-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2179

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63013-T1
Couldn't classify 57, 229
Couldn't classify 1428, 1495
Sorry, prediction GeneMark_model.110107_t fails validation.
(GCT)	 AG	57-229	GT	AGG
(AGC)	 AG	247-325	GT	AGG
(ATC)	 AG	1428-1495	GT	GAG
-recovered GeneMark_model.110107_t, internal, 57, 229
-recovered GeneMark_model.110107_t, internal, 247, 325
-recovered GeneMark_model.110107_t, internal, 1428, 1495

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1512
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support