-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2186

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 869, 1346
Sorry, prediction GlimmerHMM_glimmerT_63017-T1 fails validation.
(ATG)	 CC	124-154	GT	CAG
(AGC)	 AG	448-597	GT	AGG
(CCA)	 AG	869-1346	GT	CCG
-recovered GlimmerHMM_glimmerT_63017-T1, initial, 124, 154
-recovered GlimmerHMM_glimmerT_63017-T1, internal, 448, 597
-recovered GlimmerHMM_glimmerT_63017-T1, internal, 869, 1346
Couldn't classify 55, 154
Couldn't classify 894, 1494
Sorry, prediction GeneMark_model.110115_t fails validation.
(ACC)	 AG	55-154	GT	CAG
(AGC)	 AG	448-597	GT	AGG
(TGC)	 AG	742-774	GT	CAG
(TGC)	 AG	810-825	GT	CAG
(GCC)	 AG	894-1494	GC	CGG
-recovered GeneMark_model.110115_t, internal, 55, 154
-recovered GeneMark_model.110115_t, internal, 448, 597
-recovered GeneMark_model.110115_t, internal, 742, 774
-recovered GeneMark_model.110115_t, internal, 810, 825
-recovered GeneMark_model.110115_t, internal, 894, 1494
Couldn't classify 55, 154
Couldn't classify 869, 1385
Sorry, prediction snap_scaffold_2186-snap.1-T1 fails validation.
(ACC)	 AG	55-154	GT	CAG
(AGC)	 AG	448-597	GT	AGG
(CCA)	 AG	869-1385	GT	CGG
-recovered snap_scaffold_2186-snap.1-T1, internal, 55, 154
-recovered snap_scaffold_2186-snap.1-T1, internal, 448, 597
-recovered snap_scaffold_2186-snap.1-T1, internal, 869, 1385
Couldn't classify 55, 154
Couldn't classify 869, 1502
Sorry, prediction Augustus_model.g41990.t1 fails validation.
(ACC)	 AG	55-154	GT	CAG
(AGC)	 AG	448-597	GT	AGG
(CCA)	 AG	869-1502		CT
-recovered Augustus_model.g41990.t1, internal, 55, 154
-recovered Augustus_model.g41990.t1, internal, 448, 597

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1502
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support