediction for GeneMark_model.87189_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12380, rend_intergenic: 9770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25062, rend_intergenic: 22476  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35364, rend_intergenic: 34396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37674, rend_intergenic: 37546  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40563, rend_intergenic: 40144  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51094, rend_intergenic: 40911  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57990, rend_intergenic: 51183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61876, rend_intergenic: 58932  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73274, rend_intergenic: 64770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82911, rend_intergenic: 74445  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88340, rend_intergenic: 85467  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99993, rend_intergenic: 96238  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116738, rend_intergenic: 113082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122005, rend_intergenic: 120474  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124741, rend_intergenic: 122726  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139284, rend_intergenic: 137872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146133, rend_intergenic: 139737  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161295, rend_intergenic: 157638  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 178476
-exon list size: 800


building trellis

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88.7    
88.8    
88.9    
89.0    
89.2    
89.3    
89.4    
89.5    
89.7    
89.8    
89.9    
90.0    
90.1    
90.3    
90.4    
90.5    
90.6    
90.8    
90.9    
91.0    
91.1    
91.3    
91.4    
91.5    
91.6    
91.8    
91.9    
92.0    
92.1    
92.3    
92.4    
92.5    
92.6    
92.8    
92.9    
93.0    
93.1    
93.3    
93.4    
93.5    
93.6    
93.8    
93.9    
94.0    
94.1    
94.3    
94.4    
94.5    
94.6    
94.8    
94.9    
95.0    
95.1    
95.3    
95.4    
95.5    
95.6    
95.8    
95.9    
96.0    
96.1    
96.3    
96.4    
96.5    
96.6    
96.8    
96.9    
97.0    
97.1    
97.3    
97.4    
97.5    
97.6    
97.8    
97.9    
98.0    
98.1    
98.3    
98.4    
98.5    
98.6    
98.8    
98.9    
99.0    
99.1    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 46 predictions from path traversal
Error with prediction: snap lend_intergenic: 12380, rend_intergenic: 9770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25062, rend_intergenic: 22476  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35364, rend_intergenic: 34396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37674, rend_intergenic: 37546  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40563, rend_intergenic: 40144  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51094, rend_intergenic: 40911  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57990, rend_intergenic: 51183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61876, rend_intergenic: 58932  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73274, rend_intergenic: 64770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82911, rend_intergenic: 74445  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88340, rend_intergenic: 85467  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99993, rend_intergenic: 96238  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116738, rend_intergenic: 113082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122005, rend_intergenic: 120474  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124741, rend_intergenic: 122726  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139284, rend_intergenic: 137872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146133, rend_intergenic: 139737  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161295, rend_intergenic: 157638  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 167592 - 178476
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 167592 - 178332
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support