-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2195

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 36, 56
Couldn't classify 1404, 1460
Sorry, prediction GeneMark_model.110121_t fails validation.
(GGA)	 AG	36-56	GT	GAG
(AGA)	 AG	78-101	GT	AGG
(AGA)	 AG	1051-1155	GT	GAG
(TGA)	 AG	1179-1265	GT	GAG
(TAG)	 AG	1290-1370	GT	GAG
(TAG)	 AG	1404-1460	GT	GAG
-recovered GeneMark_model.110121_t, internal, 36, 56
-recovered GeneMark_model.110121_t, internal, 78, 101
-recovered GeneMark_model.110121_t, internal, 1051, 1155
-recovered GeneMark_model.110121_t, internal, 1179, 1265
-recovered GeneMark_model.110121_t, internal, 1290, 1370
-recovered GeneMark_model.110121_t, internal, 1404, 1460

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1489
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support