-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2187

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 60, 183
Couldn't classify 1158, 1323
Sorry, prediction snap_scaffold_2187-snap.1-T1 fails validation.
(GTT)	 AG	60-183	GT	TGG
(AGG)	 AG	614-746	GT	TGG
(TAA)	 AG	955-1036	GT	AGG
(GAG)	 AG	1158-1323	GT	AGG
-recovered snap_scaffold_2187-snap.1-T1, internal, 60, 183
-recovered snap_scaffold_2187-snap.1-T1, internal, 614, 746
-recovered snap_scaffold_2187-snap.1-T1, internal, 955, 1036
-recovered snap_scaffold_2187-snap.1-T1, internal, 1158, 1323
Couldn't classify 1158, 1323
Sorry, prediction GlimmerHMM_glimmerT_63018-T1 fails validation.
(ATG)	 CC	42-183	GT	TGG
(AGG)	 AG	614-746	GT	TGG
(TAA)	 AG	955-1036	GT	AGG
(GAG)	 AG	1158-1323	GT	AGG
-recovered GlimmerHMM_glimmerT_63018-T1, initial, 42, 183
-recovered GlimmerHMM_glimmerT_63018-T1, internal, 614, 746
-recovered GlimmerHMM_glimmerT_63018-T1, internal, 955, 1036
-recovered GlimmerHMM_glimmerT_63018-T1, internal, 1158, 1323
Couldn't classify 159, 183
Couldn't classify 1158, 1322
Sorry, prediction pasa_asmbl_29080.p1 fails validation.
(TCT)	 AG	159-183	GT	TGG
(AGG)	 AG	614-746	GT	TGG
(TAA)	 AG	955-1036	GT	AGG
(GAG)	 AG	1158-1322	GG	AAG
-recovered pasa_asmbl_29080.p1, internal, 159, 183
-recovered pasa_asmbl_29080.p1, internal, 614, 746
-recovered pasa_asmbl_29080.p1, internal, 955, 1036
Couldn't classify 60, 157
Couldn't classify 1158, 1323
Sorry, prediction GeneMark_model.110116_t fails validation.
(GTT)	 AG	60-157	GT	CAG
(TAA)	 AG	955-1036	GT	AGG
(GAG)	 AG	1158-1323	GT	AGG
-recovered GeneMark_model.110116_t, internal, 60, 157
-recovered GeneMark_model.110116_t, internal, 955, 1036
-recovered GeneMark_model.110116_t, internal, 1158, 1323
Couldn't classify 60, 183
Couldn't classify 1158, 1323
Sorry, prediction Augustus_model.g41991.t1 fails validation.
(GTT)	 AG	60-183	GT	TGG
(AGG)	 AG	614-746	GT	TGG
(TAA)	 AG	955-1036	GT	AGG
(GAG)	 AG	1158-1323	GT	AGG
-recovered Augustus_model.g41991.t1, internal, 60, 183
-recovered Augustus_model.g41991.t1, internal, 614, 746
-recovered Augustus_model.g41991.t1, internal, 955, 1036
-recovered Augustus_model.g41991.t1, internal, 1158, 1323

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1498
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support