-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_11373164-11598181 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for pasa_asmbl_29676.p1 Valid prediction for snap_scaffold_22-snap.2397-T1 Valid prediction for snap_scaffold_22-snap.2373-T1 Couldn't classify 167536, 167631 Couldn't classify 168127, 168245 Sorry, prediction pasa_asmbl_29694.p1 fails validation. (TTC) CT 167536-167631 GT AGG (GGT) AG 167795-167921 GT AGG (CTC) AG 168127-168245 AG CCA -recovered pasa_asmbl_29694.p1, internal, 167795, 167921 Couldn't classify 166969, 167472 Sorry, prediction pasa_asmbl_29761.p1 fails validation. (AGA) AA 166969-167472 CC ACC Couldn't classify 93644, 93834 Sorry, prediction pasa_asmbl_29819.p1 fails validation. (GTG) GT 93644-93834 GT GTG (GGA) AG 94014-94118 GT AAG (GCC) AG 95479-95604 GT GTG (GGG) AG 95923-96064 GT AGG (GGG) AG 96233-96346 GT TGG (GAC) AG 96467-96538 GT AGG (CCC) AG 97164-97268 GT CGG (GAT) AG 97596-97742 GT AGG (GCC) AG 98115-98240 GT AGG (GGC) AG 98387-98542 GC AGG -recovered pasa_asmbl_29819.p1, terminal, 98387, 98542 -recovered pasa_asmbl_29819.p1, internal, 94014, 94118 -recovered pasa_asmbl_29819.p1, internal, 95479, 95604 -recovered pasa_asmbl_29819.p1, internal, 95923, 96064 -recovered pasa_asmbl_29819.p1, internal, 96233, 96346 -recovered pasa_asmbl_29819.p1, internal, 96467, 96538 -recovered pasa_asmbl_29819.p1, internal, 97164, 97268 -recovered pasa_asmbl_29819.p1, internal, 97596, 97742 -recovered pasa_asmbl_29819.p1, internal, 98115, 98240 -recovered pasa_asmbl_29819.p1, internal, 98387, 98542 Valid prediction for GeneMark_model.89560_t Valid prediction for snap_scaffold_22-snap.2358-T1 Valid prediction for GeneMark_model.89572_t Valid prediction for GeneMark_model.89583_t Valid prediction for snap_scaffold_22-snap.2386-T1 Valid prediction for GeneMark_model.89570_t Valid prediction for Augustus_model.g34550.t1 Valid prediction for GlimmerHMM_glimmerT_51472-T1 Couldn't classify 135707, 135912 Couldn't classify 136965, 137065 Sorry, prediction pasa_asmbl_29687.p1 fails validation. (CTG) GC 135707-135912 GT AGG (ATT) AG 136081-136171 GT GGG (GGG) AG 136561-136651 GT AGG (GGT) AG 136965-137065 TG GGT -recovered pasa_asmbl_29687.p1, internal, 136081, 136171 -recovered pasa_asmbl_29687.p1, internal, 136561, 136651 Valid prediction for GeneMark_model.89546_t Valid prediction for GlimmerHMM_glimmerT_51455-T1 Valid prediction for GeneMark_model.89607_t Couldn't classify 19844, 20185 Sorry, prediction pasa_asmbl_30498.p2 fails validation. (TCT) TG 19844-20185 CT CTC Valid prediction for snap_scaffold_22-snap.2384-T1 Valid prediction for CodingQuarry_transcript_34250-T1 Valid prediction for GlimmerHMM_glimmerT_51480-T1 Valid prediction for snap_scaffold_22-snap.2376-T1 Valid prediction for GeneMark_model.89537_t Valid prediction for GlimmerHMM_glimmerT_51459-T1 Valid prediction for pasa_asmbl_29689.p1 Valid prediction for GeneMark_model.89596_t Valid prediction for GlimmerHMM_glimmerT_51463-T1 Valid prediction for Augustus_model.g34539.t1 Couldn't classify 175428, 175571 Sorry, prediction pasa_asmbl_29740.p1 fails validation. (TCA) GC 175428-175571 GT AGG (GTT) AG 176237-176394 GT AGG (GTG) AG 176538-176742 GT AGG (GGT) AG 177486-177557 GT AGG (TAT) AG 179548-179711 GT AGG (AGG) AG 180086-180160 GT AGG (GAT) AG 180436-180490 CT AGC -recovered pasa_asmbl_29740.p1, terminal, 180436, 180490 -recovered pasa_asmbl_29740.p1, internal, 176237, 176394 -recovered pasa_asmbl_29740.p1, internal, 176538, 176742 -recovered pasa_asmbl_29740.p1, internal, 177486, 177557 -recovered pasa_asmbl_29740.p1, internal, 179548, 179711 -recovered pasa_asmbl_29740.p1, internal, 180086, 180160 Valid prediction for GeneMark_model.89550_t Valid prediction for snap_scaffold_22-snap.2360-T1 Valid prediction for GeneMark_model.89593_t Valid prediction for GeneMark_model.89567_t Couldn't classify 26918, 26967 Couldn't classify 29301, 29405 Sorry, prediction pasa_asmbl_29667.p1 fails validation. (CCT) GT 26918-26967 GT AGG (CAT) AG 28613-28695 GT TGG (ATG) AG 28785-28835 GT ATG (CGG) AG 29103-29197 GT AAG (CAT) AG 29301-29405 AT GGA add_exon() Sorry, pasa_asmbl_29667.p1 28785-28835-initial-1 is invalid. -recovered pasa_asmbl_29667.p1, initial, 28785, 28835 -recovered pasa_asmbl_29667.p1, internal, 28613, 28695 -recovered pasa_asmbl_29667.p1, internal, 28785, 28835 -recovered pasa_asmbl_29667.p1, internal, 29103, 29197 Valid prediction for CodingQuarry_transcript_34247-T1 Valid prediction for snap_scaffold_22-snap.2363-T1 Valid prediction for GeneMark_model.89540_t Valid prediction for GlimmerHMM_glimmerT_51477-T1 Valid prediction for GeneMark_model.89569_t Valid prediction for snap_scaffold_22-snap.2366-T1 Valid prediction for snap_scaffold_22-snap.2370-T1 Valid prediction for GeneMark_model.89558_t Valid prediction for GlimmerHMM_glimmerT_51473-T1 Valid prediction for GeneMark_model.89544_t Valid prediction for GeneMark_model.89595_t Couldn't classify 145257, 145305 Sorry, prediction pasa_asmbl_29688.p1 fails validation. (AGA) CG 145257-145305 GT AGG (GAT) AG 145581-145711 GT CGG (GCA) AG 148139-148319 GT GGG (CCC) AG 148531-148628 CC GAC -recovered pasa_asmbl_29688.p1, terminal, 148531, 148628 -recovered pasa_asmbl_29688.p1, internal, 145581, 145711 -recovered pasa_asmbl_29688.p1, internal, 148139, 148319 Couldn't classify 166474, 166998 Sorry, prediction pasa_asmbl_29693.p1 fails validation. (AGA) AG 166474-166998 AG AGA Valid prediction for GlimmerHMM_glimmerT_51471-T1 Valid prediction for GeneMark_model.89605_t Valid prediction for snap_scaffold_22-snap.2403-T1 Valid prediction for GlimmerHMM_glimmerT_51479-T1 Valid prediction for GeneMark_model.89581_t Valid prediction for snap_scaffold_22-snap.2382-T1 Valid prediction for GlimmerHMM_glimmerT_51466-T1 Valid prediction for GlimmerHMM_glimmerT_51481-T1 Valid prediction for CodingQuarry_transcript_34248-T1 Valid prediction for GeneMark_model.89563_t Valid prediction for CodingQuarry_transcript_34244-T1 Valid prediction for snap_scaffold_22-snap.2369-T1 Valid prediction for GlimmerHMM_glimmerT_51483-T1 Valid prediction for HiQ_model.g34548.t1 Valid prediction for CodingQuarry_transcript_34252-T1 Valid prediction for GeneMark_model.89586_t Valid prediction for GeneMark_model.89577_t Valid prediction for CodingQuarry_transcript_34251-T1 Valid prediction for GeneMark_model.89579_t Valid prediction for GlimmerHMM_glimmerT_51482-T1 Valid prediction for CodingQuarry_transcript_34243-T1 Valid prediction for GeneMark_model.89590_t Valid prediction for HiQ_model.g34547.t1 Valid prediction for GlimmerHMM_glimmerT_51461-T1 Valid prediction for snap_scaffold_22-snap.2379-T1 Valid prediction for snap_scaffold_22-snap.2390-T1 Couldn't classify 175151, 175263 Sorry, prediction pasa_asmbl_29695.p1 fails validation. (ATG) AG 171063-171081 GT AGG (ATA) AG 171792-171952 GT AGG (TCG) AG 173452-173630 GT AGG (GAC) AG 173926-174004 GT TGG (ATG) AG 174464-174692 GT AGG (GTT) AG 175151-175263 TC CCT -recovered pasa_asmbl_29695.p1, initial, 171063, 171081 -recovered pasa_asmbl_29695.p1, initial, 174464, 174692 add_exon() Sorry, pasa_asmbl_29695.p1 171063-171081-terminal-3 is invalid. -recovered pasa_asmbl_29695.p1, terminal, 171063, 171081 -recovered pasa_asmbl_29695.p1, internal, 171063, 171081 -recovered pasa_asmbl_29695.p1, internal, 171792, 171952 -recovered pasa_asmbl_29695.p1, internal, 173452, 173630 -recovered pasa_asmbl_29695.p1, internal, 173926, 174004 -recovered pasa_asmbl_29695.p1, internal, 174464, 174692 Valid prediction for GeneMark_model.89588_t Valid prediction for GeneMark_model.89602_t Valid prediction for snap_scaffold_22-snap.2377-T1 Valid prediction for GeneMark_model.89576_t Valid prediction for GeneMark_model.89597_t Valid prediction for GlimmerHMM_glimmerT_51487-T1 Couldn't classify 77477, 77535 Couldn't classify 78733, 78857 Sorry, prediction pasa_asmbl_29674.p1 fails validation. (TCT) GG 77477-77535 GT AGG (GTT) AG 77628-77677 GT TGG (GAA) AG 78319-78618 GT AGG (CAC) AG 78733-78857 CC GTC -recovered pasa_asmbl_29674.p1, internal, 77628, 77677 -recovered pasa_asmbl_29674.p1, internal, 78319, 78618 Valid prediction for GeneMark_model.89548_t Valid prediction for GeneMark_model.89565_t Valid prediction for snap_scaffold_22-snap.2357-T1 Couldn't classify 29797, 29882 Sorry, prediction pasa_asmbl_29669.p1 fails validation. (TCT) CT 29797-29882 GT AGG (CCA) AG 30156-30281 GT AGG (AGC) AG 30454-30572 GT AGG (TGG) AG 30694-30935 GA AAG -recovered pasa_asmbl_29669.p1, terminal, 30694, 30935 -recovered pasa_asmbl_29669.p1, internal, 30156, 30281 -recovered pasa_asmbl_29669.p1, internal, 30454, 30572 Valid prediction for CodingQuarry_transcript_34245-T1 Valid prediction for Augustus_model.g34542.t1 Valid prediction for GlimmerHMM_glimmerT_51465-T1 Valid prediction for HiQ_model.g34546.t1 Valid prediction for GlimmerHMM_glimmerT_51457-T1 Valid prediction for GeneMark_model.89591_t Valid prediction for pasa_asmbl_29681.p1 Couldn't classify 165686, 166119 Sorry, prediction pasa_asmbl_29692.p1 fails validation. (ATG) TG 163395-163428 GT CGG (ACT) AG 163568-163674 GT AGG (GAA) AG 163772-163839 GT AGG (GCC) AG 163924-164059 GT AGG (TGT) AG 164385-164456 GT AGG (AAC) AG 164599-164746 GT GTG (TCC) AG 164841-164960 GT AGG (TGT) AG 165686-166119 TA CGT -recovered pasa_asmbl_29692.p1, initial, 163395, 163428 -recovered pasa_asmbl_29692.p1, internal, 163568, 163674 -recovered pasa_asmbl_29692.p1, internal, 163772, 163839 -recovered pasa_asmbl_29692.p1, internal, 163924, 164059 -recovered pasa_asmbl_29692.p1, internal, 164385, 164456 -recovered pasa_asmbl_29692.p1, internal, 164599, 164746 -recovered pasa_asmbl_29692.p1, internal, 164841, 164960 Valid prediction for GlimmerHMM_glimmerT_51469-T1 Valid prediction for Augustus_model.g34553.t1 Valid prediction for GlimmerHMM_glimmerT_51467-T1 Valid prediction for pasa_asmbl_29718.p1 Valid prediction for snap_scaffold_22-snap.2387-T1 Couldn't classify 47614, 47702 Couldn't classify 49740, 49791 Sorry, prediction pasa_asmbl_29670.p1 fails validation. (CGG) GG 47614-47702 GT AGG (AGC) AG 48409-48531 GT CGG (CGA) AG 48641-48751 GT TGG (GGA) AG 49740-49791 GG GGG -recovered pasa_asmbl_29670.p1, internal, 48409, 48531 -recovered pasa_asmbl_29670.p1, internal, 48641, 48751 Valid prediction for snap_scaffold_22-snap.2392-T1 Valid prediction for Augustus_model.g34551.t1 Valid prediction for snap_scaffold_22-snap.2401-T1 Valid prediction for GeneMark_model.89562_t Valid prediction for GeneMark_model.89556_t Valid prediction for HiQ_model.g34541.t1 Valid prediction for GeneMark_model.89542_t Valid prediction for GeneMark_model.89554_t Valid prediction for snap_scaffold_22-snap.2381-T1 Valid prediction for snap_scaffold_22-snap.2368-T1 Valid prediction for Augustus_model.g34543.t1 Valid prediction for GeneMark_model.89600_t Couldn't classify 118335, 118385 Sorry, prediction GeneMark_model.89574_t fails validation. (ATG) AC 118004-118010 GT GAG (GAG) AG 118051-118228 GC GAG (AGG) AG 118250-118261 GT AGG (AGA) AG 118290-118310 GT GAG (AGC) AG 118335-118385 GT GAG -recovered GeneMark_model.89574_t, initial, 118004, 118010 -recovered GeneMark_model.89574_t, internal, 118051, 118228 -recovered GeneMark_model.89574_t, internal, 118250, 118261 -recovered GeneMark_model.89574_t, internal, 118290, 118310 -recovered GeneMark_model.89574_t, internal, 118335, 118385 Valid prediction for GeneMark_model.89584_t Valid prediction for GlimmerHMM_glimmerT_51464-T1 Valid prediction for GlimmerHMM_glimmerT_51484-T1 Valid prediction for GlimmerHMM_glimmerT_51476-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g34552.t1 Valid prediction for snap_scaffold_22-snap.2388-T1 Valid prediction for snap_scaffold_22-snap.2389-T1 Valid prediction for GeneMark_model.89589_t Valid prediction for GlimmerHMM_glimmerT_51462-T1 Valid prediction for snap_scaffold_22-snap.2394-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for snap_scaffold_22-snap.2383-T1 Couldn't classify 4126, 4185 Couldn't classify 5577, 5852 Sorry, prediction pasa_asmbl_30511.p1 fails validation. (CCC) CC 4126-4185 GT CGG (GGC) AG 5577-5852 TA TGT Valid prediction for GeneMark_model.89538_t Valid prediction for HiQ_model.g34549.t1 Valid prediction for CodingQuarry_transcript_34253-T1 Valid prediction for Augustus_model.g34538.t1 Valid prediction for snap_scaffold_22-snap.2399-T1 Valid prediction for GlimmerHMM_glimmerT_51488-T1 Valid prediction for snap_scaffold_22-snap.2361-T1 Valid prediction for snap_scaffold_22-snap.2380-T1 Valid prediction for GeneMark_model.89606_t Couldn't classify 100364, 100417 Sorry, prediction GeneMark_model.89575_t fails validation. (ATG) GG 99299-99310 GC CTG (CTG) AG 99331-99503 GT GAG (AGG) AG 99531-99561 GT AAG (ACT) AG 99745-99791 GT GAG (GGA) AG 99889-100053 GT GGG (CAC) AG 100075-100200 GT GGG (GTA) AG 100364-100417 GT AGG -recovered GeneMark_model.89575_t, initial, 99299, 99310 -recovered GeneMark_model.89575_t, internal, 99331, 99503 -recovered GeneMark_model.89575_t, internal, 99531, 99561 -recovered GeneMark_model.89575_t, internal, 99745, 99791 -recovered GeneMark_model.89575_t, internal, 99889, 100053 -recovered GeneMark_model.89575_t, internal, 100075, 100200 -recovered GeneMark_model.89575_t, internal, 100364, 100417 Valid prediction for CodingQuarry_transcript_34246-T1 Valid prediction for CodingQuarry_transcript_34249-T1 Valid prediction for snap_scaffold_22-snap.2378-T1 Valid prediction for GlimmerHMM_glimmerT_51470-T1 Valid prediction for pasa_asmbl_30452.p1 Valid prediction for GeneMark_model.89541_t Valid prediction for CodingQuarry_transcript_34254-T1 Valid prediction for GeneMark_model.89603_t Valid prediction for GeneMark_model.89582_t Valid prediction for GlimmerHMM_glimmerT_51485-T1 Valid prediction for GlimmerHMM_glimmerT_51474-T1 Couldn't classify 201660, 201821 Couldn't classify 202562, 203446 Sorry, prediction pasa_asmbl_30445.p1 fails validation. (GTG) AG 201660-201821 GT AGG (GTT) AG 202085-202432 GT AGG (GAC) AG 202562-203446 CG GGC -recovered pasa_asmbl_30445.p1, internal, 201660, 201821 -recovered pasa_asmbl_30445.p1, internal, 202085, 202432 Couldn't classify 2659, 4005 Sorry, prediction pasa_asmbl_30456.p1 fails validation. (ATG) CG 2659-4005 GA AAG Valid prediction for Augustus_model.g34537.t1 Valid prediction for snap_scaffold_22-snap.2393-T1 Valid prediction for GlimmerHMM_glimmerT_51460-T1 Valid prediction for Augustus_model.g34544.t1 Valid prediction for GlimmerHMM_glimmerT_51475-T1 Couldn't classify 183703, 183820 Couldn't classify 187552, 187675 Sorry, prediction pasa_asmbl_30446.p1 fails validation. (GGG) AG 183703-183820 GT CTG (GCA) AG 185871-185947 GT CGG (AGT) AG 186412-186591 GT TGG (CTG) AG 186941-187185 GT AGG (GAC) AG 187552-187675 GG AGG -recovered pasa_asmbl_30446.p1, internal, 183703, 183820 -recovered pasa_asmbl_30446.p1, internal, 185871, 185947 -recovered pasa_asmbl_30446.p1, internal, 186412, 186591 -recovered pasa_asmbl_30446.p1, internal, 186941, 187185 Valid prediction for GeneMark_model.89557_t Valid prediction for snap_scaffold_22-snap.2367-T1 Valid prediction for GeneMark_model.89553_t Valid prediction for GlimmerHMM_glimmerT_51478-T1 Couldn't classify 120737, 120823 Sorry, prediction pasa_asmbl_30450.p1 fails validation. (GCG) TG 120737-120823 GT GGG (ACC) AG 121149-121216 GT GGG (CGC) AG 121321-121452 GT AGG (CAT) AG 121697-121826 GT AGG (GTG) AG 121931-122075 GT TGG (CCC) AG 122797-122924 AC AGA -recovered pasa_asmbl_30450.p1, terminal, 122797, 122924 -recovered pasa_asmbl_30450.p1, internal, 121149, 121216 -recovered pasa_asmbl_30450.p1, internal, 121321, 121452 -recovered pasa_asmbl_30450.p1, internal, 121697, 121826 -recovered pasa_asmbl_30450.p1, internal, 121931, 122075 Valid prediction for snap_scaffold_22-snap.2391-T1 Valid prediction for snap_scaffold_22-snap.2365-T1 Valid prediction for GeneMark_model.89573_t Valid prediction for GeneMark_model.89568_t Valid prediction for GeneMark_model.89564_t Couldn't classify 27239, 27337 Sorry, prediction pasa_asmbl_30453.p1 fails validation. (ATT) AC 27239-27337 GT TGG (GGA) AG 27975-28124 GT ACG (GTG) AG 29968-30161 GT GGG (GCC) AG 30419-30577 GT GAG (GGA) AG 30779-30884 CC GAC -recovered pasa_asmbl_30453.p1, terminal, 30779, 30884 -recovered pasa_asmbl_30453.p1, internal, 27975, 28124 -recovered pasa_asmbl_30453.p1, internal, 29968, 30161 -recovered pasa_asmbl_30453.p1, internal, 30419, 30577 Valid prediction for snap_scaffold_22-snap.2395-T1 Valid prediction for GeneMark_model.89561_t Valid prediction for GeneMark_model.89592_t Couldn't classify 218396, 218445 Sorry, prediction pasa_asmbl_30441.p1 fails validation. (AAT) AC 218396-218445 GT AGG (GTT) AG 218621-218956 GT AGG (GGA) AG 219323-219551 AC AGA -recovered pasa_asmbl_30441.p1, terminal, 219323, 219551 -recovered pasa_asmbl_30441.p1, internal, 218621, 218956 Couldn't classify 199886, 200067 Couldn't classify 200617, 200700 Sorry, prediction pasa_asmbl_30480.p1 fails validation. (GGT) TA 199886-200067 GT AGG (ACT) AG 200218-200290 GT TGG (TAT) AG 200617-200700 AT AAA -recovered pasa_asmbl_30480.p1, internal, 200218, 200290 Valid prediction for snap_scaffold_22-snap.2396-T1 Valid prediction for GeneMark_model.89608_t Valid prediction for GlimmerHMM_glimmerT_51486-T1 Valid prediction for snap_scaffold_22-snap.2402-T1 Valid prediction for snap_scaffold_22-snap.2375-T1 Valid prediction for GeneMark_model.89578_t Valid prediction for snap_scaffold_22-snap.2398-T1 Valid prediction for snap_scaffold_22-snap.2371-T1 Valid prediction for Augustus_model.g34540.t1 Valid prediction for GeneMark_model.89571_t Valid prediction for GeneMark_model.89587_t Valid prediction for snap_scaffold_22-snap.2400-T1 Valid prediction for GeneMark_model.89604_t Valid prediction for GeneMark_model.89545_t Valid prediction for snap_scaffold_22-snap.2364-T1 Valid prediction for snap_scaffold_22-snap.2385-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.89547_t Valid prediction for GeneMark_model.89549_t Valid prediction for snap_scaffold_22-snap.2359-T1 Valid prediction for GeneMark_model.89551_t Valid prediction for GeneMark_model.89599_t Couldn't classify 204724, 205160 Couldn't classify 205197, 205263 Sorry, prediction CodingQuarry_transcript_34241-T1 fails validation. (ATG) TT 204724-205160 CA GAC (GGC) GA 205197-205263 GA AGG Valid prediction for Augustus_model.g34536.t1 Valid prediction for GeneMark_model.89580_t Valid prediction for GeneMark_model.89594_t Valid prediction for snap_scaffold_22-snap.2362-T1 Valid prediction for GeneMark_model.89559_t Valid prediction for GlimmerHMM_glimmerT_51454-T1 Valid prediction for Augustus_model.g34545.t1 Valid prediction for GeneMark_model.89601_t Valid prediction for GeneMark_model.89585_t Valid prediction for GlimmerHMM_glimmerT_51468-T1 Valid prediction for snap_scaffold_22-snap.2372-T1 Valid prediction for GlimmerHMM_glimmerT_51458-T1 Valid prediction for GeneMark_model.89598_t Valid prediction for snap_scaffold_22-snap.2374-T1 Valid prediction for GlimmerHMM_glimmerT_51456-T1 Valid prediction for GeneMark_model.89566_t Valid prediction for GeneMark_model.89555_t Valid prediction for GeneMark_model.89539_t Valid prediction for GeneMark_model.89543_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12610, rend_intergenic: 9168 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 16844, rend_intergenic: 13798 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 19388, rend_intergenic: 17671 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 41320, rend_intergenic: 19756 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59060, rend_intergenic: 48413 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 70702, rend_intergenic: 67568 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 79449, rend_intergenic: 72911 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 99008, rend_intergenic: 88882 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103874, rend_intergenic: 99963 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108026, rend_intergenic: 105340 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 132779, rend_intergenic: 108576 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 149429, rend_intergenic: 133590 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157996, rend_intergenic: 151001 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162146, rend_intergenic: 161285 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 170545, rend_intergenic: 162689 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 180490, rend_intergenic: 170633 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 195028, rend_intergenic: 188625 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202681, rend_intergenic: 197004 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 212505, rend_intergenic: 202708 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 213660, rend_intergenic: 212728 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 217050, rend_intergenic: 215741 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 222351, rend_intergenic: 217727 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 225018 -exon list size: 1067 building trellis 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.2 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.6 3.7 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.9 5.0 5.1 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.5 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 7.9 8.0 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.4 9.5 9.6 9.7 9.8 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.9 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.8 11.9 12.0 12.1 12.2 12.3 12.3 12.4 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.5 13.6 13.7 13.8 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.2 15.3 15.4 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.4 16.5 16.6 16.7 16.7 16.8 16.9 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.1 18.1 18.2 18.3 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.5 19.6 19.6 19.7 19.8 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.0 21.0 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.9 23.9 24.0 24.1 24.2 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.3 25.4 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.6 26.7 26.8 26.8 26.9 27.0 27.1 27.2 27.3 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.3 28.4 28.5 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.3 29.4 29.5 29.6 29.7 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.2 31.3 31.4 31.5 31.6 31.7 31.8 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.6 32.7 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.6 33.7 33.8 33.9 34.0 34.1 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.1 35.2 35.3 35.4 35.5 35.5 35.6 35.7 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.7 36.8 36.9 37.0 37.0 37.1 37.2 37.3 37.4 37.5 37.6 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.4 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.4 39.5 39.6 39.7 39.8 39.9 39.9 40.0 40.1 40.2 40.3 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.3 41.4 41.5 41.6 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.8 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.7 43.8 43.9 44.0 44.1 44.2 44.2 44.3 44.4 44.5 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.7 45.7 45.8 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.8 47.9 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.6 48.7 48.8 48.9 49.0 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 50.9 51.0 51.1 51.2 51.3 51.4 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.9 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.2 54.3 54.3 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.5 55.6 55.7 55.8 55.8 55.9 56.0 56.1 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.2 57.3 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.4 58.5 58.6 58.7 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.7 59.8 59.9 60.0 60.1 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.6 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.4 62.5 62.6 62.7 62.8 62.9 63.0 63.0 63.1 63.2 63.3 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.3 64.4 64.5 64.5 64.6 64.7 64.8 64.9 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 65.9 66.0 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.3 67.4 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.2 68.3 68.4 68.5 68.6 68.7 68.8 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.3 70.4 70.5 70.6 70.7 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.5 71.6 71.7 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.8 72.9 73.0 73.1 73.2 73.2 73.3 73.4 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.6 74.7 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.8 75.9 76.0 76.1 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.0 79.0 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.2 80.3 80.4 80.4 80.5 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.7 81.8 81.9 81.9 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.1 83.2 83.3 83.3 83.4 83.5 83.6 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.6 84.7 84.8 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.2 86.3 86.4 86.5 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.6 87.7 87.7 87.8 87.9 88.0 88.1 88.2 88.3 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.1 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.2 90.3 90.4 90.5 90.6 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.0 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.5 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.3 94.4 94.5 94.6 94.7 94.8 94.9 94.9 95.0 95.1 95.2 95.3 95.4 95.5 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.3 96.4 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.7 97.8 97.8 97.9 98.0 98.1 98.2 98.3 98.4 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.3 99.4 99.5 99.6 99.7 99.8 99.9 -found 55 predictions from path traversal Error with prediction: snap lend_intergenic: 12610, rend_intergenic: 9168 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 16844, rend_intergenic: 13798 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 19388, rend_intergenic: 17671 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 41320, rend_intergenic: 19756 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59060, rend_intergenic: 48413 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 70702, rend_intergenic: 67568 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 79449, rend_intergenic: 72911 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 99008, rend_intergenic: 88882 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103874, rend_intergenic: 99963 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108026, rend_intergenic: 105340 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 132779, rend_intergenic: 108576 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 149429, rend_intergenic: 133590 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157996, rend_intergenic: 151001 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162146, rend_intergenic: 161285 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 170545, rend_intergenic: 162689 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 180490, rend_intergenic: 170633 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 195028, rend_intergenic: 188625 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202681, rend_intergenic: 197004 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 212505, rend_intergenic: 202708 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 213660, rend_intergenic: 212728 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 217050, rend_intergenic: 215741 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 222351, rend_intergenic: 217727 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 35 predictions persist after filtering for low support