-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2184

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 771, 886
Sorry, prediction GeneMark_model.110113_t fails validation.
(ATG)	 AG	586-746	GT	AGG
(ACA)	 AG	771-886	GT	CAG
-recovered GeneMark_model.110113_t, initial, 586, 746
-recovered GeneMark_model.110113_t, internal, 586, 746
-recovered GeneMark_model.110113_t, internal, 771, 886

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 672, 907
Couldn't classify 1229, 1441
Sorry, prediction Augustus_model.g41988.t1 fails validation.
(AGC)	 AG	672-907	GT	AGG
(ATC)	 AG	1007-1081	GT	AGG
(GGT)	 AG	1229-1441	GT	AGG
-recovered Augustus_model.g41988.t1, internal, 672, 907
-recovered Augustus_model.g41988.t1, internal, 1007, 1081
-recovered Augustus_model.g41988.t1, internal, 1229, 1441
Valid prediction for GlimmerHMM_glimmerT_63015-T1
Couldn't classify 672, 907
Sorry, prediction GlimmerHMM_glimmerT_63016-T1 fails validation.
(AGC)	 AG	672-907	GT	AGG
(ATC)	 AG	1007-1135	TC	GAT
-recovered GlimmerHMM_glimmerT_63016-T1, terminal, 1007, 1135
-recovered GlimmerHMM_glimmerT_63016-T1, internal, 672, 907
Couldn't classify 1229, 1492
Sorry, prediction GeneMark_model.110112_t fails validation.
(ATG)	 TC	966-974	GT	AGG
(ATC)	 AG	1007-1081	GT	AGG
(GGT)	 AG	1229-1492	GC	AGG
-recovered GeneMark_model.110112_t, initial, 966, 974
-recovered GeneMark_model.110112_t, internal, 1007, 1081
-recovered GeneMark_model.110112_t, internal, 1229, 1492
Couldn't classify 672, 907
Couldn't classify 1229, 1441
Sorry, prediction snap_scaffold_2184-snap.1-T1 fails validation.
(AGC)	 AG	672-907	GT	AGG
(ATC)	 AG	1007-1081	GT	AGG
(GGT)	 AG	1229-1441	GT	AGG
-recovered snap_scaffold_2184-snap.1-T1, internal, 672, 907
-recovered snap_scaffold_2184-snap.1-T1, internal, 1007, 1081
-recovered snap_scaffold_2184-snap.1-T1, internal, 1229, 1441

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1504
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support