-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_10993734-11375337 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_51430-T1 Valid prediction for snap_scaffold_22-snap.2341-T1 Valid prediction for GeneMark_model.89475_t Valid prediction for GeneMark_model.89515_t Valid prediction for GeneMark_model.89494_t Valid prediction for snap_scaffold_22-snap.2287-T1 Valid prediction for GlimmerHMM_glimmerT_51414-T1 Valid prediction for snap_scaffold_22-snap.2329-T1 Valid prediction for snap_scaffold_22-snap.2350-T1 Valid prediction for GeneMark_model.89473_t Valid prediction for GeneMark_model.89471_t Valid prediction for snap_scaffold_22-snap.2283-T1 Valid prediction for GlimmerHMM_glimmerT_51451-T1 Valid prediction for Augustus_model.g34510.t1 Valid prediction for GeneMark_model.89447_t Valid prediction for GeneMark_model.89448_t Valid prediction for GlimmerHMM_glimmerT_51426-T1 Valid prediction for Augustus_model.g34519.t1 Valid prediction for GeneMark_model.89492_t Valid prediction for CodingQuarry_transcript_34232-T1 Couldn't classify 74629, 74735 Couldn't classify 77736, 77848 Sorry, prediction pasa_asmbl_29776.p1 fails validation. (TCC) CT 74629-74735 GT AGG (AAG) AG 75206-75296 GT AGG (GTA) AG 77286-77364 GT GGG (GCG) AG 77736-77848 GT AGG -recovered pasa_asmbl_29776.p1, internal, 75206, 75296 -recovered pasa_asmbl_29776.p1, internal, 77286, 77364 -recovered pasa_asmbl_29776.p1, internal, 77736, 77848 Valid prediction for snap_scaffold_22-snap.2328-T1 Valid prediction for snap_scaffold_22-snap.2333-T1 Valid prediction for GlimmerHMM_glimmerT_51443-T1 Valid prediction for GeneMark_model.89467_t Valid prediction for Augustus_model.g34520.t1 Valid prediction for snap_scaffold_22-snap.2297-T1 Valid prediction for GeneMark_model.89485_t Valid prediction for snap_scaffold_22-snap.2345-T1 Couldn't classify 6609, 6656 Couldn't classify 8636, 8914 Sorry, prediction pasa_asmbl_29658.p1 fails validation. (GTG) GT 6609-6656 GT AGG (GTA) AG 8636-8914 CA AGC Valid prediction for GlimmerHMM_glimmerT_51444-T1 Valid prediction for snap_scaffold_22-snap.2309-T1 Valid prediction for GeneMark_model.89525_t Valid prediction for snap_scaffold_22-snap.2338-T1 Valid prediction for snap_scaffold_22-snap.2295-T1 Valid prediction for GeneMark_model.89481_t Valid prediction for Augustus_model.g34513.t1 Couldn't classify 79301, 79477 Couldn't classify 79770, 79901 Sorry, prediction pasa_asmbl_29751.p2 fails validation. (AGG) TC 79301-79477 GT AGG (GTG) AG 79770-79901 GC TAG -recovered pasa_asmbl_29751.p2, internal, 79770, 79901 Valid prediction for GlimmerHMM_glimmerT_51440-T1 Valid prediction for GeneMark_model.89490_t Valid prediction for GeneMark_model.89530_t Valid prediction for snap_scaffold_22-snap.2316-T1 Valid prediction for snap_scaffold_22-snap.2322-T1 Sorry, intron length (8) is less than minimum required (10) Valid prediction for GeneMark_model.89450_t Valid prediction for GeneMark_model.89453_t Valid prediction for GeneMark_model.89518_t Valid prediction for snap_scaffold_22-snap.2308-T1 Couldn't classify 40405, 40506 Sorry, prediction pasa_asmbl_29807.p2 fails validation. (ATG) CC 39430-39590 GT AGG (GGA) AG 39974-40112 GT AGG (GTG) AG 40405-40506 GA GAG -recovered pasa_asmbl_29807.p2, initial, 39430, 39590 -recovered pasa_asmbl_29807.p2, internal, 39974, 40112 Valid prediction for GeneMark_model.89495_t Couldn't classify 201470, 201606 Sorry, prediction GeneMark_model.89488_t fails validation. (GGG) AG 201470-201606 GT ATG (TAG) AG 202093-202187 GT CAG (GAC) AG 202607-202623 GT AGG (GCA) AG 202713-202751 GT AGG (GAG) AG 202858-202875 GT GAG (AGA) AG 202898-202951 GC AGG (GAG) AG 202974-202982 GT GGG (GGA) AG 203007-203120 GT GAG (AAG) AG 204635-204653 CC AAC -recovered GeneMark_model.89488_t, terminal, 204635, 204653 -recovered GeneMark_model.89488_t, internal, 201470, 201606 -recovered GeneMark_model.89488_t, internal, 202093, 202187 -recovered GeneMark_model.89488_t, internal, 202607, 202623 -recovered GeneMark_model.89488_t, internal, 202713, 202751 -recovered GeneMark_model.89488_t, internal, 202858, 202875 -recovered GeneMark_model.89488_t, internal, 202898, 202951 -recovered GeneMark_model.89488_t, internal, 202974, 202982 -recovered GeneMark_model.89488_t, internal, 203007, 203120 Valid prediction for snap_scaffold_22-snap.2335-T1 Valid prediction for snap_scaffold_22-snap.2304-T1 Valid prediction for Augustus_model.g34509.t1 Valid prediction for snap_scaffold_22-snap.2320-T1 Valid prediction for GlimmerHMM_glimmerT_51411-T1 Valid prediction for GlimmerHMM_glimmerT_51439-T1 Valid prediction for GeneMark_model.89497_t Valid prediction for GeneMark_model.89510_t Valid prediction for GeneMark_model.89532_t Valid prediction for GeneMark_model.89476_t Valid prediction for Augustus_model.g34502.t1 Valid prediction for snap_scaffold_22-snap.2344-T1 Valid prediction for GeneMark_model.89463_t Valid prediction for GlimmerHMM_glimmerT_51422-T1 Valid prediction for snap_scaffold_22-snap.2340-T1 Valid prediction for snap_scaffold_22-snap.2353-T1 Valid prediction for GeneMark_model.89433_t Valid prediction for snap_scaffold_22-snap.2354-T1 Valid prediction for GeneMark_model.89444_t Valid prediction for GlimmerHMM_glimmerT_51429-T1 Valid prediction for snap_scaffold_22-snap.2351-T1 Valid prediction for snap_scaffold_22-snap.2294-T1 Valid prediction for GlimmerHMM_glimmerT_51421-T1 Couldn't classify 239861, 239904 Couldn't classify 240540, 240642 Sorry, prediction CodingQuarry_transcript_34237-T1 fails validation. (ATG) AG 239861-239904 CG CAC (AGA) AC 240540-240642 CC GAC Valid prediction for Augustus_model.g34504.t1 Valid prediction for snap_scaffold_22-snap.2347-T1 Valid prediction for GeneMark_model.89431_t Valid prediction for Augustus_model.g34522.t1 Valid prediction for GeneMark_model.89469_t Valid prediction for snap_scaffold_22-snap.2286-T1 Valid prediction for GeneMark_model.89536_t Valid prediction for GeneMark_model.89523_t Valid prediction for snap_scaffold_22-snap.2289-T1 Valid prediction for GeneMark_model.89501_t Valid prediction for GeneMark_model.89436_t Valid prediction for snap_scaffold_22-snap.2302-T1 Valid prediction for snap_scaffold_22-snap.2355-T1 Valid prediction for snap_scaffold_22-snap.2352-T1 Valid prediction for snap_scaffold_22-snap.2282-T1 Couldn't classify 238619, 238841 Sorry, prediction pasa_asmbl_29662.p1 fails validation. (ATG) AG 237726-237817 GT AGG (CGC) AG 238619-238841 TG TGT -recovered pasa_asmbl_29662.p1, initial, 237726, 237817 -recovered pasa_asmbl_29662.p1, internal, 237726, 237817 Valid prediction for GeneMark_model.89484_t Valid prediction for GeneMark_model.89499_t Valid prediction for snap_scaffold_22-snap.2327-T1 Valid prediction for GeneMark_model.89466_t Valid prediction for GeneMark_model.89508_t Valid prediction for GeneMark_model.89457_t Valid prediction for GeneMark_model.89459_t Valid prediction for snap_scaffold_22-snap.2348-T1 Couldn't classify 45618, 45749 Sorry, prediction pasa_asmbl_29659.p1 fails validation. (GCC) AG 45618-45749 GT AGG (AGC) AG 45895-46041 GT CCG (GTG) AG 46835-46972 AG AGA -recovered pasa_asmbl_29659.p1, terminal, 46835, 46972 -recovered pasa_asmbl_29659.p1, internal, 45618, 45749 -recovered pasa_asmbl_29659.p1, internal, 45895, 46041 Valid prediction for GeneMark_model.89435_t Valid prediction for snap_scaffold_22-snap.2318-T1 Valid prediction for GeneMark_model.89438_t Valid prediction for Augustus_model.g34533.t1 Valid prediction for snap_scaffold_22-snap.2301-T1 Valid prediction for snap_scaffold_22-snap.2307-T1 Valid prediction for GeneMark_model.89461_t Valid prediction for GeneMark_model.89527_t Valid prediction for GeneMark_model.89478_t Valid prediction for GeneMark_model.89516_t Valid prediction for GlimmerHMM_glimmerT_51438-T1 Valid prediction for Augustus_model.g34506.t1 Valid prediction for GlimmerHMM_glimmerT_51441-T1 Valid prediction for GlimmerHMM_glimmerT_51452-T1 Valid prediction for snap_scaffold_22-snap.2331-T1 Valid prediction for GeneMark_model.89441_t Valid prediction for GlimmerHMM_glimmerT_51416-T1 Valid prediction for GlimmerHMM_glimmerT_51417-T1 Valid prediction for GeneMark_model.89528_t Valid prediction for GeneMark_model.89504_t Valid prediction for snap_scaffold_22-snap.2299-T1 Valid prediction for Augustus_model.g34500.t1 Valid prediction for GeneMark_model.89534_t Valid prediction for GlimmerHMM_glimmerT_51435-T1 Valid prediction for Augustus_model.g34501.t1 Valid prediction for GeneMark_model.89446_t Valid prediction for Augustus_model.g34505.t1 Valid prediction for snap_scaffold_22-snap.2313-T1 Valid prediction for GeneMark_model.89513_t Valid prediction for GlimmerHMM_glimmerT_51420-T1 Valid prediction for snap_scaffold_22-snap.2325-T1 Valid prediction for GeneMark_model.89440_t Valid prediction for GlimmerHMM_glimmerT_51436-T1 Valid prediction for GeneMark_model.89507_t Valid prediction for Augustus_model.g34497.t1 Valid prediction for snap_scaffold_22-snap.2306-T1 Valid prediction for Augustus_model.g34524.t1 Valid prediction for GlimmerHMM_glimmerT_51446-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_34234-T1 Valid prediction for Augustus_model.g34528.t1 Valid prediction for Augustus_model.g34512.t1 Valid prediction for pasa_asmbl_30431.p1 Valid prediction for GlimmerHMM_glimmerT_51432-T1 Valid prediction for Augustus_model.g34526.t1 Valid prediction for GeneMark_model.89451_t Valid prediction for GeneMark_model.89531_t Valid prediction for snap_scaffold_22-snap.2285-T1 Valid prediction for GeneMark_model.89482_t Valid prediction for Augustus_model.g34535.t1 Valid prediction for GeneMark_model.89526_t Couldn't classify 189148, 189300 Sorry, prediction pasa_asmbl_30421.p1 fails validation. (GGT) CA 189148-189300 GT AGG (GTA) AG 189540-189683 GT TGG (GGA) AG 189864-190031 GT AGG (GAC) AG 190690-190831 GT CTG (TAC) AG 191346-191377 CC AGC -recovered pasa_asmbl_30421.p1, terminal, 191346, 191377 -recovered pasa_asmbl_30421.p1, internal, 189540, 189683 -recovered pasa_asmbl_30421.p1, internal, 189864, 190031 -recovered pasa_asmbl_30421.p1, internal, 190690, 190831 Valid prediction for GlimmerHMM_glimmerT_51434-T1 Valid prediction for Augustus_model.g34499.t1 Valid prediction for GeneMark_model.89511_t Valid prediction for GeneMark_model.89503_t Valid prediction for GeneMark_model.89486_t Valid prediction for GlimmerHMM_glimmerT_51419-T1 Valid prediction for GeneMark_model.89470_t Valid prediction for snap_scaffold_22-snap.2298-T1 Valid prediction for Augustus_model.g34517.t1 Valid prediction for CodingQuarry_transcript_34238-T1 Couldn't classify 6725, 6938 Couldn't classify 7172, 7362 Sorry, prediction pasa_asmbl_30440.p1 fails validation. (AGC) GG 6725-6938 GT AGG (GTG) AG 7172-7362 AC AGA Valid prediction for Augustus_model.g34507.t1 Valid prediction for GlimmerHMM_glimmerT_51445-T1 Valid prediction for GeneMark_model.89439_t Valid prediction for snap_scaffold_22-snap.2292-T1 Couldn't classify 105307, 105599 Sorry, prediction pasa_asmbl_30430.p1 fails validation. (ATG) GG 104137-104368 GT GGG (CCG) AG 105307-105599 GA GTG -recovered pasa_asmbl_30430.p1, initial, 104137, 104368 Valid prediction for Augustus_model.g34523.t1 Valid prediction for GlimmerHMM_glimmerT_51415-T1 Valid prediction for GeneMark_model.89506_t Couldn't classify 49060, 49166 Couldn't classify 50020, 50040 Sorry, prediction CodingQuarry_transcript_34239-T1 fails validation. (ATG) CC 47866-47920 GT CTG (CGG) AG 48531-48641 GT TGG (TGT) AG 49060-49166 CT GCC (ACA) AC 50020-50040 GG AAG -recovered CodingQuarry_transcript_34239-T1, initial, 47866, 47920 -recovered CodingQuarry_transcript_34239-T1, internal, 48531, 48641 Valid prediction for GeneMark_model.89535_t Valid prediction for GeneMark_model.89493_t Valid prediction for GeneMark_model.89529_t Valid prediction for snap_scaffold_22-snap.2321-T1 Valid prediction for snap_scaffold_22-snap.2343-T1 Valid prediction for GlimmerHMM_glimmerT_51447-T1 Valid prediction for snap_scaffold_22-snap.2300-T1 Valid prediction for snap_scaffold_22-snap.2324-T1 Valid prediction for GeneMark_model.89496_t Valid prediction for Augustus_model.g34531.t1 Valid prediction for GlimmerHMM_glimmerT_51450-T1 Valid prediction for GlimmerHMM_glimmerT_51437-T1 Valid prediction for GeneMark_model.89432_t Couldn't classify 47420, 47528 Sorry, prediction pasa_asmbl_30514.p1 fails validation. (GAG) CA 47420-47528 GT TGG (GGT) AG 47807-47920 GT CTG (CGG) AG 48531-48641 GT TGG (TGT) AG 49060-49196 GT AGG -recovered pasa_asmbl_30514.p1, terminal, 49060, 49196 -recovered pasa_asmbl_30514.p1, internal, 47807, 47920 -recovered pasa_asmbl_30514.p1, internal, 48531, 48641 -recovered pasa_asmbl_30514.p1, internal, 49060, 49196 Valid prediction for GeneMark_model.89474_t Couldn't classify 56777, 56836 Sorry, prediction GeneMark_model.89521_t fails validation. (ATG) GA 54397-54425 GT GTG (GAG) AG 54824-54997 GT GGG (GGG) AG 55032-55136 GT GAG (AGG) AG 55161-55166 GT AGG (GTT) AG 55194-55217 GT GGG (AGC) AG 55548-55562 GT GTG (AAG) AG 55842-56030 GT GGG (GAA) AG 56777-56836 GT GAG -recovered GeneMark_model.89521_t, initial, 54397, 54425 -recovered GeneMark_model.89521_t, internal, 54824, 54997 -recovered GeneMark_model.89521_t, internal, 55032, 55136 -recovered GeneMark_model.89521_t, internal, 55161, 55166 -recovered GeneMark_model.89521_t, internal, 55194, 55217 -recovered GeneMark_model.89521_t, internal, 55548, 55562 -recovered GeneMark_model.89521_t, internal, 55842, 56030 -recovered GeneMark_model.89521_t, internal, 56777, 56836 Valid prediction for GeneMark_model.89505_t Valid prediction for snap_scaffold_22-snap.2349-T1 Valid prediction for snap_scaffold_22-snap.2337-T1 Valid prediction for snap_scaffold_22-snap.2284-T1 Valid prediction for snap_scaffold_22-snap.2342-T1 Couldn't classify 170063, 170703 Couldn't classify 170857, 172066 Sorry, prediction pasa_asmbl_30424.p1 fails validation. (GGT) GT 170063-170703 GT AGG (CAG) AG 170857-172066 AC TGA Valid prediction for snap_scaffold_22-snap.2281-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for CodingQuarry_transcript_34233-T1 Valid prediction for snap_scaffold_22-snap.2317-T1 Valid prediction for GeneMark_model.89483_t Valid prediction for Augustus_model.g34515.t1 Valid prediction for GeneMark_model.89509_t Valid prediction for GeneMark_model.89437_t Couldn't classify 174073, 174245 Sorry, prediction pasa_asmbl_30423.p1 fails validation. (ATG) GG 172647-172752 GT CGG (AAT) AG 173093-173224 GT AGG (GTT) AG 174073-174245 AT AAA -recovered pasa_asmbl_30423.p1, initial, 172647, 172752 -recovered pasa_asmbl_30423.p1, internal, 173093, 173224 Valid prediction for GeneMark_model.89458_t Valid prediction for Augustus_model.g34525.t1 Valid prediction for GeneMark_model.89455_t Valid prediction for GlimmerHMM_glimmerT_51425-T1 Valid prediction for snap_scaffold_22-snap.2291-T1 Valid prediction for GeneMark_model.89443_t Valid prediction for Augustus_model.g34532.t1 Valid prediction for HiQ_model.g34508.t1 Valid prediction for Augustus_model.g34521.t1 Valid prediction for CodingQuarry_transcript_34240-T1 Valid prediction for Augustus_model.g34530.t1 Valid prediction for snap_scaffold_22-snap.2336-T1 Valid prediction for GeneMark_model.89479_t Valid prediction for Augustus_model.g34498.t1 Valid prediction for GeneMark_model.89500_t Valid prediction for snap_scaffold_22-snap.2290-T1 Valid prediction for GeneMark_model.89449_t Valid prediction for snap_scaffold_22-snap.2312-T1 Valid prediction for GlimmerHMM_glimmerT_51423-T1 Valid prediction for GeneMark_model.89512_t Couldn't classify 64053, 64172 Sorry, prediction GeneMark_model.89520_t fails validation. (GTG) AG 64053-64172 GT AGG (GGA) AG 65320-65505 CT AGC -recovered GeneMark_model.89520_t, terminal, 65320, 65505 -recovered GeneMark_model.89520_t, internal, 64053, 64172 Valid prediction for GeneMark_model.89452_t Couldn't classify 157115, 157207 Sorry, prediction pasa_asmbl_30515.p1 fails validation. (ATG) CC 156515-156661 GT AGG (CTT) AG 156881-157000 GT TGG (ATG) AG 157115-157207 AG ACA -recovered pasa_asmbl_30515.p1, initial, 156515, 156661 -recovered pasa_asmbl_30515.p1, internal, 156881, 157000 Valid prediction for GlimmerHMM_glimmerT_51412-T1 Valid prediction for GeneMark_model.89502_t Valid prediction for GeneMark_model.89460_t Couldn't classify 241295, 241503 Sorry, prediction pasa_asmbl_30505.p1 fails validation. (TTC) CG 241295-241503 GT AAG (GTC) AG 241759-241876 GT AGG (CTG) AG 242519-242672 GT ATG (ACT) AG 242857-243023 GT AGG (AGT) AG 243618-243803 GG GAG -recovered pasa_asmbl_30505.p1, terminal, 243618, 243803 -recovered pasa_asmbl_30505.p1, internal, 241759, 241876 -recovered pasa_asmbl_30505.p1, internal, 242519, 242672 -recovered pasa_asmbl_30505.p1, internal, 242857, 243023 Valid prediction for GeneMark_model.89519_t Valid prediction for CodingQuarry_transcript_34235-T1 Valid prediction for snap_scaffold_22-snap.2334-T1 Valid prediction for GlimmerHMM_glimmerT_51448-T1 Valid prediction for snap_scaffold_22-snap.2346-T1 Valid prediction for GlimmerHMM_glimmerT_51413-T1 Valid prediction for GeneMark_model.89491_t Couldn't classify 37291, 37487 Sorry, prediction pasa_asmbl_30434.p1 fails validation. (ATG) AC 32232-32343 GT AGG (GGA) AG 34471-34854 GT AGG (GTG) AG 37291-37487 GC CGG -recovered pasa_asmbl_30434.p1, initial, 32232, 32343 -recovered pasa_asmbl_30434.p1, internal, 34471, 34854 -recovered pasa_asmbl_30434.p1, internal, 37291, 37487 Valid prediction for GeneMark_model.89524_t Valid prediction for GeneMark_model.89454_t Valid prediction for GeneMark_model.89464_t Valid prediction for Augustus_model.g34514.t1 Valid prediction for snap_scaffold_22-snap.2332-T1 Valid prediction for GeneMark_model.89442_t Valid prediction for Augustus_model.g34518.t1 Valid prediction for Augustus_model.g34503.t1 Valid prediction for snap_scaffold_22-snap.2323-T1 Valid prediction for GlimmerHMM_glimmerT_51433-T1 Valid prediction for snap_scaffold_22-snap.2311-T1 Couldn't classify 168722, 169651 Sorry, prediction pasa_asmbl_30425.p1 fails validation. (GAC) CG 168722-169651 GA CAG Valid prediction for GeneMark_model.89517_t Valid prediction for GeneMark_model.89456_t Valid prediction for GlimmerHMM_glimmerT_51442-T1 Valid prediction for GeneMark_model.89468_t Couldn't classify 8985, 9062 Sorry, prediction pasa_asmbl_30439.p2 fails validation. (CAC) CC 8985-9062 GT AGG (GGC) AG 9145-9306 GT AGG (GAG) AG 9461-9561 GT AGG (GTG) AG 10033-10147 GT TAG (AGT) AG 10421-10548 GT AGG (GAG) AG 10764-10770 AG AGA -recovered pasa_asmbl_30439.p2, terminal, 10764, 10770 -recovered pasa_asmbl_30439.p2, internal, 9145, 9306 -recovered pasa_asmbl_30439.p2, internal, 9461, 9561 -recovered pasa_asmbl_30439.p2, internal, 10033, 10147 -recovered pasa_asmbl_30439.p2, internal, 10421, 10548 Valid prediction for GlimmerHMM_glimmerT_51428-T1 Valid prediction for Augustus_model.g34527.t1 Valid prediction for snap_scaffold_22-snap.2319-T1 Valid prediction for snap_scaffold_22-snap.2303-T1 Valid prediction for snap_scaffold_22-snap.2305-T1 Valid prediction for snap_scaffold_22-snap.2310-T1 Valid prediction for GlimmerHMM_glimmerT_51424-T1 Valid prediction for Augustus_model.g34529.t1 Valid prediction for snap_scaffold_22-snap.2293-T1 Valid prediction for GeneMark_model.89465_t Valid prediction for GlimmerHMM_glimmerT_51418-T1 Valid prediction for GeneMark_model.89522_t Valid prediction for HiQ_model.g34511.t1 Valid prediction for GeneMark_model.89533_t Valid prediction for Augustus_model.g34534.t1 Valid prediction for snap_scaffold_22-snap.2315-T1 Valid prediction for GlimmerHMM_glimmerT_51431-T1 Couldn't classify 254654, 254875 Couldn't classify 255125, 255292 Sorry, prediction pasa_asmbl_30415.p1 fails validation. (AGC) AG 254654-254875 GT ATG (GTA) AG 255125-255292 AC ACA -recovered pasa_asmbl_30415.p1, internal, 254654, 254875 Valid prediction for GlimmerHMM_glimmerT_51449-T1 Valid prediction for GeneMark_model.89434_t Valid prediction for snap_scaffold_22-snap.2288-T1 Valid prediction for snap_scaffold_22-snap.2326-T1 Valid prediction for snap_scaffold_22-snap.2330-T1 Valid prediction for GeneMark_model.89480_t Valid prediction for snap_scaffold_22-snap.2296-T1 Valid prediction for GeneMark_model.89498_t Valid prediction for snap_scaffold_22-snap.2339-T1 Valid prediction for Augustus_model.g34516.t1 Couldn't classify 346451, 346762 Sorry, prediction pasa_asmbl_30414.p2 fails validation. (AAG) GC 346451-346762 CC GAC Couldn't classify 219765, 219879 Sorry, prediction pasa_asmbl_30419.p1 fails validation. (CTC) CT 219765-219879 GT ATG (TGC) AG 222564-222677 GT AGG (CTA) AG 222875-223098 CT AGC add_exon() Sorry, pasa_asmbl_30419.p1 222564-222677-terminal-1 is invalid. -recovered pasa_asmbl_30419.p1, terminal, 222564, 222677 -recovered pasa_asmbl_30419.p1, terminal, 222875, 223098 -recovered pasa_asmbl_30419.p1, internal, 222564, 222677 Valid prediction for GlimmerHMM_glimmerT_51453-T1 Valid prediction for GeneMark_model.89489_t Valid prediction for GeneMark_model.89462_t Valid prediction for GeneMark_model.89477_t Valid prediction for GeneMark_model.89445_t Valid prediction for snap_scaffold_22-snap.2314-T1 Valid prediction for CodingQuarry_transcript_34236-T1 Valid prediction for GlimmerHMM_glimmerT_51427-T1 Valid prediction for GeneMark_model.89472_t Valid prediction for GeneMark_model.89514_t Couldn't classify 344888, 344935 Sorry, prediction pasa_asmbl_30502.p2 fails validation. (ATG) GG 343633-343716 GT GAG (ATC) AG 343996-344060 GT ACG (TGC) AG 344258-344393 GT AGG (GGT) AG 344888-344935 GA AGG -recovered pasa_asmbl_30502.p2, initial, 343633, 343716 -recovered pasa_asmbl_30502.p2, internal, 343996, 344060 -recovered pasa_asmbl_30502.p2, internal, 344258, 344393 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8904, rend_intergenic: 3224 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 22632, rend_intergenic: 8968 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 32421, rend_intergenic: 23550 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 38163, rend_intergenic: 33758 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 64674, rend_intergenic: 40311 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 69618, rend_intergenic: 68908 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 84814, rend_intergenic: 75234 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86792, rend_intergenic: 84818 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 98741, rend_intergenic: 86836 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 102233, rend_intergenic: 99771 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 106105, rend_intergenic: 102452 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108744, rend_intergenic: 106457 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113844, rend_intergenic: 109343 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 121102, rend_intergenic: 113861 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 135262, rend_intergenic: 122112 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 148911, rend_intergenic: 136458 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 158207, rend_intergenic: 150127 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 168174, rend_intergenic: 158308 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 171814, rend_intergenic: 168213 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 175430, rend_intergenic: 172111 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 180117, rend_intergenic: 175616 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 182935, rend_intergenic: 180181 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202788, rend_intergenic: 182987 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 204884, rend_intergenic: 202892 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214157, rend_intergenic: 204942 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 236213, rend_intergenic: 219710 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 240671, rend_intergenic: 237726 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 246897, rend_intergenic: 241622 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 248190, rend_intergenic: 247077 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 255413, rend_intergenic: 251140 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 270398, rend_intergenic: 261864 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 291208, rend_intergenic: 280737 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 297719, rend_intergenic: 292064 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 300986, rend_intergenic: 297936 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 374841, rend_intergenic: 302623 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 381604 -exon list size: 1653 building trellis 0.1 0.1 0.2 0.2 0.3 0.4 0.4 0.5 0.5 0.6 0.7 0.7 0.8 0.8 0.9 1.0 1.0 1.1 1.1 1.2 1.3 1.3 1.4 1.5 1.5 1.6 1.6 1.7 1.8 1.8 1.9 1.9 2.0 2.1 2.1 2.2 2.2 2.3 2.4 2.4 2.5 2.5 2.6 2.7 2.7 2.8 2.8 2.9 3.0 3.0 3.1 3.1 3.2 3.3 3.3 3.4 3.4 3.5 3.6 3.6 3.7 3.7 3.8 3.9 3.9 4.0 4.0 4.1 4.2 4.2 4.3 4.4 4.4 4.5 4.5 4.6 4.7 4.7 4.8 4.8 4.9 5.0 5.0 5.1 5.1 5.2 5.3 5.3 5.4 5.4 5.5 5.6 5.6 5.7 5.7 5.8 5.9 5.9 6.0 6.0 6.1 6.2 6.2 6.3 6.3 6.4 6.5 6.5 6.6 6.6 6.7 6.8 6.8 6.9 6.9 7.0 7.1 7.1 7.2 7.3 7.3 7.4 7.4 7.5 7.6 7.6 7.7 7.7 7.8 7.9 7.9 8.0 8.0 8.1 8.2 8.2 8.3 8.3 8.4 8.5 8.5 8.6 8.6 8.7 8.8 8.8 8.9 8.9 9.0 9.1 9.1 9.2 9.2 9.3 9.4 9.4 9.5 9.5 9.6 9.7 9.7 9.8 9.8 9.9 10.0 10.0 10.1 10.2 10.2 10.3 10.3 10.4 10.5 10.5 10.6 10.6 10.7 10.8 10.8 10.9 10.9 11.0 11.1 11.1 11.2 11.2 11.3 11.4 11.4 11.5 11.5 11.6 11.7 11.7 11.8 11.8 11.9 12.0 12.0 12.1 12.1 12.2 12.3 12.3 12.4 12.4 12.5 12.6 12.6 12.7 12.7 12.8 12.9 12.9 13.0 13.1 13.1 13.2 13.2 13.3 13.4 13.4 13.5 13.5 13.6 13.7 13.7 13.8 13.8 13.9 14.0 14.0 14.1 14.1 14.2 14.3 14.3 14.4 14.4 14.5 14.6 14.6 14.7 14.7 14.8 14.9 14.9 15.0 15.0 15.1 15.2 15.2 15.3 15.3 15.4 15.5 15.5 15.6 15.6 15.7 15.8 15.8 15.9 16.0 16.0 16.1 16.1 16.2 16.3 16.3 16.4 16.4 16.5 16.6 16.6 16.7 16.7 16.8 16.9 16.9 17.0 17.0 17.1 17.2 17.2 17.3 17.3 17.4 17.5 17.5 17.6 17.6 17.7 17.8 17.8 17.9 17.9 18.0 18.1 18.1 18.2 18.2 18.3 18.4 18.4 18.5 18.5 18.6 18.7 18.7 18.8 18.9 18.9 19.0 19.0 19.1 19.2 19.2 19.3 19.3 19.4 19.5 19.5 19.6 19.6 19.7 19.8 19.8 19.9 19.9 20.0 20.1 20.1 20.2 20.2 20.3 20.4 20.4 20.5 20.5 20.6 20.7 20.7 20.8 20.8 20.9 21.0 21.0 21.1 21.1 21.2 21.3 21.3 21.4 21.5 21.5 21.6 21.6 21.7 21.8 21.8 21.9 21.9 22.0 22.1 22.1 22.2 22.2 22.3 22.4 22.4 22.5 22.5 22.6 22.7 22.7 22.8 22.8 22.9 23.0 23.0 23.1 23.1 23.2 23.3 23.3 23.4 23.4 23.5 23.6 23.6 23.7 23.7 23.8 23.9 23.9 24.0 24.0 24.1 24.2 24.2 24.3 24.4 24.4 24.5 24.5 24.6 24.7 24.7 24.8 24.8 24.9 25.0 25.0 25.1 25.1 25.2 25.3 25.3 25.4 25.4 25.5 25.6 25.6 25.7 25.7 25.8 25.9 25.9 26.0 26.0 26.1 26.2 26.2 26.3 26.3 26.4 26.5 26.5 26.6 26.6 26.7 26.8 26.8 26.9 26.9 27.0 27.1 27.1 27.2 27.3 27.3 27.4 27.4 27.5 27.6 27.6 27.7 27.7 27.8 27.9 27.9 28.0 28.0 28.1 28.2 28.2 28.3 28.3 28.4 28.5 28.5 28.6 28.6 28.7 28.8 28.8 28.9 28.9 29.0 29.1 29.1 29.2 29.2 29.3 29.4 29.4 29.5 29.5 29.6 29.7 29.7 29.8 29.8 29.9 30.0 30.0 30.1 30.2 30.2 30.3 30.3 30.4 30.5 30.5 30.6 30.6 30.7 30.8 30.8 30.9 30.9 31.0 31.1 31.1 31.2 31.2 31.3 31.4 31.4 31.5 31.5 31.6 31.7 31.7 31.8 31.8 31.9 32.0 32.0 32.1 32.1 32.2 32.3 32.3 32.4 32.4 32.5 32.6 32.6 32.7 32.7 32.8 32.9 32.9 33.0 33.1 33.1 33.2 33.2 33.3 33.4 33.4 33.5 33.5 33.6 33.7 33.7 33.8 33.8 33.9 34.0 34.0 34.1 34.1 34.2 34.3 34.3 34.4 34.4 34.5 34.6 34.6 34.7 34.7 34.8 34.9 34.9 35.0 35.0 35.1 35.2 35.2 35.3 35.3 35.4 35.5 35.5 35.6 35.6 35.7 35.8 35.8 35.9 36.0 36.0 36.1 36.1 36.2 36.3 36.3 36.4 36.4 36.5 36.6 36.6 36.7 36.7 36.8 36.9 36.9 37.0 37.0 37.1 37.2 37.2 37.3 37.3 37.4 37.5 37.5 37.6 37.6 37.7 37.8 37.8 37.9 37.9 38.0 38.1 38.1 38.2 38.2 38.3 38.4 38.4 38.5 38.5 38.6 38.7 38.7 38.8 38.9 38.9 39.0 39.0 39.1 39.2 39.2 39.3 39.3 39.4 39.5 39.5 39.6 39.6 39.7 39.8 39.8 39.9 39.9 40.0 40.1 40.1 40.2 40.2 40.3 40.4 40.4 40.5 40.5 40.6 40.7 40.7 40.8 40.8 40.9 41.0 41.0 41.1 41.1 41.2 41.3 41.3 41.4 41.5 41.5 41.6 41.6 41.7 41.8 41.8 41.9 41.9 42.0 42.1 42.1 42.2 42.2 42.3 42.4 42.4 42.5 42.5 42.6 42.7 42.7 42.8 42.8 42.9 43.0 43.0 43.1 43.1 43.2 43.3 43.3 43.4 43.4 43.5 43.6 43.6 43.7 43.7 43.8 43.9 43.9 44.0 44.0 44.1 44.2 44.2 44.3 44.4 44.4 44.5 44.5 44.6 44.7 44.7 44.8 44.8 44.9 45.0 45.0 45.1 45.1 45.2 45.3 45.3 45.4 45.4 45.5 45.6 45.6 45.7 45.7 45.8 45.9 45.9 46.0 46.0 46.1 46.2 46.2 46.3 46.3 46.4 46.5 46.5 46.6 46.6 46.7 46.8 46.8 46.9 46.9 47.0 47.1 47.1 47.2 47.3 47.3 47.4 47.4 47.5 47.6 47.6 47.7 47.7 47.8 47.9 47.9 48.0 48.0 48.1 48.2 48.2 48.3 48.3 48.4 48.5 48.5 48.6 48.6 48.7 48.8 48.8 48.9 48.9 49.0 49.1 49.1 49.2 49.2 49.3 49.4 49.4 49.5 49.5 49.6 49.7 49.7 49.8 49.8 49.9 50.0 50.0 50.1 50.2 50.2 50.3 50.3 50.4 50.5 50.5 50.6 50.6 50.7 50.8 50.8 50.9 50.9 51.0 51.1 51.1 51.2 51.2 51.3 51.4 51.4 51.5 51.5 51.6 51.7 51.7 51.8 51.8 51.9 52.0 52.0 52.1 52.1 52.2 52.3 52.3 52.4 52.4 52.5 52.6 52.6 52.7 52.7 52.8 52.9 52.9 53.0 53.1 53.1 53.2 53.2 53.3 53.4 53.4 53.5 53.5 53.6 53.7 53.7 53.8 53.8 53.9 54.0 54.0 54.1 54.1 54.2 54.3 54.3 54.4 54.4 54.5 54.6 54.6 54.7 54.7 54.8 54.9 54.9 55.0 55.0 55.1 55.2 55.2 55.3 55.3 55.4 55.5 55.5 55.6 55.6 55.7 55.8 55.8 55.9 56.0 56.0 56.1 56.1 56.2 56.3 56.3 56.4 56.4 56.5 56.6 56.6 56.7 56.7 56.8 56.9 56.9 57.0 57.0 57.1 57.2 57.2 57.3 57.3 57.4 57.5 57.5 57.6 57.6 57.7 57.8 57.8 57.9 57.9 58.0 58.1 58.1 58.2 58.2 58.3 58.4 58.4 58.5 58.5 58.6 58.7 58.7 58.8 58.9 58.9 59.0 59.0 59.1 59.2 59.2 59.3 59.3 59.4 59.5 59.5 59.6 59.6 59.7 59.8 59.8 59.9 59.9 60.0 60.1 60.1 60.2 60.2 60.3 60.4 60.4 60.5 60.5 60.6 60.7 60.7 60.8 60.8 60.9 61.0 61.0 61.1 61.1 61.2 61.3 61.3 61.4 61.5 61.5 61.6 61.6 61.7 61.8 61.8 61.9 61.9 62.0 62.1 62.1 62.2 62.2 62.3 62.4 62.4 62.5 62.5 62.6 62.7 62.7 62.8 62.8 62.9 63.0 63.0 63.1 63.1 63.2 63.3 63.3 63.4 63.4 63.5 63.6 63.6 63.7 63.7 63.8 63.9 63.9 64.0 64.0 64.1 64.2 64.2 64.3 64.4 64.4 64.5 64.5 64.6 64.7 64.7 64.8 64.8 64.9 65.0 65.0 65.1 65.1 65.2 65.3 65.3 65.4 65.4 65.5 65.6 65.6 65.7 65.7 65.8 65.9 65.9 66.0 66.0 66.1 66.2 66.2 66.3 66.3 66.4 66.5 66.5 66.6 66.6 66.7 66.8 66.8 66.9 66.9 67.0 67.1 67.1 67.2 67.3 67.3 67.4 67.4 67.5 67.6 67.6 67.7 67.7 67.8 67.9 67.9 68.0 68.0 68.1 68.2 68.2 68.3 68.3 68.4 68.5 68.5 68.6 68.6 68.7 68.8 68.8 68.9 68.9 69.0 69.1 69.1 69.2 69.2 69.3 69.4 69.4 69.5 69.5 69.6 69.7 69.7 69.8 69.8 69.9 70.0 70.0 70.1 70.2 70.2 70.3 70.3 70.4 70.5 70.5 70.6 70.6 70.7 70.8 70.8 70.9 70.9 71.0 71.1 71.1 71.2 71.2 71.3 71.4 71.4 71.5 71.5 71.6 71.7 71.7 71.8 71.8 71.9 72.0 72.0 72.1 72.1 72.2 72.3 72.3 72.4 72.4 72.5 72.6 72.6 72.7 72.7 72.8 72.9 72.9 73.0 73.1 73.1 73.2 73.2 73.3 73.4 73.4 73.5 73.5 73.6 73.7 73.7 73.8 73.8 73.9 74.0 74.0 74.1 74.1 74.2 74.3 74.3 74.4 74.4 74.5 74.6 74.6 74.7 74.7 74.8 74.9 74.9 75.0 75.0 75.1 75.2 75.2 75.3 75.3 75.4 75.5 75.5 75.6 75.6 75.7 75.8 75.8 75.9 76.0 76.0 76.1 76.1 76.2 76.3 76.3 76.4 76.4 76.5 76.6 76.6 76.7 76.7 76.8 76.9 76.9 77.0 77.0 77.1 77.2 77.2 77.3 77.3 77.4 77.5 77.5 77.6 77.6 77.7 77.8 77.8 77.9 77.9 78.0 78.1 78.1 78.2 78.2 78.3 78.4 78.4 78.5 78.5 78.6 78.7 78.7 78.8 78.9 78.9 79.0 79.0 79.1 79.2 79.2 79.3 79.3 79.4 79.5 79.5 79.6 79.6 79.7 79.8 79.8 79.9 79.9 80.0 80.1 80.1 80.2 80.2 80.3 80.4 80.4 80.5 80.5 80.6 80.7 80.7 80.8 80.8 80.9 81.0 81.0 81.1 81.1 81.2 81.3 81.3 81.4 81.5 81.5 81.6 81.6 81.7 81.8 81.8 81.9 81.9 82.0 82.1 82.1 82.2 82.2 82.3 82.4 82.4 82.5 82.5 82.6 82.7 82.7 82.8 82.8 82.9 83.0 83.0 83.1 83.1 83.2 83.3 83.3 83.4 83.4 83.5 83.6 83.6 83.7 83.7 83.8 83.9 83.9 84.0 84.0 84.1 84.2 84.2 84.3 84.4 84.4 84.5 84.5 84.6 84.7 84.7 84.8 84.8 84.9 85.0 85.0 85.1 85.1 85.2 85.3 85.3 85.4 85.4 85.5 85.6 85.6 85.7 85.7 85.8 85.9 85.9 86.0 86.0 86.1 86.2 86.2 86.3 86.3 86.4 86.5 86.5 86.6 86.6 86.7 86.8 86.8 86.9 86.9 87.0 87.1 87.1 87.2 87.3 87.3 87.4 87.4 87.5 87.6 87.6 87.7 87.7 87.8 87.9 87.9 88.0 88.0 88.1 88.2 88.2 88.3 88.3 88.4 88.5 88.5 88.6 88.6 88.7 88.8 88.8 88.9 88.9 89.0 89.1 89.1 89.2 89.2 89.3 89.4 89.4 89.5 89.5 89.6 89.7 89.7 89.8 89.8 89.9 90.0 90.0 90.1 90.2 90.2 90.3 90.3 90.4 90.5 90.5 90.6 90.6 90.7 90.8 90.8 90.9 90.9 91.0 91.1 91.1 91.2 91.2 91.3 91.4 91.4 91.5 91.5 91.6 91.7 91.7 91.8 91.8 91.9 92.0 92.0 92.1 92.1 92.2 92.3 92.3 92.4 92.4 92.5 92.6 92.6 92.7 92.7 92.8 92.9 92.9 93.0 93.1 93.1 93.2 93.2 93.3 93.4 93.4 93.5 93.5 93.6 93.7 93.7 93.8 93.8 93.9 94.0 94.0 94.1 94.1 94.2 94.3 94.3 94.4 94.4 94.5 94.6 94.6 94.7 94.7 94.8 94.9 94.9 95.0 95.0 95.1 95.2 95.2 95.3 95.3 95.4 95.5 95.5 95.6 95.6 95.7 95.8 95.8 95.9 96.0 96.0 96.1 96.1 96.2 96.3 96.3 96.4 96.4 96.5 96.6 96.6 96.7 96.7 96.8 96.9 96.9 97.0 97.0 97.1 97.2 97.2 97.3 97.3 97.4 97.5 97.5 97.6 97.6 97.7 97.8 97.8 97.9 97.9 98.0 98.1 98.1 98.2 98.2 98.3 98.4 98.4 98.5 98.5 98.6 98.7 98.7 98.8 98.9 98.9 99.0 99.0 99.1 99.2 99.2 99.3 99.3 99.4 99.5 99.5 99.6 99.6 99.7 99.8 99.8 99.9 99.9 -found 59 predictions from path traversal Error with prediction: snap lend_intergenic: 8904, rend_intergenic: 3224 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 22632, rend_intergenic: 8968 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 32421, rend_intergenic: 23550 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 38163, rend_intergenic: 33758 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 64674, rend_intergenic: 40311 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 69618, rend_intergenic: 68908 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 84814, rend_intergenic: 75234 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86792, rend_intergenic: 84818 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 98741, rend_intergenic: 86836 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 102233, rend_intergenic: 99771 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 106105, rend_intergenic: 102452 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108744, rend_intergenic: 106457 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113844, rend_intergenic: 109343 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 121102, rend_intergenic: 113861 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 135262, rend_intergenic: 122112 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 148911, rend_intergenic: 136458 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 158207, rend_intergenic: 150127 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 168174, rend_intergenic: 158308 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 171814, rend_intergenic: 168213 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 175430, rend_intergenic: 172111 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 180117, rend_intergenic: 175616 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 182935, rend_intergenic: 180181 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202788, rend_intergenic: 182987 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 204884, rend_intergenic: 202892 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214157, rend_intergenic: 204942 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 236213, rend_intergenic: 219710 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 240671, rend_intergenic: 237726 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 246897, rend_intergenic: 241622 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 248190, rend_intergenic: 247077 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 255413, rend_intergenic: 251140 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 270398, rend_intergenic: 261864 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 291208, rend_intergenic: 280737 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 297719, rend_intergenic: 292064 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 300986, rend_intergenic: 297936 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 374841, rend_intergenic: 302623 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 36 predictions persist after filtering for low support