-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2171

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 24, 32
Couldn't classify 1258, 1268
Sorry, prediction GeneMark_model.110102_t fails validation.
(GGA)	 AG	24-32	GT	GGG
(GGA)	 AG	61-91	GT	AGG
(GTG)	 AG	112-191	GT	ACG
(ACA)	 AG	241-273	GT	GGG
(AGA)	 AG	306-314	GT	AAG
(AGA)	 AG	362-426	GT	AGG
(CTG)	 AG	919-1021	GT	AGG
(GCT)	 AG	1046-1120	GT	ATG
(AGG)	 AG	1258-1268	GT	AGG
-recovered GeneMark_model.110102_t, internal, 24, 32
-recovered GeneMark_model.110102_t, internal, 61, 91
-recovered GeneMark_model.110102_t, internal, 112, 191
-recovered GeneMark_model.110102_t, internal, 241, 273
-recovered GeneMark_model.110102_t, internal, 306, 314
-recovered GeneMark_model.110102_t, internal, 362, 426
-recovered GeneMark_model.110102_t, internal, 919, 1021
-recovered GeneMark_model.110102_t, internal, 1046, 1120
-recovered GeneMark_model.110102_t, internal, 1258, 1268

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1520
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support