-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_1189037-1412782

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.86804_t
Valid prediction for snap_scaffold_22-snap.252-T1
Valid prediction for GeneMark_model.86806_t
Valid prediction for snap_scaffold_22-snap.260-T1
Valid prediction for snap_scaffold_22-snap.259-T1
Valid prediction for GeneMark_model.86816_t
Valid prediction for GeneMark_model.86791_t
Valid prediction for snap_scaffold_22-snap.257-T1
Valid prediction for GeneMark_model.86827_t
Valid prediction for GeneMark_model.86794_t
Valid prediction for snap_scaffold_22-snap.241-T1
Valid prediction for Augustus_model.g33653.t1
Valid prediction for GlimmerHMM_glimmerT_50157-T1
Valid prediction for snap_scaffold_22-snap.238-T1
Valid prediction for GlimmerHMM_glimmerT_50162-T1
Valid prediction for snap_scaffold_22-snap.255-T1
Valid prediction for GeneMark_model.86802_t
Valid prediction for snap_scaffold_22-snap.248-T1
Valid prediction for GeneMark_model.86824_t
Valid prediction for GeneMark_model.86817_t
Valid prediction for GlimmerHMM_glimmerT_50149-T1
Valid prediction for snap_scaffold_22-snap.240-T1
Valid prediction for GlimmerHMM_glimmerT_50150-T1
Valid prediction for GeneMark_model.86818_t
Valid prediction for snap_scaffold_22-snap.242-T1
Valid prediction for GlimmerHMM_glimmerT_50156-T1
Valid prediction for GeneMark_model.86789_t
Valid prediction for Augustus_model.g33650.t1
Valid prediction for GlimmerHMM_glimmerT_50140-T1
Valid prediction for GlimmerHMM_glimmerT_50146-T1
Valid prediction for GeneMark_model.86828_t
Valid prediction for Augustus_model.g33647.t1
Valid prediction for snap_scaffold_22-snap.243-T1
Valid prediction for GlimmerHMM_glimmerT_50160-T1
Valid prediction for snap_scaffold_22-snap.254-T1
Valid prediction for GeneMark_model.86792_t
Valid prediction for GlimmerHMM_glimmerT_50145-T1
Valid prediction for GeneMark_model.86799_t
Valid prediction for GlimmerHMM_glimmerT_50163-T1
Valid prediction for snap_scaffold_22-snap.245-T1
Valid prediction for GeneMark_model.86821_t
Valid prediction for GlimmerHMM_glimmerT_50147-T1
Valid prediction for GeneMark_model.86805_t
Valid prediction for snap_scaffold_22-snap.234-T1
Valid prediction for GeneMark_model.86826_t
Valid prediction for GeneMark_model.86809_t
Valid prediction for GlimmerHMM_glimmerT_50141-T1
Valid prediction for snap_scaffold_22-snap.264-T1
Valid prediction for GlimmerHMM_glimmerT_50148-T1
Valid prediction for GlimmerHMM_glimmerT_50143-T1
Valid prediction for snap_scaffold_22-snap.265-T1
Valid prediction for Augustus_model.g33654.t1
Valid prediction for snap_scaffold_22-snap.244-T1
Valid prediction for GeneMark_model.86800_t
Valid prediction for GeneMark_model.86814_t
Valid prediction for snap_scaffold_22-snap.262-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_22-snap.235-T1
Valid prediction for GeneMark_model.86819_t
Valid prediction for GlimmerHMM_glimmerT_50142-T1
Valid prediction for snap_scaffold_22-snap.246-T1
Valid prediction for GeneMark_model.86798_t
Valid prediction for snap_scaffold_22-snap.249-T1
Valid prediction for GeneMark_model.86815_t
Valid prediction for Augustus_model.g33649.t1
Valid prediction for Augustus_model.g33646.t1
Valid prediction for GeneMark_model.86807_t
Valid prediction for GlimmerHMM_glimmerT_50161-T1
Valid prediction for GeneMark_model.86811_t
Valid prediction for GeneMark_model.86825_t
Valid prediction for snap_scaffold_22-snap.256-T1
Valid prediction for GlimmerHMM_glimmerT_50152-T1
Valid prediction for GeneMark_model.86796_t
Valid prediction for Augustus_model.g33652.t1
Valid prediction for GeneMark_model.86803_t
Valid prediction for GeneMark_model.86810_t
Valid prediction for GeneMark_model.86797_t
Valid prediction for snap_scaffold_22-snap.258-T1
Valid prediction for GlimmerHMM_glimmerT_50151-T1
Valid prediction for snap_scaffold_22-snap.251-T1
Valid prediction for GlimmerHMM_glimmerT_50159-T1
Valid prediction for GlimmerHMM_glimmerT_50144-T1
Valid prediction for GeneMark_model.86812_t
Valid prediction for Augustus_model.g33648.t1
Valid prediction for GeneMark_model.86790_t
Valid prediction for GeneMark_model.86813_t
Valid prediction for snap_scaffold_22-snap.253-T1
Valid prediction for GlimmerHMM_glimmerT_50158-T1
Valid prediction for snap_scaffold_22-snap.239-T1
Valid prediction for GeneMark_model.86793_t
Valid prediction for GeneMark_model.86808_t
Valid prediction for GeneMark_model.86823_t
Valid prediction for snap_scaffold_22-snap.237-T1
Valid prediction for GeneMark_model.86822_t
Valid prediction for snap_scaffold_22-snap.263-T1
Valid prediction for snap_scaffold_22-snap.250-T1
Valid prediction for GeneMark_model.86820_t
Valid prediction for Augustus_model.g33651.t1
Valid prediction for GlimmerHMM_glimmerT_50154-T1
Valid prediction for snap_scaffold_22-snap.236-T1
Valid prediction for GlimmerHMM_glimmerT_50155-T1
Valid prediction for snap_scaffold_22-snap.261-T1
Valid prediction for GeneMark_model.86801_t
Valid prediction for GeneMark_model.86795_t
Valid prediction for snap_scaffold_22-snap.247-T1
Valid prediction for GlimmerHMM_glimmerT_50153-T1
Valid prediction for snap_scaffold_22-snap.233-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15348, rend_intergenic: 11909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50379, rend_intergenic: 47903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77855, rend_intergenic: 75180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82452, rend_intergenic: 81124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113062, rend_intergenic: 109754  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124724, rend_intergenic: 123071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 223746
-exon list size: 419


building trellis

0.2    
0.5    
0.7    
1.0    
1.2    
1.4    
1.7    
1.9    
2.1    
2.4    
2.6    
2.9    
3.1    
3.3    
3.6    
3.8    
4.0    
4.3    
4.5    
4.8    
5.0    
5.2    
5.5    
5.7    
5.9    
6.2    
6.4    
6.7    
6.9    
7.1    
7.4    
7.6    
7.8    
8.1    
8.3    
8.6    
8.8    
9.0    
9.3    
9.5    
9.7    
10.0    
10.2    
10.5    
10.7    
10.9    
11.2    
11.4    
11.6    
11.9    
12.1    
12.4    
12.6    
12.8    
13.1    
13.3    
13.5    
13.8    
14.0    
14.3    
14.5    
14.7    
15.0    
15.2    
15.4    
15.7    
15.9    
16.2    
16.4    
16.6    
16.9    
17.1    
17.3    
17.6    
17.8    
18.1    
18.3    
18.5    
18.8    
19.0    
19.2    
19.5    
19.7    
20.0    
20.2    
20.4    
20.7    
20.9    
21.1    
21.4    
21.6    
21.9    
22.1    
22.3    
22.6    
22.8    
23.0    
23.3    
23.5    
23.8    
24.0    
24.2    
24.5    
24.7    
24.9    
25.2    
25.4    
25.7    
25.9    
26.1    
26.4    
26.6    
26.8    
27.1    
27.3    
27.6    
27.8    
28.0    
28.3    
28.5    
28.7    
29.0    
29.2    
29.5    
29.7    
29.9    
30.2    
30.4    
30.6    
30.9    
31.1    
31.4    
31.6    
31.8    
32.1    
32.3    
32.5    
32.8    
33.0    
33.3    
33.5    
33.7    
34.0    
34.2    
34.4    
34.7    
34.9    
35.2    
35.4    
35.6    
35.9    
36.1    
36.3    
36.6    
36.8    
37.1    
37.3    
37.5    
37.8    
38.0    
38.2    
38.5    
38.7    
39.0    
39.2    
39.4    
39.7    
39.9    
40.1    
40.4    
40.6    
40.9    
41.1    
41.3    
41.6    
41.8    
42.0    
42.3    
42.5    
42.8    
43.0    
43.2    
43.5    
43.7    
43.9    
44.2    
44.4    
44.7    
44.9    
45.1    
45.4    
45.6    
45.8    
46.1    
46.3    
46.6    
46.8    
47.0    
47.3    
47.5    
47.7    
48.0    
48.2    
48.5    
48.7    
48.9    
49.2    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.8    
51.1    
51.3    
51.5    
51.8    
52.0    
52.3    
52.5    
52.7    
53.0    
53.2    
53.4    
53.7    
53.9    
54.2    
54.4    
54.6    
54.9    
55.1    
55.3    
55.6    
55.8    
56.1    
56.3    
56.5    
56.8    
57.0    
57.2    
57.5    
57.7    
58.0    
58.2    
58.4    
58.7    
58.9    
59.1    
59.4    
59.6    
59.9    
60.1    
60.3    
60.6    
60.8    
61.0    
61.3    
61.5    
61.8    
62.0    
62.2    
62.5    
62.7    
62.9    
63.2    
63.4    
63.7    
63.9    
64.1    
64.4    
64.6    
64.8    
65.1    
65.3    
65.6    
65.8    
66.0    
66.3    
66.5    
66.7    
67.0    
67.2    
67.5    
67.7    
67.9    
68.2    
68.4    
68.6    
68.9    
69.1    
69.4    
69.6    
69.8    
70.1    
70.3    
70.5    
70.8    
71.0    
71.3    
71.5    
71.7    
72.0    
72.2    
72.4    
72.7    
72.9    
73.2    
73.4    
73.6    
73.9    
74.1    
74.3    
74.6    
74.8    
75.1    
75.3    
75.5    
75.8    
76.0    
76.2    
76.5    
76.7    
77.0    
77.2    
77.4    
77.7    
77.9    
78.1    
78.4    
78.6    
78.9    
79.1    
79.3    
79.6    
79.8    
80.0    
80.3    
80.5    
80.8    
81.0    
81.2    
81.5    
81.7    
81.9    
82.2    
82.4    
82.7    
82.9    
83.1    
83.4    
83.6    
83.8    
84.1    
84.3    
84.6    
84.8    
85.0    
85.3    
85.5    
85.7    
86.0    
86.2    
86.5    
86.7    
86.9    
87.2    
87.4    
87.6    
87.9    
88.1    
88.4    
88.6    
88.8    
89.1    
89.3    
89.5    
89.8    
90.0    
90.3    
90.5    
90.7    
91.0    
91.2    
91.4    
91.7    
91.9    
92.2    
92.4    
92.6    
92.9    
93.1    
93.3    
93.6    
93.8    
94.1    
94.3    
94.5    
94.8    
95.0    
95.2    
95.5    
95.7    
96.0    
96.2    
96.4    
96.7    
96.9    
97.1    
97.4    
97.6    
97.9    
98.1    
98.3    
98.6    
98.8    
99.0    
99.3    
99.5    
99.8    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 15348, rend_intergenic: 11909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50379, rend_intergenic: 47903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77855, rend_intergenic: 75180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82452, rend_intergenic: 81124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113062, rend_intergenic: 109754  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124724, rend_intergenic: 123071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12369
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10860
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support