-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2194

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1417, 1461
Sorry, prediction GeneMark_model.110120_t fails validation.
(ATG)	 AG	631-666	GT	GAG
(TGG)	 AG	694-717	GT	GTG
(TGG)	 AG	738-758	GT	CAG
(AGG)	 AG	780-815	GT	TCG
(TCA)	 AG	838-882	GT	TAG
(TGG)	 AG	904-936	GT	GAG
(TGG)	 AG	964-999	GT	GCG
(TGG)	 AG	1088-1123	GT	TCG
(AGG)	 AG	1148-1183	GT	GCG
(TGG)	 AG	1208-1240	GT	GAG
(GTG)	 AG	1270-1287	GT	GCG
(TGG)	 AG	1312-1347	GT	TCG
(AGG)	 AG	1372-1395	GT	GTG
(GAG)	 AG	1417-1461	GT	TCG
add_exon() Sorry, GeneMark_model.110120_t 631-666-initial-1 is invalid.
-recovered GeneMark_model.110120_t, initial, 631, 666
-recovered GeneMark_model.110120_t, internal, 631, 666
-recovered GeneMark_model.110120_t, internal, 694, 717
-recovered GeneMark_model.110120_t, internal, 738, 758
-recovered GeneMark_model.110120_t, internal, 780, 815
-recovered GeneMark_model.110120_t, internal, 838, 882
-recovered GeneMark_model.110120_t, internal, 904, 936
-recovered GeneMark_model.110120_t, internal, 964, 999
-recovered GeneMark_model.110120_t, internal, 1088, 1123
-recovered GeneMark_model.110120_t, internal, 1148, 1183
-recovered GeneMark_model.110120_t, internal, 1208, 1240
-recovered GeneMark_model.110120_t, internal, 1270, 1287
-recovered GeneMark_model.110120_t, internal, 1312, 1347
-recovered GeneMark_model.110120_t, internal, 1372, 1395
-recovered GeneMark_model.110120_t, internal, 1417, 1461

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1489
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support