-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_2479793-2633143

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.87009_t
Valid prediction for snap_scaffold_22-snap.414-T1
Valid prediction for Augustus_model.g33727.t1
Valid prediction for GeneMark_model.87017_t
Valid prediction for snap_scaffold_22-snap.444-T1
Valid prediction for snap_scaffold_22-snap.438-T1
Valid prediction for snap_scaffold_22-snap.435-T1
Valid prediction for snap_scaffold_22-snap.425-T1
Valid prediction for GeneMark_model.86987_t
Valid prediction for GeneMark_model.86985_t
Valid prediction for GlimmerHMM_glimmerT_50285-T1
Valid prediction for snap_scaffold_22-snap.422-T1
Valid prediction for GeneMark_model.87008_t
Valid prediction for GlimmerHMM_glimmerT_50277-T1
Valid prediction for snap_scaffold_22-snap.416-T1
Valid prediction for GeneMark_model.86984_t
Valid prediction for GeneMark_model.87012_t
Valid prediction for GlimmerHMM_glimmerT_50276-T1
Valid prediction for GlimmerHMM_glimmerT_50280-T1
Valid prediction for Augustus_model.g33721.t1
Valid prediction for GlimmerHMM_glimmerT_50268-T1
Valid prediction for GlimmerHMM_glimmerT_50282-T1
Valid prediction for GeneMark_model.86982_t
Valid prediction for GeneMark_model.87000_t
Valid prediction for snap_scaffold_22-snap.431-T1
Valid prediction for GeneMark_model.86992_t
Valid prediction for GeneMark_model.87002_t
Valid prediction for GlimmerHMM_glimmerT_50271-T1
Valid prediction for snap_scaffold_22-snap.427-T1
Valid prediction for snap_scaffold_22-snap.430-T1
Valid prediction for Augustus_model.g33720.t1
Valid prediction for Augustus_model.g33725.t1
Valid prediction for GeneMark_model.86998_t
Valid prediction for GlimmerHMM_glimmerT_50275-T1
Valid prediction for GeneMark_model.86996_t
Valid prediction for snap_scaffold_22-snap.413-T1
Valid prediction for snap_scaffold_22-snap.426-T1
Valid prediction for GeneMark_model.86994_t
Valid prediction for snap_scaffold_22-snap.436-T1
Valid prediction for GlimmerHMM_glimmerT_50274-T1
Valid prediction for snap_scaffold_22-snap.442-T1
Valid prediction for snap_scaffold_22-snap.439-T1
Valid prediction for snap_scaffold_22-snap.423-T1
Valid prediction for snap_scaffold_22-snap.437-T1
Valid prediction for GeneMark_model.87011_t
Valid prediction for GeneMark_model.87005_t
Valid prediction for GeneMark_model.87014_t
Valid prediction for snap_scaffold_22-snap.417-T1
Valid prediction for snap_scaffold_22-snap.428-T1
Valid prediction for snap_scaffold_22-snap.424-T1
Valid prediction for GeneMark_model.87022_t
Valid prediction for Augustus_model.g33719.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.86995_t
Valid prediction for GlimmerHMM_glimmerT_50269-T1
Valid prediction for snap_scaffold_22-snap.420-T1
Valid prediction for GeneMark_model.86991_t
Valid prediction for GeneMark_model.87021_t
Valid prediction for Augustus_model.g33723.t1
Valid prediction for GeneMark_model.87019_t
Valid prediction for Augustus_model.g33728.t1
Valid prediction for snap_scaffold_22-snap.419-T1
Valid prediction for GeneMark_model.86989_t
Valid prediction for snap_scaffold_22-snap.443-T1
Valid prediction for Augustus_model.g33718.t1
Valid prediction for GeneMark_model.87015_t
Valid prediction for GeneMark_model.87004_t
Valid prediction for GeneMark_model.87010_t
Valid prediction for snap_scaffold_22-snap.432-T1
Valid prediction for Augustus_model.g33722.t1
Valid prediction for GlimmerHMM_glimmerT_50279-T1
Valid prediction for GlimmerHMM_glimmerT_50272-T1
Valid prediction for GeneMark_model.87020_t
Valid prediction for GeneMark_model.87016_t
Valid prediction for GeneMark_model.86986_t
Valid prediction for GeneMark_model.87007_t
Valid prediction for GlimmerHMM_glimmerT_50267-T1
Valid prediction for GeneMark_model.86997_t
Valid prediction for GlimmerHMM_glimmerT_50284-T1
Valid prediction for GlimmerHMM_glimmerT_50281-T1
Valid prediction for snap_scaffold_22-snap.415-T1
Valid prediction for GlimmerHMM_glimmerT_50283-T1
Valid prediction for GlimmerHMM_glimmerT_50273-T1
Valid prediction for GeneMark_model.87018_t
Valid prediction for snap_scaffold_22-snap.441-T1
Valid prediction for GlimmerHMM_glimmerT_50270-T1
Valid prediction for GeneMark_model.86988_t
Valid prediction for snap_scaffold_22-snap.434-T1
Valid prediction for GlimmerHMM_glimmerT_50278-T1
Valid prediction for snap_scaffold_22-snap.433-T1
Valid prediction for snap_scaffold_22-snap.418-T1
Valid prediction for snap_scaffold_22-snap.445-T1
Valid prediction for snap_scaffold_22-snap.429-T1
Valid prediction for GeneMark_model.87001_t
Valid prediction for GeneMark_model.87003_t
Valid prediction for GeneMark_model.87013_t
Valid prediction for GeneMark_model.86983_t
Valid prediction for snap_scaffold_22-snap.440-T1
Valid prediction for GeneMark_model.86990_t
Valid prediction for Augustus_model.g33724.t1
Valid prediction for GeneMark_model.86999_t
Valid prediction for snap_scaffold_22-snap.412-T1
Valid prediction for snap_scaffold_22-snap.411-T1
Valid prediction for snap_scaffold_22-snap.421-T1
Valid prediction for GeneMark_model.87006_t
Valid prediction for snap_scaffold_22-snap.446-T1
Valid prediction for GeneMark_model.86993_t
Valid prediction for Augustus_model.g33726.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 55759, rend_intergenic: 41504  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99054, rend_intergenic: 97191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106215, rend_intergenic: 103059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136456, rend_intergenic: 130476  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145466, rend_intergenic: 144502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 153351
-exon list size: 456


building trellis

0.2    
0.4    
0.7    
0.9    
1.1    
1.3    
1.5    
1.7    
2.0    
2.2    
2.4    
2.6    
2.8    
3.1    
3.3    
3.5    
3.7    
3.9    
4.1    
4.4    
4.6    
4.8    
5.0    
5.2    
5.5    
5.7    
5.9    
6.1    
6.3    
6.6    
6.8    
7.0    
7.2    
7.4    
7.6    
7.9    
8.1    
8.3    
8.5    
8.7    
9.0    
9.2    
9.4    
9.6    
9.8    
10.0    
10.3    
10.5    
10.7    
10.9    
11.1    
11.4    
11.6    
11.8    
12.0    
12.2    
12.4    
12.7    
12.9    
13.1    
13.3    
13.5    
13.8    
14.0    
14.2    
14.4    
14.6    
14.8    
15.1    
15.3    
15.5    
15.7    
15.9    
16.2    
16.4    
16.6    
16.8    
17.0    
17.2    
17.5    
17.7    
17.9    
18.1    
18.3    
18.6    
18.8    
19.0    
19.2    
19.4    
19.7    
19.9    
20.1    
20.3    
20.5    
20.7    
21.0    
21.2    
21.4    
21.6    
21.8    
22.1    
22.3    
22.5    
22.7    
22.9    
23.1    
23.4    
23.6    
23.8    
24.0    
24.2    
24.5    
24.7    
24.9    
25.1    
25.3    
25.5    
25.8    
26.0    
26.2    
26.4    
26.6    
26.9    
27.1    
27.3    
27.5    
27.7    
27.9    
28.2    
28.4    
28.6    
28.8    
29.0    
29.3    
29.5    
29.7    
29.9    
30.1    
30.3    
30.6    
30.8    
31.0    
31.2    
31.4    
31.7    
31.9    
32.1    
32.3    
32.5    
32.8    
33.0    
33.2    
33.4    
33.6    
33.8    
34.1    
34.3    
34.5    
34.7    
34.9    
35.2    
35.4    
35.6    
35.8    
36.0    
36.2    
36.5    
36.7    
36.9    
37.1    
37.3    
37.6    
37.8    
38.0    
38.2    
38.4    
38.6    
38.9    
39.1    
39.3    
39.5    
39.7    
40.0    
40.2    
40.4    
40.6    
40.8    
41.0    
41.3    
41.5    
41.7    
41.9    
42.1    
42.4    
42.6    
42.8    
43.0    
43.2    
43.4    
43.7    
43.9    
44.1    
44.3    
44.5    
44.8    
45.0    
45.2    
45.4    
45.6    
45.9    
46.1    
46.3    
46.5    
46.7    
46.9    
47.2    
47.4    
47.6    
47.8    
48.0    
48.3    
48.5    
48.7    
48.9    
49.1    
49.3    
49.6    
49.8    
50.0    
50.2    
50.4    
50.7    
50.9    
51.1    
51.3    
51.5    
51.7    
52.0    
52.2    
52.4    
52.6    
52.8    
53.1    
53.3    
53.5    
53.7    
53.9    
54.1    
54.4    
54.6    
54.8    
55.0    
55.2    
55.5    
55.7    
55.9    
56.1    
56.3    
56.6    
56.8    
57.0    
57.2    
57.4    
57.6    
57.9    
58.1    
58.3    
58.5    
58.7    
59.0    
59.2    
59.4    
59.6    
59.8    
60.0    
60.3    
60.5    
60.7    
60.9    
61.1    
61.4    
61.6    
61.8    
62.0    
62.2    
62.4    
62.7    
62.9    
63.1    
63.3    
63.5    
63.8    
64.0    
64.2    
64.4    
64.6    
64.8    
65.1    
65.3    
65.5    
65.7    
65.9    
66.2    
66.4    
66.6    
66.8    
67.0    
67.2    
67.5    
67.7    
67.9    
68.1    
68.3    
68.6    
68.8    
69.0    
69.2    
69.4    
69.7    
69.9    
70.1    
70.3    
70.5    
70.7    
71.0    
71.2    
71.4    
71.6    
71.8    
72.1    
72.3    
72.5    
72.7    
72.9    
73.1    
73.4    
73.6    
73.8    
74.0    
74.2    
74.5    
74.7    
74.9    
75.1    
75.3    
75.5    
75.8    
76.0    
76.2    
76.4    
76.6    
76.9    
77.1    
77.3    
77.5    
77.7    
77.9    
78.2    
78.4    
78.6    
78.8    
79.0    
79.3    
79.5    
79.7    
79.9    
80.1    
80.3    
80.6    
80.8    
81.0    
81.2    
81.4    
81.7    
81.9    
82.1    
82.3    
82.5    
82.8    
83.0    
83.2    
83.4    
83.6    
83.8    
84.1    
84.3    
84.5    
84.7    
84.9    
85.2    
85.4    
85.6    
85.8    
86.0    
86.2    
86.5    
86.7    
86.9    
87.1    
87.3    
87.6    
87.8    
88.0    
88.2    
88.4    
88.6    
88.9    
89.1    
89.3    
89.5    
89.7    
90.0    
90.2    
90.4    
90.6    
90.8    
91.0    
91.3    
91.5    
91.7    
91.9    
92.1    
92.4    
92.6    
92.8    
93.0    
93.2    
93.4    
93.7    
93.9    
94.1    
94.3    
94.5    
94.8    
95.0    
95.2    
95.4    
95.6    
95.9    
96.1    
96.3    
96.5    
96.7    
96.9    
97.2    
97.4    
97.6    
97.8    
98.0    
98.3    
98.5    
98.7    
98.9    
99.1    
99.3    
99.6    
99.8    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 55759, rend_intergenic: 41504  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99054, rend_intergenic: 97191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106215, rend_intergenic: 103059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136456, rend_intergenic: 130476  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145466, rend_intergenic: 144502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 19716
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 18855
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 3554 - 18855
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 5886 - 18855
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 6043 - 18855
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 7097 - 18855
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 7097 - 18655
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support