-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_1853623-2042893

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.86908_t
Valid prediction for GeneMark_model.86891_t
Valid prediction for GeneMark_model.86903_t
Valid prediction for GlimmerHMM_glimmerT_50215-T1
Valid prediction for snap_scaffold_22-snap.323-T1
Valid prediction for GlimmerHMM_glimmerT_50211-T1
Valid prediction for GlimmerHMM_glimmerT_50210-T1
Valid prediction for GeneMark_model.86895_t
Valid prediction for GlimmerHMM_glimmerT_50223-T1
Valid prediction for Augustus_model.g33686.t1
Valid prediction for GeneMark_model.86885_t
Valid prediction for Augustus_model.g33678.t1
Valid prediction for GlimmerHMM_glimmerT_50203-T1
Valid prediction for GeneMark_model.86904_t
Valid prediction for GlimmerHMM_glimmerT_50208-T1
Valid prediction for GlimmerHMM_glimmerT_50213-T1
Valid prediction for GlimmerHMM_glimmerT_50204-T1
Valid prediction for snap_scaffold_22-snap.318-T1
Valid prediction for Augustus_model.g33681.t1
Valid prediction for GlimmerHMM_glimmerT_50220-T1
Valid prediction for snap_scaffold_22-snap.322-T1
Valid prediction for GeneMark_model.86897_t
Valid prediction for Augustus_model.g33677.t1
Valid prediction for GlimmerHMM_glimmerT_50225-T1
Valid prediction for GlimmerHMM_glimmerT_50219-T1
Valid prediction for GeneMark_model.86883_t
Valid prediction for GeneMark_model.86888_t
Valid prediction for snap_scaffold_22-snap.319-T1
Valid prediction for snap_scaffold_22-snap.334-T1
Valid prediction for GeneMark_model.86899_t
Valid prediction for GeneMark_model.86902_t
Valid prediction for GeneMark_model.86898_t
Valid prediction for CodingQuarry_transcript_34052-T1
Valid prediction for GlimmerHMM_glimmerT_50218-T1
Valid prediction for Augustus_model.g33683.t1
Valid prediction for GeneMark_model.86906_t
Valid prediction for GlimmerHMM_glimmerT_50227-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.86892_t
Valid prediction for snap_scaffold_22-snap.320-T1
Valid prediction for GeneMark_model.86901_t
Valid prediction for Augustus_model.g33680.t1
Valid prediction for snap_scaffold_22-snap.327-T1
Valid prediction for Augustus_model.g33684.t1
Valid prediction for snap_scaffold_22-snap.330-T1
Valid prediction for GeneMark_model.86887_t
Valid prediction for GlimmerHMM_glimmerT_50216-T1
Valid prediction for snap_scaffold_22-snap.328-T1
Valid prediction for GeneMark_model.86909_t
Valid prediction for GeneMark_model.86894_t
Valid prediction for GlimmerHMM_glimmerT_50217-T1
Valid prediction for snap_scaffold_22-snap.321-T1
Valid prediction for snap_scaffold_22-snap.317-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_50226-T1
Valid prediction for snap_scaffold_22-snap.326-T1
Valid prediction for snap_scaffold_22-snap.325-T1
Valid prediction for GlimmerHMM_glimmerT_50221-T1
Valid prediction for snap_scaffold_22-snap.331-T1
Valid prediction for GlimmerHMM_glimmerT_50224-T1
Valid prediction for GlimmerHMM_glimmerT_50206-T1
Valid prediction for GlimmerHMM_glimmerT_50214-T1
Valid prediction for GlimmerHMM_glimmerT_50209-T1
Valid prediction for snap_scaffold_22-snap.316-T1
Valid prediction for GlimmerHMM_glimmerT_50205-T1
Valid prediction for GeneMark_model.86893_t
Valid prediction for GlimmerHMM_glimmerT_50228-T1
Valid prediction for pasa_asmbl_29916.p1
Valid prediction for GlimmerHMM_glimmerT_50212-T1
Valid prediction for Augustus_model.g33679.t1
Valid prediction for GlimmerHMM_glimmerT_50207-T1
Valid prediction for GeneMark_model.86889_t
Valid prediction for snap_scaffold_22-snap.333-T1
Valid prediction for HiQ_model.g33685.t1
Valid prediction for GeneMark_model.86900_t
Valid prediction for snap_scaffold_22-snap.324-T1
Valid prediction for GeneMark_model.86884_t
Valid prediction for CodingQuarry_transcript_34053-T1
Valid prediction for GeneMark_model.86886_t
Valid prediction for snap_scaffold_22-snap.332-T1
Valid prediction for Augustus_model.g33682.t1
Valid prediction for GeneMark_model.86905_t
Valid prediction for snap_scaffold_22-snap.329-T1
Valid prediction for GeneMark_model.86890_t
Valid prediction for GlimmerHMM_glimmerT_50222-T1
Valid prediction for GeneMark_model.86907_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 185877, rend_intergenic: 182812  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 189271
-exon list size: 276


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.2    
2.5    
2.9    
3.2    
3.6    
4.0    
4.3    
4.7    
5.0    
5.4    
5.8    
6.1    
6.5    
6.8    
7.2    
7.6    
7.9    
8.3    
8.6    
9.0    
9.4    
9.7    
10.1    
10.4    
10.8    
11.2    
11.5    
11.9    
12.2    
12.6    
12.9    
13.3    
13.7    
14.0    
14.4    
14.7    
15.1    
15.5    
15.8    
16.2    
16.5    
16.9    
17.3    
17.6    
18.0    
18.3    
18.7    
19.1    
19.4    
19.8    
20.1    
20.5    
20.9    
21.2    
21.6    
21.9    
22.3    
22.7    
23.0    
23.4    
23.7    
24.1    
24.5    
24.8    
25.2    
25.5    
25.9    
26.3    
26.6    
27.0    
27.3    
27.7    
28.1    
28.4    
28.8    
29.1    
29.5    
29.9    
30.2    
30.6    
30.9    
31.3    
31.7    
32.0    
32.4    
32.7    
33.1    
33.5    
33.8    
34.2    
34.5    
34.9    
35.3    
35.6    
36.0    
36.3    
36.7    
37.1    
37.4    
37.8    
38.1    
38.5    
38.8    
39.2    
39.6    
39.9    
40.3    
40.6    
41.0    
41.4    
41.7    
42.1    
42.4    
42.8    
43.2    
43.5    
43.9    
44.2    
44.6    
45.0    
45.3    
45.7    
46.0    
46.4    
46.8    
47.1    
47.5    
47.8    
48.2    
48.6    
48.9    
49.3    
49.6    
50.0    
50.4    
50.7    
51.1    
51.4    
51.8    
52.2    
52.5    
52.9    
53.2    
53.6    
54.0    
54.3    
54.7    
55.0    
55.4    
55.8    
56.1    
56.5    
56.8    
57.2    
57.6    
57.9    
58.3    
58.6    
59.0    
59.4    
59.7    
60.1    
60.4    
60.8    
61.2    
61.5    
61.9    
62.2    
62.6    
62.9    
63.3    
63.7    
64.0    
64.4    
64.7    
65.1    
65.5    
65.8    
66.2    
66.5    
66.9    
67.3    
67.6    
68.0    
68.3    
68.7    
69.1    
69.4    
69.8    
70.1    
70.5    
70.9    
71.2    
71.6    
71.9    
72.3    
72.7    
73.0    
73.4    
73.7    
74.1    
74.5    
74.8    
75.2    
75.5    
75.9    
76.3    
76.6    
77.0    
77.3    
77.7    
78.1    
78.4    
78.8    
79.1    
79.5    
79.9    
80.2    
80.6    
80.9    
81.3    
81.7    
82.0    
82.4    
82.7    
83.1    
83.5    
83.8    
84.2    
84.5    
84.9    
85.3    
85.6    
86.0    
86.3    
86.7    
87.1    
87.4    
87.8    
88.1    
88.5    
88.8    
89.2    
89.6    
89.9    
90.3    
90.6    
91.0    
91.4    
91.7    
92.1    
92.4    
92.8    
93.2    
93.5    
93.9    
94.2    
94.6    
95.0    
95.3    
95.7    
96.0    
96.4    
96.8    
97.1    
97.5    
97.8    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 20 predictions from path traversal
Error with prediction: snap lend_intergenic: 185877, rend_intergenic: 182812  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support