-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_2039536-2283588

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_22-snap.345-T1
Valid prediction for snap_scaffold_22-snap.353-T1
Valid prediction for GeneMark_model.86914_t
Valid prediction for GeneMark_model.86952_t
Valid prediction for GeneMark_model.86949_t
Valid prediction for GlimmerHMM_glimmerT_50231-T1
Valid prediction for GeneMark_model.86923_t
Valid prediction for GeneMark_model.86948_t
Valid prediction for GeneMark_model.86950_t
Valid prediction for GlimmerHMM_glimmerT_50241-T1
Valid prediction for snap_scaffold_22-snap.341-T1
Valid prediction for snap_scaffold_22-snap.356-T1
Valid prediction for GeneMark_model.86918_t
Valid prediction for snap_scaffold_22-snap.363-T1
Valid prediction for Augustus_model.g33696.t1
Valid prediction for snap_scaffold_22-snap.335-T1
Valid prediction for Augustus_model.g33687.t1
Valid prediction for snap_scaffold_22-snap.367-T1
Valid prediction for GeneMark_model.86944_t
Valid prediction for GeneMark_model.86916_t
Valid prediction for GlimmerHMM_glimmerT_50243-T1
Valid prediction for GeneMark_model.86954_t
Valid prediction for GeneMark_model.86937_t
Valid prediction for snap_scaffold_22-snap.379-T1
Valid prediction for snap_scaffold_22-snap.350-T1
Valid prediction for snap_scaffold_22-snap.349-T1
Valid prediction for GeneMark_model.86922_t
Valid prediction for snap_scaffold_22-snap.339-T1
Valid prediction for GeneMark_model.86913_t
Valid prediction for snap_scaffold_22-snap.370-T1
Valid prediction for GeneMark_model.86910_t
Valid prediction for GeneMark_model.86939_t
Valid prediction for GeneMark_model.86955_t
Valid prediction for GeneMark_model.86936_t
Valid prediction for GlimmerHMM_glimmerT_50229-T1
Valid prediction for GeneMark_model.86942_t
Valid prediction for GeneMark_model.86933_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_22-snap.344-T1
Valid prediction for Augustus_model.g33705.t1
Valid prediction for GeneMark_model.86927_t
Valid prediction for snap_scaffold_22-snap.340-T1
Valid prediction for snap_scaffold_22-snap.338-T1
Valid prediction for GlimmerHMM_glimmerT_50242-T1
Valid prediction for snap_scaffold_22-snap.366-T1
Valid prediction for GeneMark_model.86951_t
Valid prediction for GlimmerHMM_glimmerT_50240-T1
Valid prediction for GlimmerHMM_glimmerT_50233-T1
Valid prediction for Augustus_model.g33689.t1
Valid prediction for snap_scaffold_22-snap.378-T1
Valid prediction for Augustus_model.g33692.t1
Valid prediction for snap_scaffold_22-snap.354-T1
Valid prediction for GeneMark_model.86919_t
Valid prediction for snap_scaffold_22-snap.364-T1
Valid prediction for GlimmerHMM_glimmerT_50230-T1
Valid prediction for snap_scaffold_22-snap.377-T1
Valid prediction for GeneMark_model.86932_t
Valid prediction for snap_scaffold_22-snap.351-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for Augustus_model.g33701.t1
Valid prediction for snap_scaffold_22-snap.358-T1
Valid prediction for GeneMark_model.86946_t
Valid prediction for GeneMark_model.86941_t
Valid prediction for GeneMark_model.86924_t
Valid prediction for GlimmerHMM_glimmerT_50234-T1
Valid prediction for snap_scaffold_22-snap.357-T1
Valid prediction for snap_scaffold_22-snap.371-T1
Valid prediction for Augustus_model.g33691.t1
Valid prediction for GeneMark_model.86915_t
Valid prediction for Augustus_model.g33700.t1
Valid prediction for snap_scaffold_22-snap.352-T1
Valid prediction for snap_scaffold_22-snap.362-T1
Valid prediction for Augustus_model.g33699.t1
Valid prediction for Augustus_model.g33707.t1
Valid prediction for snap_scaffold_22-snap.376-T1
Valid prediction for snap_scaffold_22-snap.369-T1
Valid prediction for GeneMark_model.86920_t
Valid prediction for snap_scaffold_22-snap.359-T1
Valid prediction for GeneMark_model.86935_t
Valid prediction for snap_scaffold_22-snap.375-T1
Valid prediction for snap_scaffold_22-snap.337-T1
Valid prediction for GlimmerHMM_glimmerT_50236-T1
Valid prediction for GeneMark_model.86912_t
Valid prediction for GeneMark_model.86917_t
Valid prediction for GeneMark_model.86934_t
Valid prediction for Augustus_model.g33698.t1
Valid prediction for GeneMark_model.86930_t
Valid prediction for GlimmerHMM_glimmerT_50232-T1
Valid prediction for Augustus_model.g33693.t1
Valid prediction for GeneMark_model.86953_t
Valid prediction for snap_scaffold_22-snap.380-T1
Valid prediction for GeneMark_model.86911_t
Valid prediction for GeneMark_model.86945_t
Valid prediction for GeneMark_model.86925_t
Valid prediction for Augustus_model.g33708.t1
Valid prediction for Augustus_model.g33704.t1
Valid prediction for Augustus_model.g33697.t1
Valid prediction for Augustus_model.g33703.t1
Valid prediction for GeneMark_model.86926_t
Valid prediction for Augustus_model.g33688.t1
Valid prediction for GeneMark_model.86940_t
Valid prediction for snap_scaffold_22-snap.343-T1
Valid prediction for snap_scaffold_22-snap.355-T1
Valid prediction for snap_scaffold_22-snap.372-T1
Valid prediction for snap_scaffold_22-snap.360-T1
Valid prediction for GlimmerHMM_glimmerT_50235-T1
Valid prediction for GlimmerHMM_glimmerT_50238-T1
Valid prediction for snap_scaffold_22-snap.365-T1
Valid prediction for snap_scaffold_22-snap.368-T1
Valid prediction for GeneMark_model.86928_t
Valid prediction for snap_scaffold_22-snap.373-T1
Valid prediction for Augustus_model.g33709.t1
Valid prediction for GlimmerHMM_glimmerT_50237-T1
Valid prediction for GeneMark_model.86931_t
Valid prediction for snap_scaffold_22-snap.342-T1
Valid prediction for snap_scaffold_22-snap.346-T1
Valid prediction for snap_scaffold_22-snap.336-T1
Valid prediction for Augustus_model.g33690.t1
Valid prediction for GlimmerHMM_glimmerT_50239-T1
Valid prediction for GeneMark_model.86943_t
Valid prediction for snap_scaffold_22-snap.348-T1
Valid prediction for Augustus_model.g33706.t1
Valid prediction for snap_scaffold_22-snap.347-T1
Valid prediction for Augustus_model.g33694.t1
Valid prediction for Augustus_model.g33695.t1
Valid prediction for snap_scaffold_22-snap.374-T1
Valid prediction for snap_scaffold_22-snap.361-T1
Valid prediction for GeneMark_model.86947_t
Valid prediction for GeneMark_model.86921_t
Valid prediction for Augustus_model.g33702.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 13485, rend_intergenic: 13482  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18802, rend_intergenic: 18244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27290, rend_intergenic: 22265  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57910, rend_intergenic: 52835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77322, rend_intergenic: 74356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175392, rend_intergenic: 173792  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182399, rend_intergenic: 180529  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 244053
-exon list size: 474


building trellis

0.2    
0.4    
0.6    
0.8    
1.1    
1.3    
1.5    
1.7    
1.9    
2.1    
2.3    
2.5    
2.7    
2.9    
3.2    
3.4    
3.6    
3.8    
4.0    
4.2    
4.4    
4.6    
4.8    
5.0    
5.3    
5.5    
5.7    
5.9    
6.1    
6.3    
6.5    
6.7    
6.9    
7.1    
7.4    
7.6    
7.8    
8.0    
8.2    
8.4    
8.6    
8.8    
9.0    
9.2    
9.5    
9.7    
9.9    
10.1    
10.3    
10.5    
10.7    
10.9    
11.1    
11.3    
11.6    
11.8    
12.0    
12.2    
12.4    
12.6    
12.8    
13.0    
13.2    
13.4    
13.7    
13.9    
14.1    
14.3    
14.5    
14.7    
14.9    
15.1    
15.3    
15.5    
15.8    
16.0    
16.2    
16.4    
16.6    
16.8    
17.0    
17.2    
17.4    
17.6    
17.9    
18.1    
18.3    
18.5    
18.7    
18.9    
19.1    
19.3    
19.5    
19.7    
20.0    
20.2    
20.4    
20.6    
20.8    
21.0    
21.2    
21.4    
21.6    
21.8    
22.1    
22.3    
22.5    
22.7    
22.9    
23.1    
23.3    
23.5    
23.7    
23.9    
24.2    
24.4    
24.6    
24.8    
25.0    
25.2    
25.4    
25.6    
25.8    
26.1    
26.3    
26.5    
26.7    
26.9    
27.1    
27.3    
27.5    
27.7    
27.9    
28.2    
28.4    
28.6    
28.8    
29.0    
29.2    
29.4    
29.6    
29.8    
30.0    
30.3    
30.5    
30.7    
30.9    
31.1    
31.3    
31.5    
31.7    
31.9    
32.1    
32.4    
32.6    
32.8    
33.0    
33.2    
33.4    
33.6    
33.8    
34.0    
34.2    
34.5    
34.7    
34.9    
35.1    
35.3    
35.5    
35.7    
35.9    
36.1    
36.3    
36.6    
36.8    
37.0    
37.2    
37.4    
37.6    
37.8    
38.0    
38.2    
38.4    
38.7    
38.9    
39.1    
39.3    
39.5    
39.7    
39.9    
40.1    
40.3    
40.5    
40.8    
41.0    
41.2    
41.4    
41.6    
41.8    
42.0    
42.2    
42.4    
42.6    
42.9    
43.1    
43.3    
43.5    
43.7    
43.9    
44.1    
44.3    
44.5    
44.7    
45.0    
45.2    
45.4    
45.6    
45.8    
46.0    
46.2    
46.4    
46.6    
46.8    
47.1    
47.3    
47.5    
47.7    
47.9    
48.1    
48.3    
48.5    
48.7    
48.9    
49.2    
49.4    
49.6    
49.8    
50.0    
50.2    
50.4    
50.6    
50.8    
51.1    
51.3    
51.5    
51.7    
51.9    
52.1    
52.3    
52.5    
52.7    
52.9    
53.2    
53.4    
53.6    
53.8    
54.0    
54.2    
54.4    
54.6    
54.8    
55.0    
55.3    
55.5    
55.7    
55.9    
56.1    
56.3    
56.5    
56.7    
56.9    
57.1    
57.4    
57.6    
57.8    
58.0    
58.2    
58.4    
58.6    
58.8    
59.0    
59.2    
59.5    
59.7    
59.9    
60.1    
60.3    
60.5    
60.7    
60.9    
61.1    
61.3    
61.6    
61.8    
62.0    
62.2    
62.4    
62.6    
62.8    
63.0    
63.2    
63.4    
63.7    
63.9    
64.1    
64.3    
64.5    
64.7    
64.9    
65.1    
65.3    
65.5    
65.8    
66.0    
66.2    
66.4    
66.6    
66.8    
67.0    
67.2    
67.4    
67.6    
67.9    
68.1    
68.3    
68.5    
68.7    
68.9    
69.1    
69.3    
69.5    
69.7    
70.0    
70.2    
70.4    
70.6    
70.8    
71.0    
71.2    
71.4    
71.6    
71.8    
72.1    
72.3    
72.5    
72.7    
72.9    
73.1    
73.3    
73.5    
73.7    
73.9    
74.2    
74.4    
74.6    
74.8    
75.0    
75.2    
75.4    
75.6    
75.8    
76.1    
76.3    
76.5    
76.7    
76.9    
77.1    
77.3    
77.5    
77.7    
77.9    
78.2    
78.4    
78.6    
78.8    
79.0    
79.2    
79.4    
79.6    
79.8    
80.0    
80.3    
80.5    
80.7    
80.9    
81.1    
81.3    
81.5    
81.7    
81.9    
82.1    
82.4    
82.6    
82.8    
83.0    
83.2    
83.4    
83.6    
83.8    
84.0    
84.2    
84.5    
84.7    
84.9    
85.1    
85.3    
85.5    
85.7    
85.9    
86.1    
86.3    
86.6    
86.8    
87.0    
87.2    
87.4    
87.6    
87.8    
88.0    
88.2    
88.4    
88.7    
88.9    
89.1    
89.3    
89.5    
89.7    
89.9    
90.1    
90.3    
90.5    
90.8    
91.0    
91.2    
91.4    
91.6    
91.8    
92.0    
92.2    
92.4    
92.6    
92.9    
93.1    
93.3    
93.5    
93.7    
93.9    
94.1    
94.3    
94.5    
94.7    
95.0    
95.2    
95.4    
95.6    
95.8    
96.0    
96.2    
96.4    
96.6    
96.8    
97.1    
97.3    
97.5    
97.7    
97.9    
98.1    
98.3    
98.5    
98.7    
98.9    
99.2    
99.4    
99.6    
99.8    
-found 33 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 13485, rend_intergenic: 13482  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18802, rend_intergenic: 18244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27290, rend_intergenic: 22265  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57910, rend_intergenic: 52835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77322, rend_intergenic: 74356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175392, rend_intergenic: 173792  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182399, rend_intergenic: 180529  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 27 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 230085 - 244053
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support