-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_1410427-1648747

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.86848_t
Valid prediction for GlimmerHMM_glimmerT_50172-T1
Valid prediction for GeneMark_model.86833_t
Valid prediction for GeneMark_model.86829_t
Valid prediction for GeneMark_model.86844_t
Valid prediction for GlimmerHMM_glimmerT_50171-T1
Valid prediction for GeneMark_model.86852_t
Valid prediction for GeneMark_model.86832_t
Valid prediction for GeneMark_model.86831_t
Valid prediction for GlimmerHMM_glimmerT_50179-T1
Valid prediction for GeneMark_model.86847_t
Valid prediction for GeneMark_model.86838_t
Valid prediction for snap_scaffold_22-snap.268-T1
Valid prediction for snap_scaffold_22-snap.277-T1
Valid prediction for GlimmerHMM_glimmerT_50176-T1
Valid prediction for GeneMark_model.86837_t
Valid prediction for GeneMark_model.86835_t
Valid prediction for GlimmerHMM_glimmerT_50173-T1
Valid prediction for snap_scaffold_22-snap.275-T1
Valid prediction for snap_scaffold_22-snap.266-T1
Valid prediction for GeneMark_model.86846_t
Valid prediction for GeneMark_model.86841_t
Valid prediction for GlimmerHMM_glimmerT_50165-T1
Valid prediction for GlimmerHMM_glimmerT_50175-T1
Valid prediction for GlimmerHMM_glimmerT_50170-T1
Valid prediction for GeneMark_model.86853_t
Valid prediction for snap_scaffold_22-snap.278-T1
Valid prediction for GeneMark_model.86850_t
Valid prediction for Augustus_model.g33655.t1
Valid prediction for snap_scaffold_22-snap.280-T1
Valid prediction for snap_scaffold_22-snap.269-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_22-snap.270-T1
Valid prediction for GeneMark_model.86836_t
Valid prediction for snap_scaffold_22-snap.282-T1
Valid prediction for Augustus_model.g33660.t1
Valid prediction for snap_scaffold_22-snap.284-T1
Valid prediction for GlimmerHMM_glimmerT_50182-T1
Valid prediction for snap_scaffold_22-snap.276-T1
Valid prediction for snap_scaffold_22-snap.283-T1
Valid prediction for snap_scaffold_22-snap.271-T1
Valid prediction for snap_scaffold_22-snap.267-T1
Valid prediction for GlimmerHMM_glimmerT_50166-T1
Valid prediction for GeneMark_model.86830_t
Valid prediction for Augustus_model.g33658.t1
Valid prediction for GeneMark_model.86849_t
Valid prediction for GlimmerHMM_glimmerT_50169-T1
Valid prediction for GlimmerHMM_glimmerT_50177-T1
Valid prediction for GeneMark_model.86834_t
Valid prediction for GlimmerHMM_glimmerT_50178-T1
Valid prediction for GlimmerHMM_glimmerT_50174-T1
Valid prediction for GeneMark_model.86851_t
Valid prediction for Augustus_model.g33657.t1
Valid prediction for GlimmerHMM_glimmerT_50181-T1
Valid prediction for snap_scaffold_22-snap.272-T1
Valid prediction for GeneMark_model.86839_t
Valid prediction for GlimmerHMM_glimmerT_50167-T1
Valid prediction for snap_scaffold_22-snap.274-T1
Valid prediction for snap_scaffold_22-snap.279-T1
Valid prediction for Augustus_model.g33656.t1
Valid prediction for Augustus_model.g33659.t1
Valid prediction for GeneMark_model.86842_t
Valid prediction for GlimmerHMM_glimmerT_50164-T1
Valid prediction for GeneMark_model.86845_t
Valid prediction for GeneMark_model.86854_t
Valid prediction for GeneMark_model.86840_t
Valid prediction for GeneMark_model.86843_t
Valid prediction for snap_scaffold_22-snap.273-T1
Valid prediction for GlimmerHMM_glimmerT_50168-T1
Valid prediction for GlimmerHMM_glimmerT_50180-T1
Valid prediction for snap_scaffold_22-snap.281-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 28959, rend_intergenic: 25739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 238321
-exon list size: 254


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.3    
2.7    
3.1    
3.5    
3.9    
4.3    
4.7    
5.1    
5.5    
5.9    
6.2    
6.6    
7.0    
7.4    
7.8    
8.2    
8.6    
9.0    
9.4    
9.8    
10.2    
10.5    
10.9    
11.3    
11.7    
12.1    
12.5    
12.9    
13.3    
13.7    
14.1    
14.5    
14.8    
15.2    
15.6    
16.0    
16.4    
16.8    
17.2    
17.6    
18.0    
18.4    
18.8    
19.1    
19.5    
19.9    
20.3    
20.7    
21.1    
21.5    
21.9    
22.3    
22.7    
23.0    
23.4    
23.8    
24.2    
24.6    
25.0    
25.4    
25.8    
26.2    
26.6    
27.0    
27.3    
27.7    
28.1    
28.5    
28.9    
29.3    
29.7    
30.1    
30.5    
30.9    
31.2    
31.6    
32.0    
32.4    
32.8    
33.2    
33.6    
34.0    
34.4    
34.8    
35.2    
35.5    
35.9    
36.3    
36.7    
37.1    
37.5    
37.9    
38.3    
38.7    
39.1    
39.5    
39.8    
40.2    
40.6    
41.0    
41.4    
41.8    
42.2    
42.6    
43.0    
43.4    
43.8    
44.1    
44.5    
44.9    
45.3    
45.7    
46.1    
46.5    
46.9    
47.3    
47.7    
48.0    
48.4    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.6    
52.0    
52.3    
52.7    
53.1    
53.5    
53.9    
54.3    
54.7    
55.1    
55.5    
55.9    
56.2    
56.6    
57.0    
57.4    
57.8    
58.2    
58.6    
59.0    
59.4    
59.8    
60.2    
60.5    
60.9    
61.3    
61.7    
62.1    
62.5    
62.9    
63.3    
63.7    
64.1    
64.5    
64.8    
65.2    
65.6    
66.0    
66.4    
66.8    
67.2    
67.6    
68.0    
68.4    
68.8    
69.1    
69.5    
69.9    
70.3    
70.7    
71.1    
71.5    
71.9    
72.3    
72.7    
73.0    
73.4    
73.8    
74.2    
74.6    
75.0    
75.4    
75.8    
76.2    
76.6    
77.0    
77.3    
77.7    
78.1    
78.5    
78.9    
79.3    
79.7    
80.1    
80.5    
80.9    
81.2    
81.6    
82.0    
82.4    
82.8    
83.2    
83.6    
84.0    
84.4    
84.8    
85.2    
85.5    
85.9    
86.3    
86.7    
87.1    
87.5    
87.9    
88.3    
88.7    
89.1    
89.5    
89.8    
90.2    
90.6    
91.0    
91.4    
91.8    
92.2    
92.6    
93.0    
93.4    
93.8    
94.1    
94.5    
94.9    
95.3    
95.7    
96.1    
96.5    
96.9    
97.3    
97.7    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 14 predictions from path traversal
Error with prediction: snap lend_intergenic: 28959, rend_intergenic: 25739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 16562
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 227084 - 238321
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 227417 - 238321
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 228157 - 238321
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support