-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2196

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 82, 123
Sorry, prediction GeneMark_model.110122_t fails validation.
(GAG)	 AG	82-123	GT	GAG
(TGG)	 AG	160-270	GT	GAG
(AGA)	 AG	296-376	GT	AAG
(AGG)	 AG	412-546	GC	GGG
(GGA)	 AG	580-684	GT	CTG
(AGG)	 AG	932-974	GG	GAG
-recovered GeneMark_model.110122_t, terminal, 932, 974
-recovered GeneMark_model.110122_t, internal, 82, 123
-recovered GeneMark_model.110122_t, internal, 160, 270
-recovered GeneMark_model.110122_t, internal, 296, 376
-recovered GeneMark_model.110122_t, internal, 412, 546
-recovered GeneMark_model.110122_t, internal, 580, 684

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1486
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support