-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_3059658-3204388

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.87111_t
Valid prediction for Augustus_model.g33762.t1
Valid prediction for GeneMark_model.87099_t
Valid prediction for snap_scaffold_22-snap.539-T1
Valid prediction for GlimmerHMM_glimmerT_50333-T1
Valid prediction for snap_scaffold_22-snap.536-T1
Valid prediction for GeneMark_model.87114_t
Valid prediction for GlimmerHMM_glimmerT_50346-T1
Valid prediction for snap_scaffold_22-snap.521-T1
Valid prediction for snap_scaffold_22-snap.519-T1
Valid prediction for GeneMark_model.87110_t
Valid prediction for Augustus_model.g33766.t1
Valid prediction for GeneMark_model.87107_t
Valid prediction for snap_scaffold_22-snap.523-T1
Valid prediction for GeneMark_model.87105_t
Valid prediction for Augustus_model.g33768.t1
Valid prediction for Augustus_model.g33757.t1
Valid prediction for GlimmerHMM_glimmerT_50330-T1
Valid prediction for GlimmerHMM_glimmerT_50329-T1
Valid prediction for snap_scaffold_22-snap.543-T1
Valid prediction for snap_scaffold_22-snap.544-T1
Valid prediction for GeneMark_model.87102_t
Valid prediction for GlimmerHMM_glimmerT_50342-T1
Valid prediction for GeneMark_model.87086_t
Valid prediction for snap_scaffold_22-snap.515-T1
Valid prediction for GlimmerHMM_glimmerT_50348-T1
Valid prediction for Augustus_model.g33755.t1
Valid prediction for snap_scaffold_22-snap.532-T1
Valid prediction for snap_scaffold_22-snap.513-T1
Valid prediction for GeneMark_model.87097_t
Valid prediction for GeneMark_model.87116_t
Valid prediction for Augustus_model.g33765.t1
Valid prediction for GeneMark_model.87089_t
Valid prediction for snap_scaffold_22-snap.547-T1
Valid prediction for GeneMark_model.87094_t
Valid prediction for GeneMark_model.87091_t
Valid prediction for GeneMark_model.87096_t
Valid prediction for GeneMark_model.87088_t
Valid prediction for snap_scaffold_22-snap.526-T1
Valid prediction for snap_scaffold_22-snap.533-T1
Valid prediction for GlimmerHMM_glimmerT_50332-T1
Valid prediction for GlimmerHMM_glimmerT_50327-T1
Valid prediction for snap_scaffold_22-snap.516-T1
Valid prediction for GlimmerHMM_glimmerT_50347-T1
Valid prediction for GeneMark_model.87113_t
Valid prediction for Augustus_model.g33761.t1
Valid prediction for GeneMark_model.87100_t
Valid prediction for GlimmerHMM_glimmerT_50340-T1
Valid prediction for snap_scaffold_22-snap.538-T1
Valid prediction for snap_scaffold_22-snap.514-T1
Valid prediction for GeneMark_model.87095_t
Valid prediction for GlimmerHMM_glimmerT_50344-T1
Valid prediction for GeneMark_model.87093_t
Valid prediction for snap_scaffold_22-snap.528-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_50338-T1
Valid prediction for snap_scaffold_22-snap.535-T1
Valid prediction for snap_scaffold_22-snap.531-T1
Valid prediction for GlimmerHMM_glimmerT_50339-T1
Valid prediction for GeneMark_model.87098_t
Valid prediction for Augustus_model.g33756.t1
Valid prediction for GeneMark_model.87090_t
Valid prediction for snap_scaffold_22-snap.517-T1
Valid prediction for snap_scaffold_22-snap.546-T1
Valid prediction for snap_scaffold_22-snap.520-T1
Valid prediction for snap_scaffold_22-snap.545-T1
Valid prediction for GeneMark_model.87108_t
Valid prediction for snap_scaffold_22-snap.529-T1
Valid prediction for snap_scaffold_22-snap.530-T1
Valid prediction for GlimmerHMM_glimmerT_50337-T1
Valid prediction for Augustus_model.g33763.t1
Valid prediction for snap_scaffold_22-snap.537-T1
Valid prediction for snap_scaffold_22-snap.525-T1
Valid prediction for snap_scaffold_22-snap.540-T1
Valid prediction for Augustus_model.g33754.t1
Valid prediction for snap_scaffold_22-snap.534-T1
Valid prediction for Augustus_model.g33759.t1
Valid prediction for GeneMark_model.87103_t
Valid prediction for GlimmerHMM_glimmerT_50328-T1
Valid prediction for GlimmerHMM_glimmerT_50331-T1
Valid prediction for GeneMark_model.87112_t
Valid prediction for GlimmerHMM_glimmerT_50341-T1
Valid prediction for Augustus_model.g33767.t1
Valid prediction for snap_scaffold_22-snap.524-T1
Valid prediction for GlimmerHMM_glimmerT_50349-T1
Valid prediction for Augustus_model.g33760.t1
Valid prediction for snap_scaffold_22-snap.541-T1
Valid prediction for snap_scaffold_22-snap.522-T1
Valid prediction for GlimmerHMM_glimmerT_50335-T1
Valid prediction for GeneMark_model.87104_t
Valid prediction for Augustus_model.g33758.t1
Valid prediction for GlimmerHMM_glimmerT_50336-T1
Valid prediction for GlimmerHMM_glimmerT_50345-T1
Valid prediction for GeneMark_model.87109_t
Valid prediction for GeneMark_model.87106_t
Valid prediction for GeneMark_model.87087_t
Valid prediction for snap_scaffold_22-snap.542-T1
Valid prediction for GlimmerHMM_glimmerT_50343-T1
Valid prediction for GeneMark_model.87115_t
Valid prediction for GlimmerHMM_glimmerT_50334-T1
Valid prediction for snap_scaffold_22-snap.527-T1
Valid prediction for Augustus_model.g33764.t1
Valid prediction for snap_scaffold_22-snap.518-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 34995, rend_intergenic: 28815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47219, rend_intergenic: 44265  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93905, rend_intergenic: 91563  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135066, rend_intergenic: 133626  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 144731
-exon list size: 384


building trellis

0.3    
0.5    
0.8    
1.0    
1.3    
1.6    
1.8    
2.1    
2.3    
2.6    
2.8    
3.1    
3.4    
3.6    
3.9    
4.1    
4.4    
4.7    
4.9    
5.2    
5.4    
5.7    
6.0    
6.2    
6.5    
6.7    
7.0    
7.3    
7.5    
7.8    
8.0    
8.3    
8.5    
8.8    
9.1    
9.3    
9.6    
9.8    
10.1    
10.4    
10.6    
10.9    
11.1    
11.4    
11.7    
11.9    
12.2    
12.4    
12.7    
13.0    
13.2    
13.5    
13.7    
14.0    
14.2    
14.5    
14.8    
15.0    
15.3    
15.5    
15.8    
16.1    
16.3    
16.6    
16.8    
17.1    
17.4    
17.6    
17.9    
18.1    
18.4    
18.7    
18.9    
19.2    
19.4    
19.7    
19.9    
20.2    
20.5    
20.7    
21.0    
21.2    
21.5    
21.8    
22.0    
22.3    
22.5    
22.8    
23.1    
23.3    
23.6    
23.8    
24.1    
24.4    
24.6    
24.9    
25.1    
25.4    
25.6    
25.9    
26.2    
26.4    
26.7    
26.9    
27.2    
27.5    
27.7    
28.0    
28.2    
28.5    
28.8    
29.0    
29.3    
29.5    
29.8    
30.1    
30.3    
30.6    
30.8    
31.1    
31.3    
31.6    
31.9    
32.1    
32.4    
32.6    
32.9    
33.2    
33.4    
33.7    
33.9    
34.2    
34.5    
34.7    
35.0    
35.2    
35.5    
35.8    
36.0    
36.3    
36.5    
36.8    
37.0    
37.3    
37.6    
37.8    
38.1    
38.3    
38.6    
38.9    
39.1    
39.4    
39.6    
39.9    
40.2    
40.4    
40.7    
40.9    
41.2    
41.5    
41.7    
42.0    
42.2    
42.5    
42.7    
43.0    
43.3    
43.5    
43.8    
44.0    
44.3    
44.6    
44.8    
45.1    
45.3    
45.6    
45.9    
46.1    
46.4    
46.6    
46.9    
47.2    
47.4    
47.7    
47.9    
48.2    
48.4    
48.7    
49.0    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.0    
51.3    
51.6    
51.8    
52.1    
52.3    
52.6    
52.8    
53.1    
53.4    
53.6    
53.9    
54.1    
54.4    
54.7    
54.9    
55.2    
55.4    
55.7    
56.0    
56.2    
56.5    
56.7    
57.0    
57.3    
57.5    
57.8    
58.0    
58.3    
58.5    
58.8    
59.1    
59.3    
59.6    
59.8    
60.1    
60.4    
60.6    
60.9    
61.1    
61.4    
61.7    
61.9    
62.2    
62.4    
62.7    
63.0    
63.2    
63.5    
63.7    
64.0    
64.2    
64.5    
64.8    
65.0    
65.3    
65.5    
65.8    
66.1    
66.3    
66.6    
66.8    
67.1    
67.4    
67.6    
67.9    
68.1    
68.4    
68.7    
68.9    
69.2    
69.4    
69.7    
69.9    
70.2    
70.5    
70.7    
71.0    
71.2    
71.5    
71.8    
72.0    
72.3    
72.5    
72.8    
73.1    
73.3    
73.6    
73.8    
74.1    
74.4    
74.6    
74.9    
75.1    
75.4    
75.6    
75.9    
76.2    
76.4    
76.7    
76.9    
77.2    
77.5    
77.7    
78.0    
78.2    
78.5    
78.8    
79.0    
79.3    
79.5    
79.8    
80.1    
80.3    
80.6    
80.8    
81.1    
81.3    
81.6    
81.9    
82.1    
82.4    
82.6    
82.9    
83.2    
83.4    
83.7    
83.9    
84.2    
84.5    
84.7    
85.0    
85.2    
85.5    
85.8    
86.0    
86.3    
86.5    
86.8    
87.0    
87.3    
87.6    
87.8    
88.1    
88.3    
88.6    
88.9    
89.1    
89.4    
89.6    
89.9    
90.2    
90.4    
90.7    
90.9    
91.2    
91.5    
91.7    
92.0    
92.2    
92.5    
92.7    
93.0    
93.3    
93.5    
93.8    
94.0    
94.3    
94.6    
94.8    
95.1    
95.3    
95.6    
95.9    
96.1    
96.4    
96.6    
96.9    
97.2    
97.4    
97.7    
97.9    
98.2    
98.4    
98.7    
99.0    
99.2    
99.5    
99.7    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 34995, rend_intergenic: 28815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47219, rend_intergenic: 44265  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93905, rend_intergenic: 91563  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135066, rend_intergenic: 133626  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support