-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2185

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 511, 634
Sorry, prediction GeneMark_model.110114_t fails validation.
(GGA)	 AG	511-634	GT	GAG
(AGA)	 AG	656-685	GC	AGG
(AGA)	 AG	869-908	GG	AGG
-recovered GeneMark_model.110114_t, terminal, 869, 908
-recovered GeneMark_model.110114_t, internal, 511, 634
-recovered GeneMark_model.110114_t, internal, 656, 685

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 423, 526
Couldn't classify 1216, 1329
Sorry, prediction Augustus_model.g41989.t1 fails validation.
(ATC)	 AG	423-526	GT	GAG
(GGG)	 AG	922-985	GT	AGG
(GCC)	 AG	1216-1329	GT	AGG
-recovered Augustus_model.g41989.t1, internal, 423, 526
-recovered Augustus_model.g41989.t1, internal, 922, 985
-recovered Augustus_model.g41989.t1, internal, 1216, 1329
Couldn't classify 423, 526
Couldn't classify 1216, 1329
Sorry, prediction snap_scaffold_2185-snap.1-T1 fails validation.
(ATC)	 AG	423-526	GT	GAG
(GGG)	 AG	922-985	GT	AGG
(GCC)	 AG	1216-1329	GT	AGG
-recovered snap_scaffold_2185-snap.1-T1, internal, 423, 526
-recovered snap_scaffold_2185-snap.1-T1, internal, 922, 985
-recovered snap_scaffold_2185-snap.1-T1, internal, 1216, 1329

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1503
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support