-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2167

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1248, 1358
Sorry, prediction Augustus_model.g41981.t1 fails validation.
(ATG)	 AA	120-383	GT	AGG
(GGC)	 AG	485-560	GT	AGG
(GAG)	 AG	873-1090	GT	AGG
(TTA)	 AG	1248-1358	GT	TGG
-recovered Augustus_model.g41981.t1, initial, 120, 383
-recovered Augustus_model.g41981.t1, internal, 485, 560
-recovered Augustus_model.g41981.t1, internal, 873, 1090
-recovered Augustus_model.g41981.t1, internal, 1248, 1358
Couldn't classify 1320, 1358
Sorry, prediction GeneMark_model.110098_t fails validation.
(ATG)	 AG	141-383	GT	AGG
(GAG)	 AG	959-1090	GT	AGG
(GTT)	 AG	1320-1358	GT	TGG
-recovered GeneMark_model.110098_t, initial, 141, 383
-recovered GeneMark_model.110098_t, internal, 141, 383
-recovered GeneMark_model.110098_t, internal, 959, 1090
-recovered GeneMark_model.110098_t, internal, 1320, 1358
Valid prediction for GlimmerHMM_glimmerT_63008-T1
Valid prediction for GlimmerHMM_glimmerT_63009-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63009-T1 95-392-terminal-1 is invalid.
Couldn't classify 99, 383
Couldn't classify 1248, 1358
Sorry, prediction snap_scaffold_2167-snap.1-T1 fails validation.
(GTA)	 AG	99-383	GT	AGG
(GGC)	 AG	485-560	GT	AGG
(GAG)	 AG	873-1090	GT	AGG
(TTA)	 AG	1248-1358	GT	TGG
-recovered snap_scaffold_2167-snap.1-T1, internal, 99, 383
-recovered snap_scaffold_2167-snap.1-T1, internal, 485, 560
-recovered snap_scaffold_2167-snap.1-T1, internal, 873, 1090
-recovered snap_scaffold_2167-snap.1-T1, internal, 1248, 1358

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1523
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support