-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2168

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 513, 683
Couldn't classify 1402, 1523
Sorry, prediction Augustus_model.g41982.t1 fails validation.
(GTG)	 AG	513-683	GT	AGG
(GTG)	 AG	935-1069	GT	TGG
(ATT)	 AG	1402-1523		CC
-recovered Augustus_model.g41982.t1, internal, 513, 683
-recovered Augustus_model.g41982.t1, internal, 935, 1069
Couldn't classify 513, 683
Couldn't classify 1402, 1515
Sorry, prediction GeneMark_model.110099_t fails validation.
(GTG)	 AG	513-683	GT	AGG
(GTG)	 AG	935-1069	GT	TGG
(ATT)	 AG	1402-1515	GC	GAG
-recovered GeneMark_model.110099_t, internal, 513, 683
-recovered GeneMark_model.110099_t, internal, 935, 1069
-recovered GeneMark_model.110099_t, internal, 1402, 1515
Valid prediction for GlimmerHMM_glimmerT_63010-T1
Couldn't classify 513, 683
Couldn't classify 1402, 1509
Sorry, prediction snap_scaffold_2168-snap.1-T1 fails validation.
(GTG)	 AG	513-683	GT	AGG
(GTG)	 AG	935-1069	GT	TGG
(ATT)	 AG	1402-1509	GT	CGG
-recovered snap_scaffold_2168-snap.1-T1, internal, 513, 683
-recovered snap_scaffold_2168-snap.1-T1, internal, 935, 1069
-recovered snap_scaffold_2168-snap.1-T1, internal, 1402, 1509
Couldn't classify 462, 683
Couldn't classify 1402, 1497
Sorry, prediction pasa_asmbl_29072.p1 fails validation.
(GTG)	 GT	462-683	GT	AGG
(GTG)	 AG	935-1069	GT	TGG
(ATT)	 AG	1402-1497	AT	GCA
-recovered pasa_asmbl_29072.p1, internal, 935, 1069

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63011-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63011-T1 448-625-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1523
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support