-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_10615803-10886201 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 32676, 33539 Sorry, prediction pasa_asmbl_29651.p1 fails validation. (GGC) NN 32676-33539 TT AAT Valid prediction for snap_scaffold_22-snap.2243-T1 Valid prediction for snap_scaffold_22-snap.2209-T1 Valid prediction for snap_scaffold_22-snap.2214-T1 Valid prediction for snap_scaffold_22-snap.2246-T1 Valid prediction for snap_scaffold_22-snap.2221-T1 Valid prediction for GeneMark_model.89338_t Valid prediction for GeneMark_model.89328_t Valid prediction for snap_scaffold_22-snap.2250-T1 Valid prediction for GeneMark_model.89381_t Valid prediction for snap_scaffold_22-snap.2236-T1 Valid prediction for Augustus_model.g34464.t1 Valid prediction for snap_scaffold_22-snap.2235-T1 Valid prediction for GeneMark_model.89324_t Valid prediction for GeneMark_model.89373_t Valid prediction for snap_scaffold_22-snap.2218-T1 Valid prediction for GeneMark_model.89337_t Valid prediction for GeneMark_model.89352_t Valid prediction for GeneMark_model.89359_t Valid prediction for GeneMark_model.89357_t Valid prediction for snap_scaffold_22-snap.2233-T1 Valid prediction for snap_scaffold_22-snap.2205-T1 Valid prediction for GeneMark_model.89336_t Valid prediction for GlimmerHMM_glimmerT_51375-T1 Valid prediction for GlimmerHMM_glimmerT_51388-T1 Valid prediction for GeneMark_model.89330_t Valid prediction for snap_scaffold_22-snap.2225-T1 Valid prediction for GlimmerHMM_glimmerT_51381-T1 Valid prediction for snap_scaffold_22-snap.2211-T1 Valid prediction for GlimmerHMM_glimmerT_51387-T1 Valid prediction for Augustus_model.g34469.t1 Valid prediction for GeneMark_model.89334_t Valid prediction for GeneMark_model.89344_t Valid prediction for Augustus_model.g34467.t1 Valid prediction for snap_scaffold_22-snap.2227-T1 Valid prediction for GlimmerHMM_glimmerT_51380-T1 Valid prediction for GeneMark_model.89368_t Valid prediction for snap_scaffold_22-snap.2249-T1 Valid prediction for Augustus_model.g34479.t1 Valid prediction for snap_scaffold_22-snap.2207-T1 Valid prediction for GeneMark_model.89375_t Valid prediction for snap_scaffold_22-snap.2241-T1 Valid prediction for Augustus_model.g34459.t1 Valid prediction for GeneMark_model.89391_t Valid prediction for GeneMark_model.89340_t Valid prediction for snap_scaffold_22-snap.2232-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for snap_scaffold_22-snap.2216-T1 Valid prediction for snap_scaffold_22-snap.2245-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GeneMark_model.89379_t Valid prediction for GeneMark_model.89383_t Valid prediction for GeneMark_model.89332_t Valid prediction for GeneMark_model.89342_t Valid prediction for GeneMark_model.89365_t Couldn't classify 85842, 86033 Couldn't classify 89030, 89215 Sorry, prediction pasa_asmbl_29653.p1 fails validation. (AAA) AC 85842-86033 GT ATG (GTT) AG 87071-87220 GT AGG (TTG) AG 88339-88461 GT TGG (AAG) AG 89030-89215 GG TAG -recovered pasa_asmbl_29653.p1, internal, 87071, 87220 -recovered pasa_asmbl_29653.p1, internal, 88339, 88461 Valid prediction for GlimmerHMM_glimmerT_51378-T1 Valid prediction for GeneMark_model.89348_t Valid prediction for GeneMark_model.89326_t Valid prediction for Augustus_model.g34465.t1 Valid prediction for Augustus_model.g34468.t1 Valid prediction for snap_scaffold_22-snap.2230-T1 Valid prediction for GeneMark_model.89362_t Valid prediction for Augustus_model.g34476.t1 Valid prediction for GlimmerHMM_glimmerT_51393-T1 Valid prediction for Augustus_model.g34481.t1 Valid prediction for GeneMark_model.89322_t Valid prediction for GlimmerHMM_glimmerT_51367-T1 Valid prediction for Augustus_model.g34480.t1 Valid prediction for Augustus_model.g34460.t1 Valid prediction for GlimmerHMM_glimmerT_51390-T1 Valid prediction for snap_scaffold_22-snap.2226-T1 Couldn't classify 170181, 170337 Couldn't classify 173280, 173409 Sorry, prediction pasa_asmbl_29759.p1 fails validation. (AGA) CC 170181-170337 GT AGG (GCA) AG 171569-171659 GT ACG (GGT) AG 172663-172728 GT AGG (GTG) AG 173280-173409 GT AGG -recovered pasa_asmbl_29759.p1, internal, 171569, 171659 -recovered pasa_asmbl_29759.p1, internal, 172663, 172728 -recovered pasa_asmbl_29759.p1, internal, 173280, 173409 Valid prediction for snap_scaffold_22-snap.2213-T1 Valid prediction for GlimmerHMM_glimmerT_51370-T1 Valid prediction for GlimmerHMM_glimmerT_51396-T1 Valid prediction for snap_scaffold_22-snap.2247-T1 Valid prediction for GeneMark_model.89335_t Valid prediction for snap_scaffold_22-snap.2202-T1 Valid prediction for GeneMark_model.89386_t Valid prediction for GlimmerHMM_glimmerT_51369-T1 Valid prediction for GeneMark_model.89377_t Valid prediction for GlimmerHMM_glimmerT_51394-T1 Valid prediction for GeneMark_model.89385_t Valid prediction for GeneMark_model.89354_t Valid prediction for snap_scaffold_22-snap.2239-T1 Valid prediction for GeneMark_model.89346_t Valid prediction for GlimmerHMM_glimmerT_51376-T1 Valid prediction for GeneMark_model.89389_t Valid prediction for snap_scaffold_22-snap.2220-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.89367_t Valid prediction for snap_scaffold_22-snap.2244-T1 Valid prediction for GlimmerHMM_glimmerT_51373-T1 Valid prediction for GeneMark_model.89353_t Valid prediction for CodingQuarry_transcript_34220-T1 Valid prediction for GlimmerHMM_glimmerT_51377-T1 Valid prediction for GeneMark_model.89339_t Valid prediction for GlimmerHMM_glimmerT_51371-T1 Valid prediction for GeneMark_model.89378_t Valid prediction for GeneMark_model.89364_t Valid prediction for GeneMark_model.89321_t Valid prediction for CodingQuarry_transcript_34223-T1 Valid prediction for snap_scaffold_22-snap.2201-T1 Valid prediction for GlimmerHMM_glimmerT_51374-T1 Valid prediction for GeneMark_model.89345_t Couldn't classify 31629, 31776 Sorry, prediction GeneMark_model.89388_t fails validation. (ATG) AG 30327-30344 GT CAG (GGG) AG 31197-31360 GT AAG (AGA) AG 31585-31593 GT AAG (AAA) AG 31629-31776 GT CTG -recovered GeneMark_model.89388_t, initial, 30327, 30344 add_exon() Sorry, GeneMark_model.89388_t 31197-31360-terminal-2 is invalid. -recovered GeneMark_model.89388_t, terminal, 31197, 31360 -recovered GeneMark_model.89388_t, internal, 30327, 30344 -recovered GeneMark_model.89388_t, internal, 31197, 31360 -recovered GeneMark_model.89388_t, internal, 31585, 31593 -recovered GeneMark_model.89388_t, internal, 31629, 31776 Valid prediction for GeneMark_model.89351_t Valid prediction for snap_scaffold_22-snap.2242-T1 Valid prediction for snap_scaffold_22-snap.2210-T1 Valid prediction for GeneMark_model.89384_t Valid prediction for Augustus_model.g34475.t1 Valid prediction for GlimmerHMM_glimmerT_51379-T1 Valid prediction for GeneMark_model.89371_t Valid prediction for GeneMark_model.89376_t Valid prediction for snap_scaffold_22-snap.2223-T1 Couldn't classify 131363, 131387 Sorry, prediction pasa_asmbl_30391.p1 fails validation. (GCC) GC 131363-131387 GT CGG (GGT) AG 131970-132071 GT TGG (AGG) AG 132308-132558 GT AGG (GTT) AG 133915-133997 GT AGG (GAT) AG 134306-134395 GT ATG (TCA) AG 135327-135513 CG GAC -recovered pasa_asmbl_30391.p1, terminal, 135327, 135513 -recovered pasa_asmbl_30391.p1, internal, 131970, 132071 -recovered pasa_asmbl_30391.p1, internal, 132308, 132558 -recovered pasa_asmbl_30391.p1, internal, 133915, 133997 -recovered pasa_asmbl_30391.p1, internal, 134306, 134395 Valid prediction for GeneMark_model.89355_t Valid prediction for Augustus_model.g34477.t1 Valid prediction for snap_scaffold_22-snap.2234-T1 Valid prediction for GeneMark_model.89372_t Valid prediction for Augustus_model.g34472.t1 Valid prediction for GlimmerHMM_glimmerT_51395-T1 Valid prediction for GeneMark_model.89380_t Valid prediction for Augustus_model.g34473.t1 Valid prediction for Augustus_model.g34457.t1 Couldn't classify 251271, 251378 Sorry, prediction pasa_asmbl_30381.p1 fails validation. (ATG) TA 241308-241548 GT CGG (TGC) AG 242244-242344 GT CCG (AAC) AG 242992-243061 GT AGG (GTA) AG 243485-243615 GT ATG (AAA) AG 244183-244271 GT GGG (GGC) AG 244476-244575 GT CGG (TTT) AG 244865-244908 GT AGG (TCT) AG 247537-247614 GT TGG (GGA) AG 248447-248643 GT TGG (GTG) AG 251108-251172 GT AGG (GTG) AG 251271-251378 TT GGT -recovered pasa_asmbl_30381.p1, initial, 241308, 241548 -recovered pasa_asmbl_30381.p1, internal, 242244, 242344 -recovered pasa_asmbl_30381.p1, internal, 242992, 243061 -recovered pasa_asmbl_30381.p1, internal, 243485, 243615 -recovered pasa_asmbl_30381.p1, internal, 244183, 244271 -recovered pasa_asmbl_30381.p1, internal, 244476, 244575 -recovered pasa_asmbl_30381.p1, internal, 244865, 244908 -recovered pasa_asmbl_30381.p1, internal, 247537, 247614 -recovered pasa_asmbl_30381.p1, internal, 248447, 248643 -recovered pasa_asmbl_30381.p1, internal, 251108, 251172 Valid prediction for snap_scaffold_22-snap.2222-T1 Valid prediction for GlimmerHMM_glimmerT_51389-T1 Valid prediction for CodingQuarry_transcript_34221-T1 Valid prediction for Augustus_model.g34463.t1 Valid prediction for GlimmerHMM_glimmerT_51366-T1 Valid prediction for GeneMark_model.89333_t Valid prediction for CodingQuarry_transcript_34224-T1 Valid prediction for Augustus_model.g34471.t1 Valid prediction for GeneMark_model.89361_t Couldn't classify 214829, 214913 Sorry, prediction pasa_asmbl_30384.p1 fails validation. (GCT) CA 214829-214913 GT AGG (GAC) AG 216401-216604 GT AGG (TTC) AG 216924-217127 GT AGG (TTG) AG 217738-217943 AC AGA -recovered pasa_asmbl_30384.p1, terminal, 217738, 217943 -recovered pasa_asmbl_30384.p1, internal, 216401, 216604 -recovered pasa_asmbl_30384.p1, internal, 216924, 217127 Valid prediction for snap_scaffold_22-snap.2203-T1 Couldn't classify 79625, 79676 Couldn't classify 82282, 82529 Sorry, prediction pasa_asmbl_30486.p1 fails validation. (TTC) TA 79625-79676 GT AGG (GGA) AG 82282-82529 AG ACA Valid prediction for Augustus_model.g34458.t1 Valid prediction for snap_scaffold_22-snap.2208-T1 Valid prediction for snap_scaffold_22-snap.2229-T1 Valid prediction for GeneMark_model.89390_t Valid prediction for Augustus_model.g34470.t1 Valid prediction for GeneMark_model.89360_t Valid prediction for Augustus_model.g34466.t1 Valid prediction for GlimmerHMM_glimmerT_51386-T1 Valid prediction for snap_scaffold_22-snap.2212-T1 Valid prediction for snap_scaffold_22-snap.2237-T1 Valid prediction for GeneMark_model.89363_t Valid prediction for GlimmerHMM_glimmerT_51385-T1 Valid prediction for GlimmerHMM_glimmerT_51368-T1 Valid prediction for GlimmerHMM_glimmerT_51392-T1 Valid prediction for GeneMark_model.89325_t Valid prediction for snap_scaffold_22-snap.2228-T1 Valid prediction for CodingQuarry_transcript_34222-T1 Valid prediction for pasa_asmbl_30386.p1 Valid prediction for snap_scaffold_22-snap.2219-T1 Valid prediction for CodingQuarry_transcript_34217-T1 Valid prediction for snap_scaffold_22-snap.2200-T1 Valid prediction for Augustus_model.g34461.t1 Valid prediction for GeneMark_model.89341_t Valid prediction for GlimmerHMM_glimmerT_51372-T1 Valid prediction for GeneMark_model.89343_t Valid prediction for snap_scaffold_22-snap.2224-T1 Valid prediction for snap_scaffold_22-snap.2217-T1 Valid prediction for Augustus_model.g34474.t1 Valid prediction for Augustus_model.g34462.t1 Valid prediction for snap_scaffold_22-snap.2238-T1 Valid prediction for snap_scaffold_22-snap.2215-T1 Valid prediction for GeneMark_model.89331_t Valid prediction for GeneMark_model.89349_t Couldn't classify 41017, 41027 Sorry, prediction GeneMark_model.89387_t fails validation. (AGA) AG 41017-41027 GC GAG (AGA) AG 43630-43635 GT AGG (AGA) AG 43658-43669 GT CGG (AGA) AG 43696-43725 GT AAG (GGA) AG 44319-44351 GT AGG (CGA) AG 44437-44481 GC GAG (AAA) AG 44505-44609 GT GGG (ACA) AG 44920-44974 GC GAG -recovered GeneMark_model.89387_t, terminal, 44920, 44974 -recovered GeneMark_model.89387_t, internal, 41017, 41027 -recovered GeneMark_model.89387_t, internal, 43630, 43635 -recovered GeneMark_model.89387_t, internal, 43658, 43669 -recovered GeneMark_model.89387_t, internal, 43696, 43725 -recovered GeneMark_model.89387_t, internal, 44319, 44351 -recovered GeneMark_model.89387_t, internal, 44437, 44481 -recovered GeneMark_model.89387_t, internal, 44505, 44609 -recovered GeneMark_model.89387_t, internal, 44920, 44974 Valid prediction for GeneMark_model.89370_t Valid prediction for GeneMark_model.89356_t Valid prediction for snap_scaffold_22-snap.2204-T1 Valid prediction for GeneMark_model.89374_t Valid prediction for GeneMark_model.89347_t Valid prediction for GlimmerHMM_glimmerT_51397-T1 Valid prediction for GlimmerHMM_glimmerT_51384-T1 Valid prediction for snap_scaffold_22-snap.2231-T1 Valid prediction for Augustus_model.g34478.t1 Valid prediction for GlimmerHMM_glimmerT_51391-T1 Valid prediction for GeneMark_model.89327_t Valid prediction for snap_scaffold_22-snap.2240-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for GeneMark_model.89329_t Valid prediction for GlimmerHMM_glimmerT_51382-T1 Valid prediction for GeneMark_model.89323_t Valid prediction for GeneMark_model.89382_t Valid prediction for GeneMark_model.89369_t Valid prediction for GeneMark_model.89358_t Valid prediction for GlimmerHMM_glimmerT_51383-T1 Valid prediction for snap_scaffold_22-snap.2206-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7155, rend_intergenic: 4430 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 9469, rend_intergenic: 7372 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 15325, rend_intergenic: 11261 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 26482, rend_intergenic: 15381 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28462, rend_intergenic: 26792 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 33355, rend_intergenic: 29837 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 35031, rend_intergenic: 34590 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40030, rend_intergenic: 35999 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50845, rend_intergenic: 42296 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55241, rend_intergenic: 52457 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 67771, rend_intergenic: 62638 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 72231, rend_intergenic: 68616 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 82839, rend_intergenic: 76100 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100637, rend_intergenic: 89000 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114642, rend_intergenic: 100643 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 119756, rend_intergenic: 115362 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131118, rend_intergenic: 119962 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 149006, rend_intergenic: 134183 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 161645, rend_intergenic: 150918 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 177011, rend_intergenic: 163465 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 183512, rend_intergenic: 177251 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 191177, rend_intergenic: 186130 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 195102, rend_intergenic: 193126 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 207507, rend_intergenic: 195487 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 219006, rend_intergenic: 207741 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 270399 -exon list size: 1084 building trellis 0.1 0.2 0.3 0.4 0.5 0.6 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 4.0 4.1 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.9 5.0 5.1 5.2 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.4 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.6 7.7 7.8 7.9 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.9 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.8 11.9 12.0 12.1 12.2 12.2 12.3 12.4 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.4 13.5 13.6 13.7 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.5 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.6 15.7 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.4 16.5 16.6 16.7 16.8 16.9 16.9 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.2 19.2 19.3 19.4 19.5 19.6 19.7 19.8 19.9 20.0 20.1 20.2 20.3 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.0 21.1 21.2 21.3 21.4 21.5 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.6 22.7 22.7 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.8 23.9 24.0 24.1 24.2 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.0 25.1 25.2 25.3 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.2 26.3 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.3 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.5 28.5 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.3 29.4 29.5 29.6 29.7 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.8 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.7 31.8 31.9 32.0 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.1 33.2 33.3 33.4 33.5 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.3 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.1 35.2 35.3 35.4 35.5 35.5 35.6 35.7 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.6 37.7 37.8 37.8 37.9 38.0 38.1 38.2 38.3 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.0 39.1 39.2 39.3 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.1 40.2 40.3 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.3 41.4 41.5 41.6 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.4 42.5 42.6 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.6 43.7 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.7 44.8 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.7 45.8 45.9 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.8 47.9 48.0 48.1 48.2 48.3 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.2 49.3 49.4 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.6 50.7 50.8 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.7 51.8 51.9 52.0 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.9 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.2 55.3 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.3 56.4 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.4 57.5 57.6 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.4 58.5 58.6 58.7 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.7 59.8 59.9 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.8 60.9 61.0 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.8 61.9 62.0 62.1 62.2 62.2 62.3 62.4 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.3 64.4 64.5 64.5 64.6 64.7 64.8 64.9 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.7 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.8 66.9 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.0 68.1 68.2 68.3 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.3 70.4 70.5 70.6 70.7 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.5 71.5 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.7 73.8 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.8 74.9 75.0 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.8 75.9 76.0 76.1 76.2 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.3 77.3 77.4 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.5 78.6 78.7 78.8 78.9 79.0 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.7 79.8 79.9 80.0 80.1 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.8 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.7 81.8 81.9 82.0 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.1 83.1 83.2 83.3 83.4 83.5 83.6 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.3 84.4 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.5 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.3 86.4 86.5 86.6 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.6 87.7 87.8 87.8 87.9 88.0 88.1 88.2 88.3 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.1 90.2 90.3 90.4 90.5 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.3 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.1 92.2 92.3 92.4 92.4 92.5 92.6 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.6 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.3 94.4 94.5 94.6 94.7 94.8 94.8 94.9 95.0 95.1 95.2 95.3 95.4 95.5 95.6 95.7 95.8 95.9 95.9 96.0 96.1 96.2 96.3 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.1 97.2 97.3 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.3 98.4 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.4 99.5 99.6 99.7 99.8 99.9 -found 39 predictions from path traversal Error with prediction: snap lend_intergenic: 7155, rend_intergenic: 4430 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 9469, rend_intergenic: 7372 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 15325, rend_intergenic: 11261 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 26482, rend_intergenic: 15381 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28462, rend_intergenic: 26792 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 33355, rend_intergenic: 29837 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 35031, rend_intergenic: 34590 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40030, rend_intergenic: 35999 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50845, rend_intergenic: 42296 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55241, rend_intergenic: 52457 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 67771, rend_intergenic: 62638 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 72231, rend_intergenic: 68616 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 82839, rend_intergenic: 76100 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100637, rend_intergenic: 89000 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114642, rend_intergenic: 100643 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 119756, rend_intergenic: 115362 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131118, rend_intergenic: 119962 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 149006, rend_intergenic: 134183 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 161645, rend_intergenic: 150918 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 177011, rend_intergenic: 163465 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 183512, rend_intergenic: 177251 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 191177, rend_intergenic: 186130 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 195102, rend_intergenic: 193126 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 207507, rend_intergenic: 195487 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 219006, rend_intergenic: 207741 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 29 predictions persist after filtering for low support -building DP trellis -building trellis in range 248083 - 270399 -exon list size: 22 building trellis 4.2 8.3 12.5 16.7 20.8 25.0 29.2 33.3 37.5 41.7 45.8 50.0 54.2 58.3 62.5 66.7 70.8 75.0 79.2 83.3 87.5 91.7 95.8 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 248083 - 265917 -exon list size: 18 building trellis 5.0 10.0 15.0 20.0 25.0 30.0 35.0 40.0 45.0 50.0 55.0 60.0 65.0 70.0 75.0 80.0 85.0 90.0 95.0 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 252471 - 265917 -exon list size: 13 building trellis 6.7 13.3 20.0 26.7 33.3 40.0 46.7 53.3 60.0 66.7 73.3 80.0 86.7 93.3 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support