-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_1073494-1191602

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_22-snap.228-T1
Valid prediction for snap_scaffold_22-snap.231-T1
Valid prediction for snap_scaffold_22-snap.219-T1
Valid prediction for GeneMark_model.86756_t
Valid prediction for GeneMark_model.86767_t
Valid prediction for GeneMark_model.86776_t
Valid prediction for GeneMark_model.86760_t
Valid prediction for snap_scaffold_22-snap.223-T1
Valid prediction for GlimmerHMM_glimmerT_50129-T1
Valid prediction for snap_scaffold_22-snap.221-T1
Valid prediction for GeneMark_model.86764_t
Valid prediction for GlimmerHMM_glimmerT_50133-T1
Valid prediction for GeneMark_model.86783_t
Valid prediction for GeneMark_model.86765_t
Valid prediction for GeneMark_model.86781_t
Valid prediction for snap_scaffold_22-snap.226-T1
Valid prediction for snap_scaffold_22-snap.214-T1
Valid prediction for GeneMark_model.86773_t
Valid prediction for GeneMark_model.86788_t
Valid prediction for snap_scaffold_22-snap.208-T1
Valid prediction for GlimmerHMM_glimmerT_50124-T1
Valid prediction for GlimmerHMM_glimmerT_50132-T1
Valid prediction for snap_scaffold_22-snap.216-T1
Valid prediction for GlimmerHMM_glimmerT_50139-T1
Valid prediction for GlimmerHMM_glimmerT_50138-T1
Valid prediction for GeneMark_model.86777_t
Valid prediction for GlimmerHMM_glimmerT_50137-T1
Valid prediction for GlimmerHMM_glimmerT_50136-T1
Valid prediction for GeneMark_model.86770_t
Valid prediction for snap_scaffold_22-snap.232-T1
Valid prediction for GeneMark_model.86785_t
Valid prediction for GeneMark_model.86754_t
Valid prediction for GeneMark_model.86763_t
Valid prediction for GlimmerHMM_glimmerT_50128-T1
Valid prediction for snap_scaffold_22-snap.225-T1
Valid prediction for GeneMark_model.86779_t
Valid prediction for snap_scaffold_22-snap.220-T1
Valid prediction for GlimmerHMM_glimmerT_50130-T1
Valid prediction for GlimmerHMM_glimmerT_50123-T1
Valid prediction for GeneMark_model.86784_t
Valid prediction for snap_scaffold_22-snap.212-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.86766_t
Valid prediction for GeneMark_model.86775_t
Valid prediction for Augustus_model.g33645.t1
Valid prediction for snap_scaffold_22-snap.222-T1
Valid prediction for snap_scaffold_22-snap.215-T1
Valid prediction for snap_scaffold_22-snap.229-T1
Valid prediction for snap_scaffold_22-snap.209-T1
Valid prediction for GeneMark_model.86774_t
Valid prediction for GlimmerHMM_glimmerT_50125-T1
Valid prediction for GeneMark_model.86786_t
Valid prediction for GlimmerHMM_glimmerT_50131-T1
Valid prediction for GeneMark_model.86772_t
Valid prediction for GeneMark_model.86780_t
Valid prediction for snap_scaffold_22-snap.217-T1
Valid prediction for GeneMark_model.86768_t
Valid prediction for snap_scaffold_22-snap.218-T1
Valid prediction for GeneMark_model.86755_t
Valid prediction for GeneMark_model.86787_t
Valid prediction for GeneMark_model.86753_t
Valid prediction for GeneMark_model.86769_t
Valid prediction for snap_scaffold_22-snap.230-T1
Valid prediction for snap_scaffold_22-snap.213-T1
Valid prediction for GeneMark_model.86778_t
Valid prediction for GeneMark_model.86758_t
Valid prediction for GeneMark_model.86762_t
Valid prediction for Augustus_model.g33644.t1
Valid prediction for GeneMark_model.86771_t
Valid prediction for snap_scaffold_22-snap.211-T1
Valid prediction for GeneMark_model.86761_t
Valid prediction for GeneMark_model.86757_t
Valid prediction for GlimmerHMM_glimmerT_50127-T1
Valid prediction for GeneMark_model.86752_t
Valid prediction for GlimmerHMM_glimmerT_50126-T1
Valid prediction for Augustus_model.g33643.t1
Valid prediction for snap_scaffold_22-snap.224-T1
Valid prediction for GlimmerHMM_glimmerT_50135-T1
Valid prediction for GeneMark_model.86782_t
Valid prediction for GlimmerHMM_glimmerT_50134-T1
Valid prediction for GeneMark_model.86759_t
Valid prediction for snap_scaffold_22-snap.210-T1
Valid prediction for snap_scaffold_22-snap.227-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16101, rend_intergenic: 14064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33286, rend_intergenic: 27384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48554, rend_intergenic: 45356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61932, rend_intergenic: 60862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65062, rend_intergenic: 62068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84523, rend_intergenic: 82412  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87516, rend_intergenic: 86196  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 118109
-exon list size: 343


building trellis

0.3    
0.6    
0.9    
1.2    
1.4    
1.7    
2.0    
2.3    
2.6    
2.9    
3.2    
3.5    
3.8    
4.1    
4.3    
4.6    
4.9    
5.2    
5.5    
5.8    
6.1    
6.4    
6.7    
7.0    
7.2    
7.5    
7.8    
8.1    
8.4    
8.7    
9.0    
9.3    
9.6    
9.9    
10.1    
10.4    
10.7    
11.0    
11.3    
11.6    
11.9    
12.2    
12.5    
12.8    
13.0    
13.3    
13.6    
13.9    
14.2    
14.5    
14.8    
15.1    
15.4    
15.7    
15.9    
16.2    
16.5    
16.8    
17.1    
17.4    
17.7    
18.0    
18.3    
18.6    
18.8    
19.1    
19.4    
19.7    
20.0    
20.3    
20.6    
20.9    
21.2    
21.4    
21.7    
22.0    
22.3    
22.6    
22.9    
23.2    
23.5    
23.8    
24.1    
24.3    
24.6    
24.9    
25.2    
25.5    
25.8    
26.1    
26.4    
26.7    
27.0    
27.2    
27.5    
27.8    
28.1    
28.4    
28.7    
29.0    
29.3    
29.6    
29.9    
30.1    
30.4    
30.7    
31.0    
31.3    
31.6    
31.9    
32.2    
32.5    
32.8    
33.0    
33.3    
33.6    
33.9    
34.2    
34.5    
34.8    
35.1    
35.4    
35.7    
35.9    
36.2    
36.5    
36.8    
37.1    
37.4    
37.7    
38.0    
38.3    
38.6    
38.8    
39.1    
39.4    
39.7    
40.0    
40.3    
40.6    
40.9    
41.2    
41.4    
41.7    
42.0    
42.3    
42.6    
42.9    
43.2    
43.5    
43.8    
44.1    
44.3    
44.6    
44.9    
45.2    
45.5    
45.8    
46.1    
46.4    
46.7    
47.0    
47.2    
47.5    
47.8    
48.1    
48.4    
48.7    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.3    
51.6    
51.9    
52.2    
52.5    
52.8    
53.0    
53.3    
53.6    
53.9    
54.2    
54.5    
54.8    
55.1    
55.4    
55.7    
55.9    
56.2    
56.5    
56.8    
57.1    
57.4    
57.7    
58.0    
58.3    
58.6    
58.8    
59.1    
59.4    
59.7    
60.0    
60.3    
60.6    
60.9    
61.2    
61.4    
61.7    
62.0    
62.3    
62.6    
62.9    
63.2    
63.5    
63.8    
64.1    
64.3    
64.6    
64.9    
65.2    
65.5    
65.8    
66.1    
66.4    
66.7    
67.0    
67.2    
67.5    
67.8    
68.1    
68.4    
68.7    
69.0    
69.3    
69.6    
69.9    
70.1    
70.4    
70.7    
71.0    
71.3    
71.6    
71.9    
72.2    
72.5    
72.8    
73.0    
73.3    
73.6    
73.9    
74.2    
74.5    
74.8    
75.1    
75.4    
75.7    
75.9    
76.2    
76.5    
76.8    
77.1    
77.4    
77.7    
78.0    
78.3    
78.6    
78.8    
79.1    
79.4    
79.7    
80.0    
80.3    
80.6    
80.9    
81.2    
81.4    
81.7    
82.0    
82.3    
82.6    
82.9    
83.2    
83.5    
83.8    
84.1    
84.3    
84.6    
84.9    
85.2    
85.5    
85.8    
86.1    
86.4    
86.7    
87.0    
87.2    
87.5    
87.8    
88.1    
88.4    
88.7    
89.0    
89.3    
89.6    
89.9    
90.1    
90.4    
90.7    
91.0    
91.3    
91.6    
91.9    
92.2    
92.5    
92.8    
93.0    
93.3    
93.6    
93.9    
94.2    
94.5    
94.8    
95.1    
95.4    
95.7    
95.9    
96.2    
96.5    
96.8    
97.1    
97.4    
97.7    
98.0    
98.3    
98.6    
98.8    
99.1    
99.4    
99.7    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 16101, rend_intergenic: 14064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33286, rend_intergenic: 27384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48554, rend_intergenic: 45356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61932, rend_intergenic: 60862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65062, rend_intergenic: 62068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84523, rend_intergenic: 82412  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87516, rend_intergenic: 86196  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support