-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2193

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 89, 450
Couldn't classify 666, 830
Sorry, prediction snap_scaffold_2193-snap.1-T1 fails validation.
(GCG)	 AG	89-450	GT	AGG
(TAG)	 AG	666-830	GT	AGG
-recovered snap_scaffold_2193-snap.1-T1, internal, 89, 450
-recovered snap_scaffold_2193-snap.1-T1, internal, 666, 830

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 680, 836
Couldn't classify 1297, 1377
Sorry, prediction GeneMark_model.110119_t fails validation.
(GAG)	 AG	680-836	GT	GGG
(AAG)	 AG	863-883	GT	GAG
(CAG)	 AG	907-933	GT	CAG
(AGA)	 AG	955-960	GT	CAG
(AAC)	 AG	1082-1271	GT	CTG
(GCC)	 AG	1297-1377	GT	TTG
-recovered GeneMark_model.110119_t, internal, 680, 836
-recovered GeneMark_model.110119_t, internal, 863, 883
-recovered GeneMark_model.110119_t, internal, 907, 933
-recovered GeneMark_model.110119_t, internal, 955, 960
-recovered GeneMark_model.110119_t, internal, 1082, 1271
-recovered GeneMark_model.110119_t, internal, 1297, 1377
Valid prediction for GlimmerHMM_glimmerT_63019-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1493
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support