-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2178

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 150, 177
Couldn't classify 1337, 1490
Sorry, prediction GeneMark_model.110106_t fails validation.
(ACT)	 AG	150-177	GT	GGG
(GGG)	 AG	727-876	GT	GAG
(AGA)	 AG	908-916	GC	AAG
(AGA)	 AG	940-945	GT	GGG
(ACA)	 AG	976-1083	GT	GAG
(ACA)	 AG	1163-1170	GT	AGG
(GCT)	 AG	1337-1490	GC	AGG
-recovered GeneMark_model.110106_t, internal, 150, 177
-recovered GeneMark_model.110106_t, internal, 727, 876
-recovered GeneMark_model.110106_t, internal, 908, 916
-recovered GeneMark_model.110106_t, internal, 940, 945
-recovered GeneMark_model.110106_t, internal, 976, 1083
-recovered GeneMark_model.110106_t, internal, 1163, 1170
-recovered GeneMark_model.110106_t, internal, 1337, 1490

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 107, 208
Couldn't classify 817, 897
Sorry, prediction snap_scaffold_2178-snap.1-T1 fails validation.
(GCC)	 AG	107-208	GT	ACG
(TAT)	 AG	817-897	GT	CAG
-recovered snap_scaffold_2178-snap.1-T1, internal, 107, 208
-recovered snap_scaffold_2178-snap.1-T1, internal, 817, 897

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1513
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support