-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2181

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 861, 869
Sorry, prediction GeneMark_model.110109_t fails validation.
(TAT)	 AG	861-869	GT	AGG
(GCC)	 AG	894-1020	GC	GAG
-recovered GeneMark_model.110109_t, terminal, 894, 1020
-recovered GeneMark_model.110109_t, internal, 861, 869
-recovered GeneMark_model.110109_t, internal, 894, 1020
Valid prediction for Augustus_model.g41986.t1
add_exon() Sorry, Augustus_model.g41986.t1 1275-1389-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1509
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support