-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2169

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 437, 451
Couldn't classify 1459, 1473
Sorry, prediction GeneMark_model.110100_t fails validation.
(GCA)	 AG	437-451	GT	GAG
(AGG)	 AG	480-578	GT	AGG
(GGA)	 AG	607-639	GC	GAG
(AAA)	 AG	739-756	GT	ACG
(ATC)	 AG	779-790	GT	GAG
(GAG)	 AG	817-921	GT	CAG
(GGA)	 AG	944-970	GT	TGG
(GAT)	 AG	991-1020	GT	CAG
(GTC)	 AG	1459-1473	GT	GAG
-recovered GeneMark_model.110100_t, internal, 437, 451
-recovered GeneMark_model.110100_t, internal, 480, 578
-recovered GeneMark_model.110100_t, internal, 607, 639
-recovered GeneMark_model.110100_t, internal, 739, 756
-recovered GeneMark_model.110100_t, internal, 779, 790
-recovered GeneMark_model.110100_t, internal, 817, 921
-recovered GeneMark_model.110100_t, internal, 944, 970
-recovered GeneMark_model.110100_t, internal, 991, 1020
-recovered GeneMark_model.110100_t, internal, 1459, 1473

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1523
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support