-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_11595164-11768951

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 135643, 135747
Sorry, prediction pasa_asmbl_29713.p3 fails validation.
(GTG)	 AG	135643-135747	GT	AGG
(GAT)	 AG	136028-136180	GT	AGG
(GAG)	 AG	136607-136743	GT	AAG
(GGA)	 AG	136828-136867	GG	GAG
-recovered pasa_asmbl_29713.p3, terminal, 136828, 136867
-recovered pasa_asmbl_29713.p3, internal, 135643, 135747
-recovered pasa_asmbl_29713.p3, internal, 136028, 136180
-recovered pasa_asmbl_29713.p3, internal, 136607, 136743
Valid prediction for GlimmerHMM_glimmerT_51507-T1
Valid prediction for GeneMark_model.89644_t
Couldn't classify 147735, 147791
Couldn't classify 150662, 150751
Sorry, prediction pasa_asmbl_29714.p1 fails validation.
(CTG)	 AG	147735-147791	GT	TGG
(GCC)	 AG	149066-149172	GT	AGG
(GAA)	 AG	149997-150101	GT	AGG
(GCT)	 AG	150408-150549	GT	AGG
(GAT)	 AG	150662-150751	GG	AAG
-recovered pasa_asmbl_29714.p1, internal, 147735, 147791
-recovered pasa_asmbl_29714.p1, internal, 149066, 149172
-recovered pasa_asmbl_29714.p1, internal, 149997, 150101
-recovered pasa_asmbl_29714.p1, internal, 150408, 150549
Valid prediction for snap_scaffold_22-snap.2428-T1
Valid prediction for snap_scaffold_22-snap.2416-T1
Valid prediction for GeneMark_model.89616_t
Valid prediction for GeneMark_model.89619_t
Valid prediction for GlimmerHMM_glimmerT_51504-T1
Couldn't classify 121000, 121260
Sorry, prediction pasa_asmbl_29709.p1 fails validation.
(ATG)	 GC	120396-120542	GT	AGG
(GTA)	 AG	121000-121260	AT	GTA
-recovered pasa_asmbl_29709.p1, initial, 120396, 120542
Valid prediction for GlimmerHMM_glimmerT_51494-T1
Valid prediction for GeneMark_model.89612_t
Couldn't classify 33789, 33838
Couldn't classify 36372, 36537
Sorry, prediction pasa_asmbl_29701.p1 fails validation.
(CAG)	 TG	33789-33838	GT	AGG
(GAT)	 AG	35225-35346	GT	TGG
(ACC)	 AG	36005-36083	GT	CGG
(TAT)	 AG	36372-36537	GA	GGG
-recovered pasa_asmbl_29701.p1, internal, 35225, 35346
-recovered pasa_asmbl_29701.p1, internal, 36005, 36083
Valid prediction for snap_scaffold_22-snap.2410-T1
Valid prediction for GlimmerHMM_glimmerT_51492-T1
Valid prediction for GlimmerHMM_glimmerT_51495-T1
Valid prediction for GlimmerHMM_glimmerT_51508-T1
Valid prediction for GlimmerHMM_glimmerT_51509-T1
Valid prediction for snap_scaffold_22-snap.2406-T1
Valid prediction for GeneMark_model.89638_t
Couldn't classify 108908, 109069
Sorry, prediction pasa_asmbl_29706.p1 fails validation.
(ATG)	 AG	105529-106161	GT	GGG
(TCT)	 AG	108908-109069	GA	ATG
-recovered pasa_asmbl_29706.p1, initial, 105529, 106161
-recovered pasa_asmbl_29706.p1, internal, 105529, 106161
Valid prediction for snap_scaffold_22-snap.2436-T1
Valid prediction for GeneMark_model.89617_t
Valid prediction for snap_scaffold_22-snap.2424-T1
Valid prediction for snap_scaffold_22-snap.2435-T1
Valid prediction for GlimmerHMM_glimmerT_51498-T1
Valid prediction for GlimmerHMM_glimmerT_51493-T1
Valid prediction for GeneMark_model.89625_t
Valid prediction for GeneMark_model.89647_t
Valid prediction for snap_scaffold_22-snap.2422-T1
Couldn't classify 172337, 172832
Sorry, prediction GeneMark_model.89652_t fails validation.
(ATG)	 GG	169732-169744	GT	AGG
(GTG)	 AG	172337-172832	GT	TGG
-recovered GeneMark_model.89652_t, initial, 169732, 169744
-recovered GeneMark_model.89652_t, internal, 172337, 172832
Valid prediction for snap_scaffold_22-snap.2407-T1
Couldn't classify 101282, 101480
Sorry, prediction pasa_asmbl_29702.p1 fails validation.
(ATG)	 GG	98020-98113	GT	CGG
(CTC)	 AG	99264-99442	GT	CAG
(CTG)	 AG	99698-99902	GT	AGG
(GCC)	 AG	100547-100721	GT	GGG
(GGC)	 AG	101282-101480	GG	TGG
-recovered pasa_asmbl_29702.p1, initial, 98020, 98113
-recovered pasa_asmbl_29702.p1, internal, 99264, 99442
-recovered pasa_asmbl_29702.p1, internal, 99698, 99902
-recovered pasa_asmbl_29702.p1, internal, 100547, 100721
Valid prediction for snap_scaffold_22-snap.2414-T1
Valid prediction for GeneMark_model.89609_t
Valid prediction for snap_scaffold_22-snap.2411-T1
Valid prediction for GeneMark_model.89633_t
Valid prediction for GlimmerHMM_glimmerT_51489-T1
Valid prediction for GlimmerHMM_glimmerT_51503-T1
Couldn't classify 27823, 27960
Sorry, prediction GeneMark_model.89614_t fails validation.
(ATG)	 TG	19412-19555	GT	AGG
(GAG)	 AG	19851-19958	GT	AGG
(GAG)	 AG	20871-21089	GT	AGG
(GTG)	 AG	22490-22672	GT	AGG
(TAC)	 AG	22950-23201	GT	AGG
(ATC)	 AG	23604-23689	GT	AGG
(GTG)	 AG	25141-25246	GT	AGG
(AGT)	 AG	26448-26560	GT	CTG
(AGA)	 AG	26712-26727	GT	AGG
(ATG)	 AG	26827-27008	GT	ATG
(TAT)	 AG	27038-27094	GT	AGG
(TAT)	 AG	27141-27197	GT	AGG
(TAT)	 AG	27244-27268	GT	AGG
(GTG)	 AG	27823-27960	GT	TGG
-recovered GeneMark_model.89614_t, initial, 19412, 19555
-recovered GeneMark_model.89614_t, initial, 26827, 27008
-recovered GeneMark_model.89614_t, internal, 19851, 19958
-recovered GeneMark_model.89614_t, internal, 20871, 21089
-recovered GeneMark_model.89614_t, internal, 22490, 22672
-recovered GeneMark_model.89614_t, internal, 22950, 23201
-recovered GeneMark_model.89614_t, internal, 23604, 23689
-recovered GeneMark_model.89614_t, internal, 25141, 25246
-recovered GeneMark_model.89614_t, internal, 26448, 26560
-recovered GeneMark_model.89614_t, internal, 26712, 26727
-recovered GeneMark_model.89614_t, internal, 26827, 27008
-recovered GeneMark_model.89614_t, internal, 27038, 27094
-recovered GeneMark_model.89614_t, internal, 27141, 27197
-recovered GeneMark_model.89614_t, internal, 27244, 27268
-recovered GeneMark_model.89614_t, internal, 27823, 27960
Valid prediction for snap_scaffold_22-snap.2430-T1
Valid prediction for GeneMark_model.89641_t
Valid prediction for GeneMark_model.89643_t
Valid prediction for snap_scaffold_22-snap.2404-T1
Valid prediction for GeneMark_model.89648_t
Valid prediction for GlimmerHMM_glimmerT_51510-T1
Valid prediction for GeneMark_model.89620_t
Valid prediction for GeneMark_model.89610_t
Valid prediction for GeneMark_model.89651_t
Valid prediction for snap_scaffold_22-snap.2427-T1
Valid prediction for CodingQuarry_transcript_34258-T1
Valid prediction for GeneMark_model.89622_t
Couldn't classify 172284, 172832
Sorry, prediction GlimmerHMM_glimmerT_51511-T1 fails validation.
(ATG)	 TC	166735-166797	GT	TGG
(TTC)	 AG	166890-167053	GT	AGG
(GTC)	 AG	168221-168344	GT	AGG
(GTG)	 AG	168511-168579	GT	AGG
(GTG)	 AG	168832-169006	GT	TGG
(CTT)	 AG	169357-169442	GT	AGG
(ACG)	 AG	169520-169605	GT	GGG
(CGC)	 AG	170565-170642	GT	AAG
(ACT)	 AG	172284-172832	GT	TGG
-recovered GlimmerHMM_glimmerT_51511-T1, initial, 166735, 166797
add_exon() Sorry, GlimmerHMM_glimmerT_51511-T1 166890-167053-terminal-2 is invalid.
-recovered GlimmerHMM_glimmerT_51511-T1, terminal, 166890, 167053
-recovered GlimmerHMM_glimmerT_51511-T1, internal, 166890, 167053
-recovered GlimmerHMM_glimmerT_51511-T1, internal, 168221, 168344
-recovered GlimmerHMM_glimmerT_51511-T1, internal, 168511, 168579
-recovered GlimmerHMM_glimmerT_51511-T1, internal, 168832, 169006
-recovered GlimmerHMM_glimmerT_51511-T1, internal, 169357, 169442
-recovered GlimmerHMM_glimmerT_51511-T1, internal, 169520, 169605
-recovered GlimmerHMM_glimmerT_51511-T1, internal, 170565, 170642
-recovered GlimmerHMM_glimmerT_51511-T1, internal, 172284, 172832
Valid prediction for GeneMark_model.89645_t
Valid prediction for GlimmerHMM_glimmerT_51490-T1
Valid prediction for snap_scaffold_22-snap.2431-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.89636_t
Couldn't classify 125246, 125313
Sorry, prediction pasa_asmbl_30462.p1 fails validation.
(CAG)	 TA	125246-125313	GT	AAG
(AGC)	 AG	126270-126420	GT	AGG
(GAC)	 AG	126754-126877	GT	GGG
(ACA)	 AG	126969-127096	AT	AAA
-recovered pasa_asmbl_30462.p1, terminal, 126969, 127096
-recovered pasa_asmbl_30462.p1, internal, 126270, 126420
-recovered pasa_asmbl_30462.p1, internal, 126754, 126877
Valid prediction for GeneMark_model.89642_t
Valid prediction for snap_scaffold_22-snap.2423-T1
Valid prediction for GeneMark_model.89632_t
Couldn't classify 118542, 118940
Couldn't classify 119445, 119582
Sorry, prediction pasa_asmbl_30464.p1 fails validation.
(GAA)	 AG	118542-118940	GT	CGG
(GTA)	 AG	119094-119183	GT	AGG
(GAT)	 AG	119445-119582	GT	AGG
-recovered pasa_asmbl_30464.p1, internal, 118542, 118940
-recovered pasa_asmbl_30464.p1, internal, 119094, 119183
-recovered pasa_asmbl_30464.p1, internal, 119445, 119582
Couldn't classify 139958, 140012
Sorry, prediction GeneMark_model.89615_t fails validation.
(ATG)	 AC	138544-138643	GT	GGG
(AGA)	 AG	138835-138850	GT	GTG
(AGA)	 AG	139041-139049	GT	GAG
(AGA)	 AG	139078-139092	GT	GAG
(AGA)	 AG	139266-139274	GT	GTG
(TGT)	 AG	139530-139547	GT	GAG
(TGT)	 AG	139671-139694	GT	GTG
(AGA)	 AG	139722-139730	GT	GTG
(TGT)	 AG	139754-139759	GT	TGG
(TGT)	 AG	139851-139871	GT	GAG
(AGC)	 AG	139958-140012	GT	AGG
-recovered GeneMark_model.89615_t, initial, 138544, 138643
-recovered GeneMark_model.89615_t, internal, 138835, 138850
-recovered GeneMark_model.89615_t, internal, 139041, 139049
-recovered GeneMark_model.89615_t, internal, 139078, 139092
-recovered GeneMark_model.89615_t, internal, 139266, 139274
-recovered GeneMark_model.89615_t, internal, 139530, 139547
-recovered GeneMark_model.89615_t, internal, 139671, 139694
-recovered GeneMark_model.89615_t, internal, 139722, 139730
-recovered GeneMark_model.89615_t, internal, 139754, 139759
-recovered GeneMark_model.89615_t, internal, 139851, 139871
-recovered GeneMark_model.89615_t, internal, 139958, 140012
Valid prediction for GeneMark_model.89646_t
Valid prediction for GeneMark_model.89639_t
Valid prediction for snap_scaffold_22-snap.2434-T1
Valid prediction for GeneMark_model.89649_t
Valid prediction for snap_scaffold_22-snap.2405-T1
Valid prediction for GeneMark_model.89629_t
Valid prediction for snap_scaffold_22-snap.2409-T1
Couldn't classify 116799, 117033
Couldn't classify 118331, 118376
Sorry, prediction pasa_asmbl_30543.p1 fails validation.
(TCC)	 GG	116799-117033	GT	AGG
(GCT)	 AG	117274-117388	GT	AGG
(GGT)	 AG	118331-118376	TC	CAT
-recovered pasa_asmbl_30543.p1, internal, 117274, 117388
Valid prediction for snap_scaffold_22-snap.2420-T1
Valid prediction for snap_scaffold_22-snap.2413-T1
Valid prediction for snap_scaffold_22-snap.2412-T1
Valid prediction for GlimmerHMM_glimmerT_51491-T1
Valid prediction for snap_scaffold_22-snap.2417-T1
Valid prediction for GlimmerHMM_glimmerT_51501-T1
Valid prediction for snap_scaffold_22-snap.2433-T1
Valid prediction for GeneMark_model.89611_t
Valid prediction for snap_scaffold_22-snap.2415-T1
Valid prediction for GeneMark_model.89621_t
Valid prediction for GeneMark_model.89637_t
Valid prediction for CodingQuarry_transcript_34255-T1
Valid prediction for snap_scaffold_22-snap.2425-T1
Valid prediction for GeneMark_model.89623_t
Valid prediction for snap_scaffold_22-snap.2429-T1
Valid prediction for snap_scaffold_22-snap.2432-T1
Valid prediction for GeneMark_model.89640_t
Valid prediction for snap_scaffold_22-snap.2408-T1
Valid prediction for GeneMark_model.89626_t
Valid prediction for snap_scaffold_22-snap.2421-T1
Valid prediction for GeneMark_model.89630_t
Valid prediction for pasa_asmbl_30458.p1
Valid prediction for GlimmerHMM_glimmerT_51505-T1
Valid prediction for GlimmerHMM_glimmerT_51497-T1
Valid prediction for CodingQuarry_transcript_34256-T1
Valid prediction for snap_scaffold_22-snap.2419-T1
Valid prediction for GeneMark_model.89624_t
Valid prediction for GlimmerHMM_glimmerT_51502-T1
Valid prediction for GlimmerHMM_glimmerT_51506-T1
Valid prediction for GlimmerHMM_glimmerT_51499-T1
Valid prediction for GlimmerHMM_glimmerT_51500-T1
Valid prediction for snap_scaffold_22-snap.2418-T1
Valid prediction for GlimmerHMM_glimmerT_51496-T1
Valid prediction for GeneMark_model.89613_t
Valid prediction for GeneMark_model.89627_t
Valid prediction for GeneMark_model.89618_t
Valid prediction for GeneMark_model.89634_t
Valid prediction for snap_scaffold_22-snap.2426-T1
Valid prediction for GeneMark_model.89628_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12307, rend_intergenic: 3312  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16439, rend_intergenic: 12727  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35645, rend_intergenic: 19212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42981, rend_intergenic: 35655  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45051, rend_intergenic: 43066  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62325, rend_intergenic: 46715  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69246, rend_intergenic: 64434  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96596, rend_intergenic: 69394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99231, rend_intergenic: 97618  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103514, rend_intergenic: 99674  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106691, rend_intergenic: 104621  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109078, rend_intergenic: 106802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114933, rend_intergenic: 112422  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123351, rend_intergenic: 120242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128766, rend_intergenic: 123558  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164544, rend_intergenic: 139337  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169002, rend_intergenic: 165373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 173788
-exon list size: 632


building trellis

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52.7    
52.8    
53.0    
53.2    
53.3    
53.5    
53.6    
53.8    
53.9    
54.1    
54.3    
54.4    
54.6    
54.7    
54.9    
55.0    
55.2    
55.4    
55.5    
55.7    
55.8    
56.0    
56.2    
56.3    
56.5    
56.6    
56.8    
56.9    
57.1    
57.3    
57.4    
57.6    
57.7    
57.9    
58.0    
58.2    
58.4    
58.5    
58.7    
58.8    
59.0    
59.1    
59.3    
59.5    
59.6    
59.8    
59.9    
60.1    
60.3    
60.4    
60.6    
60.7    
60.9    
61.0    
61.2    
61.4    
61.5    
61.7    
61.8    
62.0    
62.1    
62.3    
62.5    
62.6    
62.8    
62.9    
63.1    
63.2    
63.4    
63.6    
63.7    
63.9    
64.0    
64.2    
64.4    
64.5    
64.7    
64.8    
65.0    
65.1    
65.3    
65.5    
65.6    
65.8    
65.9    
66.1    
66.2    
66.4    
66.6    
66.7    
66.9    
67.0    
67.2    
67.4    
67.5    
67.7    
67.8    
68.0    
68.1    
68.3    
68.5    
68.6    
68.8    
68.9    
69.1    
69.2    
69.4    
69.6    
69.7    
69.9    
70.0    
70.2    
70.3    
70.5    
70.7    
70.8    
71.0    
71.1    
71.3    
71.5    
71.6    
71.8    
71.9    
72.1    
72.2    
72.4    
72.6    
72.7    
72.9    
73.0    
73.2    
73.3    
73.5    
73.7    
73.8    
74.0    
74.1    
74.3    
74.4    
74.6    
74.8    
74.9    
75.1    
75.2    
75.4    
75.6    
75.7    
75.9    
76.0    
76.2    
76.3    
76.5    
76.7    
76.8    
77.0    
77.1    
77.3    
77.4    
77.6    
77.8    
77.9    
78.1    
78.2    
78.4    
78.5    
78.7    
78.9    
79.0    
79.2    
79.3    
79.5    
79.7    
79.8    
80.0    
80.1    
80.3    
80.4    
80.6    
80.8    
80.9    
81.1    
81.2    
81.4    
81.5    
81.7    
81.9    
82.0    
82.2    
82.3    
82.5    
82.6    
82.8    
83.0    
83.1    
83.3    
83.4    
83.6    
83.8    
83.9    
84.1    
84.2    
84.4    
84.5    
84.7    
84.9    
85.0    
85.2    
85.3    
85.5    
85.6    
85.8    
86.0    
86.1    
86.3    
86.4    
86.6    
86.8    
86.9    
87.1    
87.2    
87.4    
87.5    
87.7    
87.9    
88.0    
88.2    
88.3    
88.5    
88.6    
88.8    
89.0    
89.1    
89.3    
89.4    
89.6    
89.7    
89.9    
90.1    
90.2    
90.4    
90.5    
90.7    
90.9    
91.0    
91.2    
91.3    
91.5    
91.6    
91.8    
92.0    
92.1    
92.3    
92.4    
92.6    
92.7    
92.9    
93.1    
93.2    
93.4    
93.5    
93.7    
93.8    
94.0    
94.2    
94.3    
94.5    
94.6    
94.8    
95.0    
95.1    
95.3    
95.4    
95.6    
95.7    
95.9    
96.1    
96.2    
96.4    
96.5    
96.7    
96.8    
97.0    
97.2    
97.3    
97.5    
97.6    
97.8    
97.9    
98.1    
98.3    
98.4    
98.6    
98.7    
98.9    
99.1    
99.2    
99.4    
99.5    
99.7    
99.8    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 12307, rend_intergenic: 3312  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16439, rend_intergenic: 12727  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35645, rend_intergenic: 19212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42981, rend_intergenic: 35655  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45051, rend_intergenic: 43066  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62325, rend_intergenic: 46715  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69246, rend_intergenic: 64434  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96596, rend_intergenic: 69394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99231, rend_intergenic: 97618  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103514, rend_intergenic: 99674  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106691, rend_intergenic: 104621  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109078, rend_intergenic: 106802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114933, rend_intergenic: 112422  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123351, rend_intergenic: 120242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128766, rend_intergenic: 123558  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164544, rend_intergenic: 139337  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169002, rend_intergenic: 165373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support