-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_22/scaffold_22_10018533-10298646

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.89229_t
Valid prediction for snap_scaffold_22-snap.2127-T1
Valid prediction for snap_scaffold_22-snap.2150-T1
Valid prediction for GeneMark_model.89188_t
Valid prediction for GlimmerHMM_glimmerT_51330-T1
Valid prediction for GeneMark_model.89198_t
Valid prediction for snap_scaffold_22-snap.2102-T1
Valid prediction for GlimmerHMM_glimmerT_51328-T1
Valid prediction for GeneMark_model.89230_t
Valid prediction for GlimmerHMM_glimmerT_51325-T1
Valid prediction for GeneMark_model.89195_t
Valid prediction for snap_scaffold_22-snap.2126-T1
Valid prediction for Augustus_model.g34427.t1
Valid prediction for GeneMark_model.89202_t
Valid prediction for GeneMark_model.89167_t
Valid prediction for GeneMark_model.89169_t
Valid prediction for GlimmerHMM_glimmerT_51307-T1
Valid prediction for GeneMark_model.89184_t
Valid prediction for GeneMark_model.89219_t
Valid prediction for GeneMark_model.89179_t
Valid prediction for snap_scaffold_22-snap.2148-T1
Valid prediction for snap_scaffold_22-snap.2139-T1
Valid prediction for Augustus_model.g34429.t1
Valid prediction for GeneMark_model.89193_t
Valid prediction for GeneMark_model.89160_t
Valid prediction for GeneMark_model.89185_t
Valid prediction for snap_scaffold_22-snap.2096-T1
Valid prediction for GeneMark_model.89181_t
Valid prediction for GeneMark_model.89201_t
Valid prediction for GeneMark_model.89208_t
Valid prediction for GeneMark_model.89183_t
Valid prediction for GeneMark_model.89222_t
Valid prediction for GeneMark_model.89210_t
Valid prediction for snap_scaffold_22-snap.2138-T1
Valid prediction for GeneMark_model.89231_t
Valid prediction for GeneMark_model.89171_t
Valid prediction for snap_scaffold_22-snap.2109-T1
Valid prediction for GlimmerHMM_glimmerT_51313-T1
Valid prediction for GlimmerHMM_glimmerT_51309-T1
Valid prediction for GeneMark_model.89158_t
Valid prediction for GeneMark_model.89180_t
Valid prediction for GeneMark_model.89162_t
Valid prediction for GlimmerHMM_glimmerT_51314-T1
Valid prediction for snap_scaffold_22-snap.2106-T1
Valid prediction for GlimmerHMM_glimmerT_51318-T1
Valid prediction for Augustus_model.g34431.t1
Couldn't classify 39439, 39602
Sorry, prediction pasa_asmbl_29632.p1 fails validation.
(TTG)	 GT	39439-39602	GT	AGG
(TAA)	 AG	40756-40787	GT	CCG
(CGT)	 AG	41533-41717	GT	AGG
(GTC)	 AG	42022-42126	CA	GAC
-recovered pasa_asmbl_29632.p1, terminal, 42022, 42126
-recovered pasa_asmbl_29632.p1, internal, 40756, 40787
-recovered pasa_asmbl_29632.p1, internal, 41533, 41717
Valid prediction for GeneMark_model.89224_t
Valid prediction for snap_scaffold_22-snap.2134-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_22-snap.2145-T1
Valid prediction for GeneMark_model.89165_t
Valid prediction for Augustus_model.g34430.t1
Valid prediction for Augustus_model.g34421.t1
Valid prediction for CodingQuarry_transcript_34211-T1
Valid prediction for Augustus_model.g34424.t1
Valid prediction for GeneMark_model.89215_t
Valid prediction for GeneMark_model.89168_t
Valid prediction for snap_scaffold_22-snap.2104-T1
Couldn't classify 16961, 17102
Sorry, prediction CodingQuarry_transcript_34209-T1 fails validation.
(ATG)	 CC	15198-15333	GT	AGG
(GTG)	 AG	16276-16498	GT	GGG
(GGA)	 CA	16961-17102	AA	AGA
-recovered CodingQuarry_transcript_34209-T1, initial, 15198, 15333
-recovered CodingQuarry_transcript_34209-T1, internal, 16276, 16498
Valid prediction for GlimmerHMM_glimmerT_51329-T1
Valid prediction for snap_scaffold_22-snap.2099-T1
Valid prediction for Augustus_model.g34433.t1
Valid prediction for snap_scaffold_22-snap.2141-T1
Valid prediction for Augustus_model.g34432.t1
Valid prediction for snap_scaffold_22-snap.2108-T1
Valid prediction for GeneMark_model.89206_t
Valid prediction for GeneMark_model.89156_t
Valid prediction for snap_scaffold_22-snap.2129-T1
Valid prediction for GeneMark_model.89175_t
Valid prediction for GeneMark_model.89228_t
Valid prediction for snap_scaffold_22-snap.2140-T1
Valid prediction for GeneMark_model.89213_t
Valid prediction for snap_scaffold_22-snap.2146-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for snap_scaffold_22-snap.2144-T1
Couldn't classify 97242, 97266
Couldn't classify 100078, 100192
Sorry, prediction pasa_asmbl_29808.p1 fails validation.
(GAC)	 AC	97242-97266	GT	AGG
(GGC)	 AG	97585-97620	GT	TGG
(ACC)	 AG	98114-98223	GT	AGG
(GTG)	 AG	99163-99272	GT	AAG
(TGT)	 AG	100078-100192	AA	ACA
-recovered pasa_asmbl_29808.p1, internal, 97585, 97620
-recovered pasa_asmbl_29808.p1, internal, 98114, 98223
-recovered pasa_asmbl_29808.p1, internal, 99163, 99272
Valid prediction for GeneMark_model.89217_t
Couldn't classify 89801, 89948
Couldn't classify 91411, 91495
Sorry, prediction pasa_asmbl_29637.p1 fails validation.
(CTG)	 AG	89801-89948	GT	CGG
(ATT)	 AG	90059-90160	GT	TGG
(GAG)	 AG	90286-90359	GT	AGG
(GGT)	 AG	90567-90663	GT	CAG
(AGA)	 AG	91014-91098	GT	GAG
(GTA)	 AG	91411-91495	GT	ACG
-recovered pasa_asmbl_29637.p1, internal, 89801, 89948
-recovered pasa_asmbl_29637.p1, internal, 90059, 90160
-recovered pasa_asmbl_29637.p1, internal, 90286, 90359
-recovered pasa_asmbl_29637.p1, internal, 90567, 90663
-recovered pasa_asmbl_29637.p1, internal, 91014, 91098
-recovered pasa_asmbl_29637.p1, internal, 91411, 91495
Valid prediction for GlimmerHMM_glimmerT_51324-T1
Couldn't classify 74405, 74492
Couldn't classify 75655, 75747
Sorry, prediction pasa_asmbl_29636.p1 fails validation.
(ATC)	 TG	74405-74492	GT	CAG
(CCC)	 AG	74703-74796	GT	AAG
(GTT)	 AG	75329-75431	GT	AGG
(GGT)	 AG	75655-75747	AG	AGA
-recovered pasa_asmbl_29636.p1, internal, 74703, 74796
-recovered pasa_asmbl_29636.p1, internal, 75329, 75431
Valid prediction for Augustus_model.g34419.t1
Valid prediction for GeneMark_model.89212_t
Valid prediction for snap_scaffold_22-snap.2114-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_51319-T1
Valid prediction for GlimmerHMM_glimmerT_51332-T1
Valid prediction for Augustus_model.g34434.t1
Valid prediction for GeneMark_model.89199_t
Valid prediction for GeneMark_model.89204_t
Valid prediction for snap_scaffold_22-snap.2125-T1
Valid prediction for GeneMark_model.89200_t
add_exon() Sorry, GeneMark_model.89200_t 168957-169293-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_51310-T1
Valid prediction for GlimmerHMM_glimmerT_51322-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_22-snap.2137-T1
Couldn't classify 26029, 26097
Couldn't classify 27423, 27545
Sorry, prediction pasa_asmbl_30363.p1 fails validation.
(CAA)	 TA	26029-26097	GC	AGG
(GCC)	 AG	26119-26373	GT	AGG
(CTG)	 AG	26618-26737	GT	TGG
(GTG)	 AG	27423-27545	GT	AGG
-recovered pasa_asmbl_30363.p1, internal, 26119, 26373
-recovered pasa_asmbl_30363.p1, internal, 26618, 26737
-recovered pasa_asmbl_30363.p1, internal, 27423, 27545
Valid prediction for GeneMark_model.89196_t
Valid prediction for GeneMark_model.89225_t
Valid prediction for snap_scaffold_22-snap.2130-T1
Valid prediction for GlimmerHMM_glimmerT_51327-T1
Couldn't classify 33278, 33378
Couldn't classify 33505, 34933
Sorry, prediction pasa_asmbl_30362.p1 fails validation.
(ACG)	 AG	33278-33378	GT	AGG
(GCC)	 AG	33505-34933	GT	AGG
-recovered pasa_asmbl_30362.p1, internal, 33278, 33378
-recovered pasa_asmbl_30362.p1, internal, 33505, 34933
Valid prediction for snap_scaffold_22-snap.2116-T1
Valid prediction for GeneMark_model.89154_t
Valid prediction for snap_scaffold_22-snap.2123-T1
Valid prediction for snap_scaffold_22-snap.2107-T1
Valid prediction for GlimmerHMM_glimmerT_51336-T1
Valid prediction for GlimmerHMM_glimmerT_51320-T1
Valid prediction for snap_scaffold_22-snap.2097-T1
Valid prediction for GlimmerHMM_glimmerT_51316-T1
Valid prediction for snap_scaffold_22-snap.2136-T1
Couldn't classify 30394, 30507
Couldn't classify 32554, 32613
Sorry, prediction pasa_asmbl_30499.p1 fails validation.
(GGG)	 GT	30394-30507	GT	TGG
(GCC)	 AG	31689-31814	GT	AGG
(GAA)	 AG	31930-31971	GT	AGG
(TGC)	 AG	32554-32613	GT	TGG
-recovered pasa_asmbl_30499.p1, internal, 31689, 31814
-recovered pasa_asmbl_30499.p1, internal, 31930, 31971
-recovered pasa_asmbl_30499.p1, internal, 32554, 32613
Valid prediction for GlimmerHMM_glimmerT_51317-T1
Valid prediction for GeneMark_model.89211_t
Valid prediction for Augustus_model.g34435.t1
Couldn't classify 21656, 22030
Sorry, prediction pasa_asmbl_30364.p2 fails validation.
(ATG)	 GT	21656-22030	TC	CAT
Valid prediction for GeneMark_model.89189_t
Valid prediction for GeneMark_model.89192_t
Valid prediction for GeneMark_model.89177_t
Valid prediction for Augustus_model.g34436.t1
Valid prediction for Augustus_model.g34426.t1
Couldn't classify 63604, 63738
Couldn't classify 64807, 64977
Sorry, prediction pasa_asmbl_30355.p1 fails validation.
(CAC)	 AA	63604-63738	GT	AGG
(ACT)	 AG	64476-64538	GT	AGG
(GAG)	 AG	64807-64977	AA	TCA
-recovered pasa_asmbl_30355.p1, internal, 64476, 64538
Valid prediction for GeneMark_model.89163_t
Valid prediction for GeneMark_model.89190_t
Valid prediction for Augustus_model.g34420.t1
Valid prediction for CodingQuarry_transcript_34213-T1
Valid prediction for snap_scaffold_22-snap.2120-T1
Valid prediction for GeneMark_model.89223_t
Valid prediction for GeneMark_model.89227_t
Valid prediction for snap_scaffold_22-snap.2101-T1
Valid prediction for GlimmerHMM_glimmerT_51335-T1
Valid prediction for snap_scaffold_22-snap.2135-T1
Valid prediction for GlimmerHMM_glimmerT_51333-T1
Valid prediction for snap_scaffold_22-snap.2132-T1
Valid prediction for GeneMark_model.89186_t
Couldn't classify 258126, 258298
Sorry, prediction pasa_asmbl_30345.p2 fails validation.
(CAG)	 CT	258126-258298	GT	AGG
(GTG)	 AG	258556-258724	AG	AGA
-recovered pasa_asmbl_30345.p2, terminal, 258556, 258724
Valid prediction for snap_scaffold_22-snap.2100-T1
Valid prediction for GeneMark_model.89216_t
Valid prediction for GeneMark_model.89173_t
Valid prediction for GeneMark_model.89159_t
Valid prediction for GeneMark_model.89155_t
Valid prediction for GlimmerHMM_glimmerT_51334-T1
Valid prediction for GeneMark_model.89187_t
Valid prediction for snap_scaffold_22-snap.2119-T1
Valid prediction for Augustus_model.g34428.t1
Valid prediction for HiQ_model.g34423.t1
Valid prediction for snap_scaffold_22-snap.2111-T1
Valid prediction for snap_scaffold_22-snap.2147-T1
Valid prediction for snap_scaffold_22-snap.2122-T1
Valid prediction for snap_scaffold_22-snap.2121-T1
Valid prediction for GlimmerHMM_glimmerT_51308-T1
Valid prediction for snap_scaffold_22-snap.2124-T1
Couldn't classify 55321, 55446
Sorry, prediction pasa_asmbl_30359.p1 fails validation.
(ATG)	 CC	49702-49737	GT	GAG
(GCC)	 AG	51079-51193	GT	AAG
(TGA)	 AG	51489-51733	GT	AGG
(GTG)	 AG	52212-52340	GT	AGG
(ACG)	 AG	53068-53130	GT	ACG
(GTA)	 AG	53606-53656	GT	AGG
(ATG)	 AG	54251-54281	GT	CCG
(GAC)	 AG	54885-55000	GT	CGG
(GTG)	 AG	55321-55446	AG	AGA
-recovered pasa_asmbl_30359.p1, initial, 49702, 49737
-recovered pasa_asmbl_30359.p1, initial, 54251, 54281
-recovered pasa_asmbl_30359.p1, internal, 51079, 51193
-recovered pasa_asmbl_30359.p1, internal, 51489, 51733
-recovered pasa_asmbl_30359.p1, internal, 52212, 52340
-recovered pasa_asmbl_30359.p1, internal, 53068, 53130
-recovered pasa_asmbl_30359.p1, internal, 53606, 53656
-recovered pasa_asmbl_30359.p1, internal, 54251, 54281
-recovered pasa_asmbl_30359.p1, internal, 54885, 55000
Valid prediction for snap_scaffold_22-snap.2110-T1
Valid prediction for snap_scaffold_22-snap.2113-T1
Couldn't classify 24918, 25722
Sorry, prediction pasa_asmbl_30529.p1 fails validation.
(ATG)	 GG	24532-24572	GT	ACG
(AAA)	 AG	24918-25722	AC	CCA
-recovered pasa_asmbl_30529.p1, initial, 24532, 24572
Valid prediction for GeneMark_model.89214_t
Valid prediction for GeneMark_model.89220_t
Valid prediction for snap_scaffold_22-snap.2105-T1
Valid prediction for Augustus_model.g34425.t1
Valid prediction for GeneMark_model.89166_t
Valid prediction for snap_scaffold_22-snap.2128-T1
Valid prediction for pasa_asmbl_30360.p1
Valid prediction for GeneMark_model.89182_t
Valid prediction for GeneMark_model.89170_t
Valid prediction for GeneMark_model.89203_t
Valid prediction for GlimmerHMM_glimmerT_51311-T1
Valid prediction for snap_scaffold_22-snap.2118-T1
Valid prediction for GlimmerHMM_glimmerT_51312-T1
Valid prediction for snap_scaffold_22-snap.2133-T1
Valid prediction for GeneMark_model.89161_t
Valid prediction for snap_scaffold_22-snap.2143-T1
Valid prediction for GeneMark_model.89207_t
Couldn't classify 57842, 57863
Couldn't classify 61373, 61549
Sorry, prediction pasa_asmbl_30357.p1 fails validation.
(AGA)	 TC	57842-57863	GT	GAG
(TGG)	 AG	58741-58844	GT	CGG
(ATG)	 AG	59225-59293	GT	GAG
(TTT)	 AG	59616-59659	GT	TGG
(GGA)	 AG	59808-59890	GT	TGG
(ATG)	 AG	60501-60530	GT	CAG
(TGG)	 AG	60803-60918	GT	AGG
(GGG)	 AG	61014-61127	GT	AGG
(AAG)	 AG	61373-61549	GG	ACG
-recovered pasa_asmbl_30357.p1, initial, 59225, 59293
-recovered pasa_asmbl_30357.p1, initial, 60501, 60530
-recovered pasa_asmbl_30357.p1, internal, 58741, 58844
-recovered pasa_asmbl_30357.p1, internal, 59225, 59293
-recovered pasa_asmbl_30357.p1, internal, 59616, 59659
-recovered pasa_asmbl_30357.p1, internal, 59808, 59890
-recovered pasa_asmbl_30357.p1, internal, 60501, 60530
-recovered pasa_asmbl_30357.p1, internal, 60803, 60918
-recovered pasa_asmbl_30357.p1, internal, 61014, 61127
Valid prediction for GeneMark_model.89172_t
Valid prediction for GeneMark_model.89164_t
Valid prediction for GeneMark_model.89178_t
Valid prediction for GeneMark_model.89221_t
Valid prediction for GlimmerHMM_glimmerT_51331-T1
Valid prediction for GlimmerHMM_glimmerT_51321-T1
Valid prediction for GeneMark_model.89174_t
Valid prediction for snap_scaffold_22-snap.2117-T1
Valid prediction for GeneMark_model.89194_t
Valid prediction for snap_scaffold_22-snap.2115-T1
Valid prediction for snap_scaffold_22-snap.2112-T1
Valid prediction for CodingQuarry_transcript_34214-T1
Valid prediction for snap_scaffold_22-snap.2142-T1
Valid prediction for GlimmerHMM_glimmerT_51326-T1
Valid prediction for GeneMark_model.89209_t
Valid prediction for snap_scaffold_22-snap.2131-T1
Valid prediction for Augustus_model.g34437.t1
Valid prediction for GeneMark_model.89157_t
Valid prediction for GeneMark_model.89176_t
Valid prediction for CodingQuarry_transcript_34212-T1
Valid prediction for GeneMark_model.89197_t
Valid prediction for GeneMark_model.89205_t
Valid prediction for Augustus_model.g34422.t1
Valid prediction for GlimmerHMM_glimmerT_51315-T1
Valid prediction for snap_scaffold_22-snap.2103-T1
Couldn't classify 254392, 254677
Sorry, prediction pasa_asmbl_30347.p1 fails validation.
(ATG)	 TC	253941-254179	GT	AGG
(TAA)	 AG	254392-254677	GT	AGG
-recovered pasa_asmbl_30347.p1, initial, 253941, 254179
-recovered pasa_asmbl_30347.p1, internal, 254392, 254677
Valid prediction for snap_scaffold_22-snap.2098-T1
Valid prediction for GlimmerHMM_glimmerT_51323-T1
Valid prediction for GeneMark_model.89218_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7329, rend_intergenic: 6191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18309, rend_intergenic: 8811  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35442, rend_intergenic: 32047  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44618, rend_intergenic: 35594  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61950, rend_intergenic: 50582  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74520, rend_intergenic: 65059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103190, rend_intergenic: 74654  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145393, rend_intergenic: 105900  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175604, rend_intergenic: 147266  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178168, rend_intergenic: 175692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184775, rend_intergenic: 180319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 218907, rend_intergenic: 206510  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 244172, rend_intergenic: 218933  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 251466, rend_intergenic: 244202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 260517, rend_intergenic: 252089  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 263044, rend_intergenic: 261105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 266271, rend_intergenic: 263157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 280114
-exon list size: 1268


building trellis

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13.9    
14.0    
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14.3    
14.3    
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14.9    
15.0    
15.0    
15.1    
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15.4    
15.4    
15.5    
15.6    
15.7    
15.7    
15.8    
15.9    
16.0    
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16.1    
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16.5    
16.5    
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16.8    
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16.9    
17.0    
17.1    
17.2    
17.2    
17.3    
17.4    
17.5    
17.6    
17.6    
17.7    
17.8    
17.9    
18.0    
18.0    
18.1    
18.2    
18.3    
18.3    
18.4    
18.5    
18.6    
18.7    
18.7    
18.8    
18.9    
19.0    
19.1    
19.1    
19.2    
19.3    
19.4    
19.4    
19.5    
19.6    
19.7    
19.8    
19.8    
19.9    
20.0    
20.1    
20.2    
20.2    
20.3    
20.4    
20.5    
20.6    
20.6    
20.7    
20.8    
20.9    
20.9    
21.0    
21.1    
21.2    
21.3    
21.3    
21.4    
21.5    
21.6    
21.7    
21.7    
21.8    
21.9    
22.0    
22.0    
22.1    
22.2    
22.3    
22.4    
22.4    
22.5    
22.6    
22.7    
22.8    
22.8    
22.9    
23.0    
23.1    
23.1    
23.2    
23.3    
23.4    
23.5    
23.5    
23.6    
23.7    
23.8    
23.9    
23.9    
24.0    
24.1    
24.2    
24.3    
24.3    
24.4    
24.5    
24.6    
24.6    
24.7    
24.8    
24.9    
25.0    
25.0    
25.1    
25.2    
25.3    
25.4    
25.4    
25.5    
25.6    
25.7    
25.7    
25.8    
25.9    
26.0    
26.1    
26.1    
26.2    
26.3    
26.4    
26.5    
26.5    
26.6    
26.7    
26.8    
26.9    
26.9    
27.0    
27.1    
27.2    
27.2    
27.3    
27.4    
27.5    
27.6    
27.6    
27.7    
27.8    
27.9    
28.0    
28.0    
28.1    
28.2    
28.3    
28.3    
28.4    
28.5    
28.6    
28.7    
28.7    
28.8    
28.9    
29.0    
29.1    
29.1    
29.2    
29.3    
29.4    
29.4    
29.5    
29.6    
29.7    
29.8    
29.8    
29.9    
30.0    
30.1    
30.2    
30.2    
30.3    
30.4    
30.5    
30.6    
30.6    
30.7    
30.8    
30.9    
30.9    
31.0    
31.1    
31.2    
31.3    
31.3    
31.4    
31.5    
31.6    
31.7    
31.7    
31.8    
31.9    
32.0    
32.0    
32.1    
32.2    
32.3    
32.4    
32.4    
32.5    
32.6    
32.7    
32.8    
32.8    
32.9    
33.0    
33.1    
33.1    
33.2    
33.3    
33.4    
33.5    
33.5    
33.6    
33.7    
33.8    
33.9    
33.9    
34.0    
34.1    
34.2    
34.3    
34.3    
34.4    
34.5    
34.6    
34.6    
34.7    
34.8    
34.9    
35.0    
35.0    
35.1    
35.2    
35.3    
35.4    
35.4    
35.5    
35.6    
35.7    
35.7    
35.8    
35.9    
36.0    
36.1    
36.1    
36.2    
36.3    
36.4    
36.5    
36.5    
36.6    
36.7    
36.8    
36.9    
36.9    
37.0    
37.1    
37.2    
37.2    
37.3    
37.4    
37.5    
37.6    
37.6    
37.7    
37.8    
37.9    
38.0    
38.0    
38.1    
38.2    
38.3    
38.3    
38.4    
38.5    
38.6    
38.7    
38.7    
38.8    
38.9    
39.0    
39.1    
39.1    
39.2    
39.3    
39.4    
39.4    
39.5    
39.6    
39.7    
39.8    
39.8    
39.9    
40.0    
40.1    
40.2    
40.2    
40.3    
40.4    
40.5    
40.6    
40.6    
40.7    
40.8    
40.9    
40.9    
41.0    
41.1    
41.2    
41.3    
41.3    
41.4    
41.5    
41.6    
41.7    
41.7    
41.8    
41.9    
42.0    
42.0    
42.1    
42.2    
42.3    
42.4    
42.4    
42.5    
42.6    
42.7    
42.8    
42.8    
42.9    
43.0    
43.1    
43.1    
43.2    
43.3    
43.4    
43.5    
43.5    
43.6    
43.7    
43.8    
43.9    
43.9    
44.0    
44.1    
44.2    
44.3    
44.3    
44.4    
44.5    
44.6    
44.6    
44.7    
44.8    
44.9    
45.0    
45.0    
45.1    
45.2    
45.3    
45.4    
45.4    
45.5    
45.6    
45.7    
45.7    
45.8    
45.9    
46.0    
46.1    
46.1    
46.2    
46.3    
46.4    
46.5    
46.5    
46.6    
46.7    
46.8    
46.9    
46.9    
47.0    
47.1    
47.2    
47.2    
47.3    
47.4    
47.5    
47.6    
47.6    
47.7    
47.8    
47.9    
48.0    
48.0    
48.1    
48.2    
48.3    
48.3    
48.4    
48.5    
48.6    
48.7    
48.7    
48.8    
48.9    
49.0    
49.1    
49.1    
49.2    
49.3    
49.4    
49.4    
49.5    
49.6    
49.7    
49.8    
49.8    
49.9    
50.0    
50.1    
50.2    
50.2    
50.3    
50.4    
50.5    
50.6    
50.6    
50.7    
50.8    
50.9    
50.9    
51.0    
51.1    
51.2    
51.3    
51.3    
51.4    
51.5    
51.6    
51.7    
51.7    
51.8    
51.9    
52.0    
52.0    
52.1    
52.2    
52.3    
52.4    
52.4    
52.5    
52.6    
52.7    
52.8    
52.8    
52.9    
53.0    
53.1    
53.1    
53.2    
53.3    
53.4    
53.5    
53.5    
53.6    
53.7    
53.8    
53.9    
53.9    
54.0    
54.1    
54.2    
54.3    
54.3    
54.4    
54.5    
54.6    
54.6    
54.7    
54.8    
54.9    
55.0    
55.0    
55.1    
55.2    
55.3    
55.4    
55.4    
55.5    
55.6    
55.7    
55.7    
55.8    
55.9    
56.0    
56.1    
56.1    
56.2    
56.3    
56.4    
56.5    
56.5    
56.6    
56.7    
56.8    
56.9    
56.9    
57.0    
57.1    
57.2    
57.2    
57.3    
57.4    
57.5    
57.6    
57.6    
57.7    
57.8    
57.9    
58.0    
58.0    
58.1    
58.2    
58.3    
58.3    
58.4    
58.5    
58.6    
58.7    
58.7    
58.8    
58.9    
59.0    
59.1    
59.1    
59.2    
59.3    
59.4    
59.4    
59.5    
59.6    
59.7    
59.8    
59.8    
59.9    
60.0    
60.1    
60.2    
60.2    
60.3    
60.4    
60.5    
60.6    
60.6    
60.7    
60.8    
60.9    
60.9    
61.0    
61.1    
61.2    
61.3    
61.3    
61.4    
61.5    
61.6    
61.7    
61.7    
61.8    
61.9    
62.0    
62.0    
62.1    
62.2    
62.3    
62.4    
62.4    
62.5    
62.6    
62.7    
62.8    
62.8    
62.9    
63.0    
63.1    
63.1    
63.2    
63.3    
63.4    
63.5    
63.5    
63.6    
63.7    
63.8    
63.9    
63.9    
64.0    
64.1    
64.2    
64.3    
64.3    
64.4    
64.5    
64.6    
64.6    
64.7    
64.8    
64.9    
65.0    
65.0    
65.1    
65.2    
65.3    
65.4    
65.4    
65.5    
65.6    
65.7    
65.7    
65.8    
65.9    
66.0    
66.1    
66.1    
66.2    
66.3    
66.4    
66.5    
66.5    
66.6    
66.7    
66.8    
66.9    
66.9    
67.0    
67.1    
67.2    
67.2    
67.3    
67.4    
67.5    
67.6    
67.6    
67.7    
67.8    
67.9    
68.0    
68.0    
68.1    
68.2    
68.3    
68.3    
68.4    
68.5    
68.6    
68.7    
68.7    
68.8    
68.9    
69.0    
69.1    
69.1    
69.2    
69.3    
69.4    
69.4    
69.5    
69.6    
69.7    
69.8    
69.8    
69.9    
70.0    
70.1    
70.2    
70.2    
70.3    
70.4    
70.5    
70.6    
70.6    
70.7    
70.8    
70.9    
70.9    
71.0    
71.1    
71.2    
71.3    
71.3    
71.4    
71.5    
71.6    
71.7    
71.7    
71.8    
71.9    
72.0    
72.0    
72.1    
72.2    
72.3    
72.4    
72.4    
72.5    
72.6    
72.7    
72.8    
72.8    
72.9    
73.0    
73.1    
73.1    
73.2    
73.3    
73.4    
73.5    
73.5    
73.6    
73.7    
73.8    
73.9    
73.9    
74.0    
74.1    
74.2    
74.3    
74.3    
74.4    
74.5    
74.6    
74.6    
74.7    
74.8    
74.9    
75.0    
75.0    
75.1    
75.2    
75.3    
75.4    
75.4    
75.5    
75.6    
75.7    
75.7    
75.8    
75.9    
76.0    
76.1    
76.1    
76.2    
76.3    
76.4    
76.5    
76.5    
76.6    
76.7    
76.8    
76.9    
76.9    
77.0    
77.1    
77.2    
77.2    
77.3    
77.4    
77.5    
77.6    
77.6    
77.7    
77.8    
77.9    
78.0    
78.0    
78.1    
78.2    
78.3    
78.3    
78.4    
78.5    
78.6    
78.7    
78.7    
78.8    
78.9    
79.0    
79.1    
79.1    
79.2    
79.3    
79.4    
79.4    
79.5    
79.6    
79.7    
79.8    
79.8    
79.9    
80.0    
80.1    
80.2    
80.2    
80.3    
80.4    
80.5    
80.6    
80.6    
80.7    
80.8    
80.9    
80.9    
81.0    
81.1    
81.2    
81.3    
81.3    
81.4    
81.5    
81.6    
81.7    
81.7    
81.8    
81.9    
82.0    
82.0    
82.1    
82.2    
82.3    
82.4    
82.4    
82.5    
82.6    
82.7    
82.8    
82.8    
82.9    
83.0    
83.1    
83.1    
83.2    
83.3    
83.4    
83.5    
83.5    
83.6    
83.7    
83.8    
83.9    
83.9    
84.0    
84.1    
84.2    
84.3    
84.3    
84.4    
84.5    
84.6    
84.6    
84.7    
84.8    
84.9    
85.0    
85.0    
85.1    
85.2    
85.3    
85.4    
85.4    
85.5    
85.6    
85.7    
85.7    
85.8    
85.9    
86.0    
86.1    
86.1    
86.2    
86.3    
86.4    
86.5    
86.5    
86.6    
86.7    
86.8    
86.9    
86.9    
87.0    
87.1    
87.2    
87.2    
87.3    
87.4    
87.5    
87.6    
87.6    
87.7    
87.8    
87.9    
88.0    
88.0    
88.1    
88.2    
88.3    
88.3    
88.4    
88.5    
88.6    
88.7    
88.7    
88.8    
88.9    
89.0    
89.1    
89.1    
89.2    
89.3    
89.4    
89.4    
89.5    
89.6    
89.7    
89.8    
89.8    
89.9    
90.0    
90.1    
90.2    
90.2    
90.3    
90.4    
90.5    
90.6    
90.6    
90.7    
90.8    
90.9    
90.9    
91.0    
91.1    
91.2    
91.3    
91.3    
91.4    
91.5    
91.6    
91.7    
91.7    
91.8    
91.9    
92.0    
92.0    
92.1    
92.2    
92.3    
92.4    
92.4    
92.5    
92.6    
92.7    
92.8    
92.8    
92.9    
93.0    
93.1    
93.1    
93.2    
93.3    
93.4    
93.5    
93.5    
93.6    
93.7    
93.8    
93.9    
93.9    
94.0    
94.1    
94.2    
94.3    
94.3    
94.4    
94.5    
94.6    
94.6    
94.7    
94.8    
94.9    
95.0    
95.0    
95.1    
95.2    
95.3    
95.4    
95.4    
95.5    
95.6    
95.7    
95.7    
95.8    
95.9    
96.0    
96.1    
96.1    
96.2    
96.3    
96.4    
96.5    
96.5    
96.6    
96.7    
96.8    
96.9    
96.9    
97.0    
97.1    
97.2    
97.2    
97.3    
97.4    
97.5    
97.6    
97.6    
97.7    
97.8    
97.9    
98.0    
98.0    
98.1    
98.2    
98.3    
98.3    
98.4    
98.5    
98.6    
98.7    
98.7    
98.8    
98.9    
99.0    
99.1    
99.1    
99.2    
99.3    
99.4    
99.4    
99.5    
99.6    
99.7    
99.8    
99.8    
99.9    
-found 49 predictions from path traversal
Error with prediction: snap lend_intergenic: 7329, rend_intergenic: 6191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18309, rend_intergenic: 8811  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35442, rend_intergenic: 32047  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44618, rend_intergenic: 35594  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61950, rend_intergenic: 50582  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74520, rend_intergenic: 65059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103190, rend_intergenic: 74654  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145393, rend_intergenic: 105900  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175604, rend_intergenic: 147266  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178168, rend_intergenic: 175692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184775, rend_intergenic: 180319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 218907, rend_intergenic: 206510  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 244172, rend_intergenic: 218933  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 251466, rend_intergenic: 244202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 260517, rend_intergenic: 252089  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 263044, rend_intergenic: 261105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 266271, rend_intergenic: 263157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 26 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 263401 - 280114
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 263401 - 276172
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support