-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_218

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106970_t
Valid prediction for GeneMark_model.106972_t
Valid prediction for snap_scaffold_218-snap.4-T1
Valid prediction for snap_scaffold_218-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4264, 4457
Couldn't classify 7290, 7493
Sorry, prediction pasa_asmbl_29079.p1 fails validation.
(CTA)	 CT	4264-4457	GT	TGG
(GGA)	 AG	4860-4973	GT	TGG
(GGA)	 AG	5803-5959	GT	AGG
(GGT)	 AG	7290-7493	GG	AGG
-recovered pasa_asmbl_29079.p1, internal, 4860, 4973
-recovered pasa_asmbl_29079.p1, internal, 5803, 5959
Valid prediction for GlimmerHMM_glimmerT_61527-T1
Couldn't classify 9343, 9429
Sorry, prediction snap_scaffold_218-snap.2-T1 fails validation.
(ATG)	 AA	6588-6608	GT	TGG
(GGT)	 AG	7290-7505	GT	AGG
(CCT)	 AG	9343-9429	GT	TGG
-recovered snap_scaffold_218-snap.2-T1, initial, 6588, 6608
-recovered snap_scaffold_218-snap.2-T1, internal, 7290, 7505
-recovered snap_scaffold_218-snap.2-T1, internal, 9343, 9429
Valid prediction for CodingQuarry_transcript_32714-T1
Valid prediction for GeneMark_model.106971_t
Valid prediction for snap_scaffold_218-snap.3-T1
Couldn't classify 9343, 9429
Sorry, prediction GeneMark_model.106969_t fails validation.
(ATG)	 TC	6836-6838	GT	TGG
(GGT)	 AG	7290-7505	GT	AGG
(CCT)	 AG	9343-9429	GT	TGG
-recovered GeneMark_model.106969_t, initial, 6836, 6838
-recovered GeneMark_model.106969_t, internal, 7290, 7505
-recovered GeneMark_model.106969_t, internal, 9343, 9429
Couldn't classify 9343, 9444
Sorry, prediction Augustus_model.g40918.t1 fails validation.
(ATG)	 TC	1356-1415	GT	AGG
(CGG)	 AG	1882-2045	GT	CAG
(GTA)	 AG	2303-2384	GT	TGG
(CAC)	 AG	4060-4174	GT	ACG
(TGG)	 AG	4268-4457	GT	TGG
(GGA)	 AG	4860-4973	GT	TGG
(GGA)	 AG	5803-5959	GT	AGG
(GGT)	 AG	7290-7505	GT	AGG
(CCT)	 AG	9343-9444		TC
-recovered Augustus_model.g40918.t1, initial, 1356, 1415
-recovered Augustus_model.g40918.t1, internal, 1882, 2045
-recovered Augustus_model.g40918.t1, internal, 2303, 2384
-recovered Augustus_model.g40918.t1, internal, 4060, 4174
-recovered Augustus_model.g40918.t1, internal, 4268, 4457
-recovered Augustus_model.g40918.t1, internal, 4860, 4973
-recovered Augustus_model.g40918.t1, internal, 5803, 5959
-recovered Augustus_model.g40918.t1, internal, 7290, 7505

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2120, rend_intergenic: 16  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9019, rend_intergenic: 3550  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9444
-exon list size: 44


building trellis

2.2    
4.3    
6.5    
8.7    
10.9    
13.0    
15.2    
17.4    
19.6    
21.7    
23.9    
26.1    
28.3    
30.4    
32.6    
34.8    
37.0    
39.1    
41.3    
43.5    
45.7    
47.8    
50.0    
52.2    
54.3    
56.5    
58.7    
60.9    
63.0    
65.2    
67.4    
69.6    
71.7    
73.9    
76.1    
78.3    
80.4    
82.6    
84.8    
87.0    
89.1    
91.3    
93.5    
95.7    
97.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2120, rend_intergenic: 16  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9019, rend_intergenic: 3550  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support