-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2177

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 81, 206
Couldn't classify 1085, 1284
Sorry, prediction snap_scaffold_2177-snap.1-T1 fails validation.
(TTC)	 AG	81-206	GT	AGG
(CTC)	 AG	384-488	GT	TGG
(ACC)	 AG	753-903	GT	AGG
(GGG)	 AG	1085-1284	GT	AGG
-recovered snap_scaffold_2177-snap.1-T1, internal, 81, 206
-recovered snap_scaffold_2177-snap.1-T1, internal, 384, 488
-recovered snap_scaffold_2177-snap.1-T1, internal, 753, 903
-recovered snap_scaffold_2177-snap.1-T1, internal, 1085, 1284
Couldn't classify 95, 206
Sorry, prediction GlimmerHMM_glimmerT_63012-T1 fails validation.
(TGA)	 AG	95-206	GT	AGG
(CTC)	 AG	384-488	GT	TGG
(ACC)	 AG	753-903	GT	AGG
(GGG)	 AG	1085-1320	AC	AGA
-recovered GlimmerHMM_glimmerT_63012-T1, terminal, 1085, 1320
-recovered GlimmerHMM_glimmerT_63012-T1, internal, 95, 206
-recovered GlimmerHMM_glimmerT_63012-T1, internal, 384, 488
-recovered GlimmerHMM_glimmerT_63012-T1, internal, 753, 903
Couldn't classify 81, 206
Couldn't classify 1085, 1284
Sorry, prediction GeneMark_model.110105_t fails validation.
(TTC)	 AG	81-206	GT	AGG
(CTC)	 AG	384-488	GT	TGG
(ACC)	 AG	753-903	GT	AGG
(GGG)	 AG	1085-1284	GT	AGG
-recovered GeneMark_model.110105_t, internal, 81, 206
-recovered GeneMark_model.110105_t, internal, 384, 488
-recovered GeneMark_model.110105_t, internal, 753, 903
-recovered GeneMark_model.110105_t, internal, 1085, 1284
Couldn't classify 95, 206
Couldn't classify 1085, 1284
Sorry, prediction Augustus_model.g41984.t1 fails validation.
(TGA)	 AG	95-206	GT	AGG
(CTC)	 AG	384-488	GT	TGG
(ACC)	 AG	753-903	GT	AGG
(GGG)	 AG	1085-1284	GT	AGG
-recovered Augustus_model.g41984.t1, internal, 95, 206
-recovered Augustus_model.g41984.t1, internal, 384, 488
-recovered Augustus_model.g41984.t1, internal, 753, 903
-recovered Augustus_model.g41984.t1, internal, 1085, 1284

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1514
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support